Wall clock time and date at job start Tue Mar 31 2020 12:14:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.33816 * 124.52770 * 2 1 4 4 C 1.37475 * 115.10370 * 180.02562 * 3 2 1 5 5 C 1.50700 * 123.34923 * 179.97438 * 4 3 2 6 6 C 1.36647 * 113.29693 * 359.97438 * 4 3 2 7 7 C 1.46581 * 125.45729 * 180.02562 * 6 4 3 8 8 O 1.21696 * 119.99917 * 6.34344 * 7 6 4 9 9 N 1.34779 * 119.99807 * 186.34359 * 7 6 4 10 10 C 1.47348 * 125.53137 * 5.25775 * 9 7 6 11 11 C 1.55149 * 104.78747 * 156.48872 * 10 9 7 12 12 C 1.54803 * 101.40028 * 37.52404 * 11 10 9 13 13 H 1.08995 * 112.64204 * 85.17346 * 12 11 10 14 14 C 1.53267 * 109.74756 * 212.12579 * 12 11 10 15 15 N 1.46585 * 108.15720 * 95.76496 * 14 12 11 16 16 C 1.36938 * 125.30533 * 177.88498 * 15 14 12 17 17 H 1.07995 * 119.99940 * 0.02562 * 16 15 14 18 18 C 1.38811 * 119.99779 * 179.97438 * 16 15 14 19 19 N 1.31614 * 120.00379 * 0.02562 * 18 16 15 20 20 Si 1.86805 * 119.99617 * 180.02562 * 18 16 15 21 21 H 1.48496 * 109.47485 * 0.02562 * 20 18 16 22 22 H 1.48497 * 109.47295 * 120.00570 * 20 18 16 23 23 H 1.48505 * 109.46779 * 240.00142 * 20 18 16 24 24 C 1.47547 * 109.62730 * 358.29237 * 15 14 12 25 25 C 1.47217 * 125.52738 * 185.57231 * 9 7 6 26 26 H 1.08999 * 112.28677 * 56.20730 * 25 9 7 27 27 S 1.70623 * 124.52075 * 180.02562 * 2 1 3 28 28 H 1.08997 * 109.47586 * 180.02562 * 1 2 3 29 29 H 1.09001 * 109.46871 * 300.00490 * 1 2 3 30 30 H 1.08999 * 109.47079 * 60.00172 * 1 2 3 31 31 H 1.08002 * 122.44586 * 0.03883 * 3 2 1 32 32 H 1.09000 * 109.47074 * 269.99921 * 5 4 3 33 33 H 1.08997 * 109.47371 * 30.00324 * 5 4 3 34 34 H 1.09001 * 109.46736 * 150.00201 * 5 4 3 35 35 H 1.09001 * 110.35997 * 275.43997 * 10 9 7 36 36 H 1.09008 * 110.35218 * 37.73378 * 10 9 7 37 37 H 1.09004 * 111.20891 * 279.44271 * 11 10 9 38 38 H 1.08997 * 110.95967 * 155.49772 * 11 10 9 39 39 H 1.09001 * 109.73493 * 215.44475 * 14 12 11 40 40 H 1.08994 * 109.74073 * 336.07900 * 14 12 11 41 41 H 0.97001 * 120.00097 * 180.02562 * 19 18 16 42 42 H 1.08999 * 109.81468 * 258.08772 * 24 15 14 43 43 H 1.08998 * 110.47819 * 136.49487 * 24 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2654 1.1024 0.0000 4 6 3.6216 0.8773 -0.0006 5 6 4.6450 1.9836 -0.0012 6 6 3.9493 -0.4493 -0.0005 7 6 5.3123 -0.9885 -0.0004 8 8 6.2634 -0.2383 0.1160 9 7 5.5121 -2.3151 -0.1293 10 6 4.4637 -3.3181 -0.3863 11 6 5.2099 -4.5137 -1.0349 12 6 6.5391 -4.5117 -0.2413 13 1 6.4691 -5.0637 0.6959 14 6 7.6803 -4.9979 -1.1414 15 7 8.3490 -3.8222 -1.7065 16 6 9.4439 -3.8533 -2.5284 17 1 9.8821 -4.7997 -2.8086 18 6 9.9898 -2.6682 -3.0023 19 7 9.4554 -1.5148 -2.6613 20 14 11.4829 -2.7107 -4.1241 21 1 11.8885 -4.1203 -4.3554 22 1 11.1449 -2.0740 -5.4224 23 1 12.6020 -1.9713 -3.4867 24 6 7.6685 -2.5964 -1.2470 25 6 6.8125 -2.9980 -0.0296 26 1 7.3149 -2.7944 0.9160 27 16 2.4739 -1.4058 -0.0006 28 1 -0.3634 -1.0276 0.0005 29 1 -0.3633 0.5139 0.8900 30 1 -0.3633 0.5138 -0.8900 31 1 1.8430 2.0964 0.0006 32 1 4.8913 2.2501 -1.0290 33 1 4.2388 2.8547 0.5127 34 1 5.5453 1.6459 0.5123 35 1 3.9937 -3.6235 0.5485 36 1 3.7179 -2.9192 -1.0740 37 1 5.3878 -4.3388 -2.0960 38 1 4.6638 -5.4443 -0.8804 39 1 8.3912 -5.5784 -0.5533 40 1 7.2781 -5.6144 -1.9453 41 1 9.8367 -0.6867 -2.9927 42 1 7.0282 -2.2099 -2.0399 43 1 8.3986 -1.8417 -0.9547 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001075835237.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:14:06 Heat of formation + Delta-G solvation = 32.207521 kcal Electronic energy + Delta-G solvation = -25345.556304 eV Core-core repulsion = 21904.215594 eV Total energy + Delta-G solvation = -3441.340710 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 320.130 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -40.11917 -38.68936 -37.23118 -34.91028 -32.72096 -32.25460 -30.66550 -29.08714 -28.26199 -27.45368 -26.27242 -24.48293 -22.85908 -21.98689 -21.17864 -20.12413 -19.08054 -17.96295 -17.70536 -16.80639 -16.02400 -15.55536 -15.24433 -14.70518 -14.41181 -14.26413 -13.98838 -13.57408 -13.30988 -13.21197 -13.08498 -13.02519 -12.68205 -12.57148 -12.13879 -12.01313 -11.83219 -11.65344 -11.57802 -11.44828 -11.22221 -11.01860 -10.85913 -10.77758 -10.30812 -10.14021 -9.99866 -9.74528 -9.67419 -9.38461 -8.60108 -8.56408 -8.43180 -8.08721 -6.77908 -5.58339 -3.00305 0.59064 1.51691 1.91647 2.43036 3.25599 3.44313 3.48896 3.52236 3.54457 4.53497 4.61041 4.64899 4.76133 4.98723 5.07619 5.19364 5.23100 5.25401 5.40103 5.44777 5.49917 5.59384 5.63540 5.64816 5.67067 5.80799 5.90486 5.92412 6.00291 6.02613 6.11722 6.21746 6.33237 6.41630 6.54156 6.64353 6.65467 6.68749 6.89453 7.59184 7.68805 7.90790 8.01525 8.39642 8.56792 9.27628 9.89179 10.51389 11.46327 Molecular weight = 320.13amu Principal moments of inertia in cm(-1) A = 0.018470 B = 0.003951 C = 0.003459 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1515.581957 B = 7084.342265 C = 8093.239108 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.081 4.081 2 C -0.218 4.218 3 C -0.154 4.154 4 C -0.021 4.021 5 C -0.108 4.108 6 C -0.262 4.262 7 C 0.599 3.401 8 O -0.510 6.510 9 N -0.606 5.606 10 C 0.090 3.910 11 C -0.116 4.116 12 C -0.109 4.109 13 H 0.089 0.911 14 C 0.147 3.853 15 N -0.604 5.604 16 C -0.232 4.232 17 H 0.078 0.922 18 C -0.007 