Wall clock time and date at job start Tue Mar 31 2020 12:14:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.33816 * 124.52770 * 2 1 4 4 C 1.37475 * 115.10370 * 180.02562 * 3 2 1 5 5 C 1.50700 * 123.34923 * 179.97438 * 4 3 2 6 6 C 1.36647 * 113.29693 * 359.97438 * 4 3 2 7 7 C 1.46581 * 125.45729 * 180.02562 * 6 4 3 8 8 O 1.21696 * 119.99917 * 6.34344 * 7 6 4 9 9 N 1.34779 * 119.99807 * 186.34359 * 7 6 4 10 10 C 1.47348 * 125.53137 * 5.25775 * 9 7 6 11 11 C 1.55149 * 104.78747 * 156.48872 * 10 9 7 12 12 C 1.54803 * 101.40028 * 37.52404 * 11 10 9 13 13 H 1.08995 * 112.64204 * 85.17346 * 12 11 10 14 14 C 1.53267 * 109.74756 * 212.12579 * 12 11 10 15 15 N 1.46585 * 108.15720 * 95.76496 * 14 12 11 16 16 C 1.36938 * 125.30533 * 177.88498 * 15 14 12 17 17 H 1.07995 * 119.99940 * 0.02562 * 16 15 14 18 18 C 1.38811 * 119.99779 * 179.97438 * 16 15 14 19 19 N 1.31614 * 120.00379 * 0.02562 * 18 16 15 20 20 Si 1.86805 * 119.99617 * 180.02562 * 18 16 15 21 21 H 1.48496 * 109.47485 * 0.02562 * 20 18 16 22 22 H 1.48497 * 109.47295 * 120.00570 * 20 18 16 23 23 H 1.48505 * 109.46779 * 240.00142 * 20 18 16 24 24 C 1.47547 * 109.62730 * 358.29237 * 15 14 12 25 25 C 1.47217 * 125.52738 * 185.57231 * 9 7 6 26 26 H 1.08999 * 112.28677 * 56.20730 * 25 9 7 27 27 S 1.70623 * 124.52075 * 180.02562 * 2 1 3 28 28 H 1.08997 * 109.47586 * 180.02562 * 1 2 3 29 29 H 1.09001 * 109.46871 * 300.00490 * 1 2 3 30 30 H 1.08999 * 109.47079 * 60.00172 * 1 2 3 31 31 H 1.08002 * 122.44586 * 0.03883 * 3 2 1 32 32 H 1.09000 * 109.47074 * 269.99921 * 5 4 3 33 33 H 1.08997 * 109.47371 * 30.00324 * 5 4 3 34 34 H 1.09001 * 109.46736 * 150.00201 * 5 4 3 35 35 H 1.09001 * 110.35997 * 275.43997 * 10 9 7 36 36 H 1.09008 * 110.35218 * 37.73378 * 10 9 7 37 37 H 1.09004 * 111.20891 * 279.44271 * 11 10 9 38 38 H 1.08997 * 110.95967 * 155.49772 * 11 10 9 39 39 H 1.09001 * 109.73493 * 215.44475 * 14 12 11 40 40 H 1.08994 * 109.74073 * 336.07900 * 14 12 11 41 41 H 0.97001 * 120.00097 * 180.02562 * 19 18 16 42 42 H 1.08999 * 109.81468 * 258.08772 * 24 15 14 43 43 H 1.08998 * 110.47819 * 136.49487 * 24 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2654 1.1024 0.0000 4 6 3.6216 0.8773 -0.0006 5 6 4.6450 1.9836 -0.0012 6 6 3.9493 -0.4493 -0.0005 7 6 5.3123 -0.9885 -0.0004 8 8 6.2634 -0.2383 0.1160 9 7 5.5121 -2.3151 -0.1293 10 6 4.4637 -3.3181 -0.3863 11 6 5.2099 -4.5137 -1.0349 12 6 6.5391 -4.5117 -0.2413 13 1 6.4691 -5.0637 0.6959 14 6 7.6803 -4.9979 -1.1414 15 7 8.3490 -3.8222 -1.7065 16 6 9.4439 -3.8533 -2.5284 17 1 9.8821 -4.7997 -2.8086 18 6 9.9898 -2.6682 -3.0023 19 7 9.4554 -1.5148 -2.6613 20 14 11.4829 -2.7107 -4.1241 21 1 11.8885 -4.1203 -4.3554 22 1 11.1449 -2.0740 -5.4224 23 1 12.6020 -1.9713 -3.4867 24 6 7.6685 -2.5964 -1.2470 25 6 6.8125 -2.9980 -0.0296 26 1 7.3149 -2.7944 0.9160 27 16 2.4739 -1.4058 -0.0006 28 1 -0.3634 -1.0276 0.0005 29 1 -0.3633 0.5139 0.8900 30 1 -0.3633 0.5138 -0.8900 31 1 1.8430 2.0964 0.0006 32 1 4.8913 2.2501 -1.0290 33 1 4.2388 2.8547 0.5127 34 1 5.5453 1.6459 0.5123 35 1 3.9937 -3.6235 0.5485 36 1 3.7179 -2.9192 -1.0740 37 1 5.3878 -4.3388 -2.0960 38 1 4.6638 -5.4443 -0.8804 39 1 8.3912 -5.5784 -0.5533 40 1 7.2781 -5.6144 -1.9453 41 1 9.8367 -0.6867 -2.9927 42 1 7.0282 -2.2099 -2.0399 43 1 8.3986 -1.8417 -0.9547 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001075835237.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:14:05 Heat of formation + Delta-G solvation = 10.561564 kcal Electronic energy + Delta-G solvation = -25346.494943 eV Core-core repulsion = 21904.215594 eV Total energy + Delta-G solvation = -3442.279349 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 320.130 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -41.57495 -39.92739 -38.57700 -36.66781 -34.19024 -33.55525 -32.30296 -30.74918 -29.46733 -28.69562 -27.71217 -26.43849 -24.17541 -22.90196 -22.67440 -21.77666 -20.58457 -19.25278 -18.96825 -18.71603 -17.41215 -16.90517 -16.57547 -16.50495 -15.86479 -15.43914 -15.17627 -15.05286 -14.86749 -14.38827 -14.29821 -13.99842 -13.93683 -13.84441 -13.72451 -13.54421 -13.26390 -13.02013 -12.84407 -12.76561 -12.65465 -12.56148 -12.51109 -12.17140 -11.98516 -11.84909 -11.60290 -11.44649 -11.35900 -10.87788 -10.76319 -9.84006 -9.51604 -9.24770 -8.92551 -7.79840 -5.25093 -0.47490 0.51692 0.94356 1.38050 1.41867 1.44316 1.54942 1.88540 2.18015 2.47451 3.29481 3.34417 3.53142 3.70832 3.79989 3.84520 3.99995 4.21888 4.23767 4.26967 4.30259 4.41076 4.45830 4.54120 4.62457 4.65583 4.71616 4.78346 4