4.007 19 N -0.913 5.913 20 Si 0.911 3.089 21 H -0.280 1.280 22 H -0.291 1.291 23 H -0.290 1.290 24 C 0.170 3.830 25 C 0.116 3.884 26 H 0.083 0.917 27 S 0.202 5.798 28 H 0.066 0.934 29 H 0.075 0.925 30 H 0.076 0.924 31 H 0.138 0.862 32 H 0.075 0.925 33 H 0.061 0.939 34 H 0.097 0.903 35 H 0.069 0.931 36 H 0.076 0.924 37 H 0.084 0.916 38 H 0.080 0.920 39 H 0.023 0.977 40 H 0.026 0.974 41 H 0.252 0.748 42 H 0.022 0.978 43 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.491 -0.266 7.434 20.862 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.336 4.336 3 C -0.185 4.185 4 C -0.036 4.036 5 C -0.166 4.166 6 C -0.382 4.382 7 C 0.387 3.613 8 O -0.387 6.387 9 N -0.340 5.340 10 C -0.035 4.035 11 C -0.155 4.155 12 C -0.129 4.129 13 H 0.107 0.893 14 C 0.021 3.979 15 N -0.332 5.332 16 C -0.360 4.360 17 H 0.096 0.904 18 C -0.204 4.204 19 N -0.560 5.560 20 Si 0.742 3.258 21 H -0.205 1.205 22 H -0.218 1.218 23 H -0.217 1.217 24 C 0.044 3.956 25 C 0.013 3.987 26 H 0.101 0.899 27 S 0.471 5.529 28 H 0.085 0.915 29 H 0.094 0.906 30 H 0.094 0.906 31 H 0.156 0.844 32 H 0.093 0.907 33 H 0.080 0.920 34 H 0.116 0.884 35 H 0.087 0.913 36 H 0.093 0.907 37 H 0.103 0.897 38 H 0.099 0.901 39 H 0.041 0.959 40 H 0.044 0.956 41 H 0.063 0.937 42 H 0.040 0.960 43 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges -19.200 -1.192 7.391 20.608 hybrid contribution 0.766 1.598 -0.675 1.896 sum -18.434 0.406 6.716 19.624 Atomic orbital electron populations 1.20328 0.87837 1.02805 1.02994 1.24473 1.01528 0.99445 1.08191 1.19768 0.92178 0.99446 1.07061 1.19453 0.94651 0.93492 0.95962 1.20768 0.98249 0.94409 1.03213 1.24413 0.96734 0.97274 1.19812 1.16491 0.86589 0.80815 0.77402 1.90826 1.41735 1.56398 1.49736 1.48372 1.09408 1.05099 1.71080 1.22484 0.91084 0.90025 0.99891 1.22807 0.95362 0.96492 1.00795 1.22880 0.95670 0.95576 0.98729 0.89306 1.20945 0.91691 0.91294 0.93971 1.44419 1.32695 0.99851 1.56186 1.19063 1.03136 0.92978 1.20836 0.90369 1.24844 0.99520 0.95359 1.00658 1.69947 1.41505 0.96636 1.47886 0.86054 0.82405 0.77235 0.80102 1.20540 1.21813 1.21720 1.21809 0.94045 0.89899 0.89799 1.23000 0.83720 0.90327 1.01678 0.89897 1.83201 0.94044 1.06675 1.68992 0.91496 0.90608 0.90577 0.84410 0.90691 0.92009 0.88405 0.91264 0.90658 0.89699 0.90119 0.95880 0.95637 0.93695 0.95963 0.88608 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.60 10.33 36.00 0.37 -0.23 16 2 C -0.22 -2.37 6.28 -35.86 -0.23 -2.59 16 3 C -0.15 -1.84 9.82 -41.41 -0.41 -2.25 16 4 C -0.02 -0.31 5.90 -105.47 -0.62 -0.93 16 5 C -0.11 -1.56 9.63 36.01 0.35 -1.21 16 6 C -0.26 -4.20 6.34 -36.79 -0.23 -4.43 16 7 C 0.60 11.69 7.63 -12.90 -0.10 11.59 16 8 O -0.51 -11.74 14.21 5.19 0.07 -11.67 16 9 N -0.61 -11.01 2.85 -163.10 -0.47 -11.48 16 10 C 0.09 1.24 5.26 -2.44 -0.01 1.23 16 11 C -0.12 -1.65 6.26 -24.64 -0.15 -1.80 16 12 C -0.11 -1.82 3.91 -88.33 -0.35 -2.16 16 13 H 0.09 1.23 8.14 -51.93 -0.42 0.81 16 14 C 0.15 3.00 6.66 -3.86 -0.03 2.98 16 15 N -0.60 -15.76 3.40 -171.46 -0.58 -16.34 16 16 C -0.23 -6.59 10.25 -15.06 -0.15 -6.74 16 17 H 0.08 2.13 7.83 -52.49 -0.41 1.72 16 18 C -0.01 -0.21 5.48 -17.43 -0.10 -0.31 16 19 N -0.91 -28.03 10.16 55.49 0.56 -27.47 16 20 Si 0.91 22.65 29.55 -169.99 -5.02 17.63 16 21 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 22 H -0.29 -7.29 7.11 56.52 0.40 -6.89 16 23 H -0.29 -7.26 7.11 56.52 0.40 -6.86 16 24 C 0.17 4.37 4.68 -2.87 -0.01 4.36 16 25 C 0.12 2.34 3.87 -65.74 -0.25 2.09 16 26 H 0.08 1.70 8.14 -51.93 -0.42 1.28 16 27 S 0.20 2.38 18.58 -107.50 -2.00 0.38 16 28 H 0.07 0.42 8.11 -51.93 -0.42 0.00 16 29 H 0.08 0.48 8.14 -51.93 -0.42 0.05 16 30 H 0.08 0.50 8.14 -51.93 -0.42 0.07 16 31 H 0.14 1.35 8.06 -52.49 -0.42 0.92 16 32 H 0.07 1.09 8.14 -51.93 -0.42 0.67 16 33 H 0.06 0.71 8.14 -51.93 -0.42 0.28 16 34 H 0.10 1.67 5.88 -51.93 -0.31 1.36 16 35 H 0.07 0.80 7.91 -51.93 -0.41 0.39 16 36 H 0.08 0.98 5.79 -39.31 -0.23 0.76 16 37 H 0.08 1.40 7.88 -51.93 -0.41 0.99 16 38 H 0.08 0.86 8.14 -51.93 -0.42 0.44 16 39 H 0.02 0.46 8.14 -51.93 -0.42 0.04 16 40 H 0.03 0.51 7.74 -51.93 -0.40 0.11 16 41 H 0.25 7.57 8.31 -40.82 -0.34 7.23 16 42 H 0.02 0.64 7.94 -51.93 -0.41 0.23 16 43 H 0.10 2.89 6.29 -51.93 -0.33 2.56 16 LS Contribution 349.26 15.07 5.26 5.26 Total: -1.00 -33.86 349.26 -10.36 -44.22 By element: Atomic # 1 Polarization: 6.14 SS G_CDS: -6.27 Total: -0.13 kcal Atomic # 6 Polarization: 1.51 SS G_CDS: -1.92 Total: -0.42 kcal Atomic # 7 Polarization: -54.80 SS G_CDS: -0.48 Total: -55.29 kcal Atomic # 8 Polarization: -11.74 SS G_CDS: 0.07 Total: -11.67 kcal Atomic # 14 Polarization: 22.65 SS G_CDS: -5.02 Total: 17.63 kcal Atomic # 16 Polarization: 2.38 SS G_CDS: -2.00 Total: 0.38 kcal Total LS contribution 5.26 Total: 5.26 kcal Total: -33.86 -10.36 -44.22 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001075835237.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 76.430 kcal (2) G-P(sol) polarization free energy of solvation -33.865 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 42.565 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.357 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.222 kcal (6) G-S(sol) free energy of system = (1) + (5) 32.208 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds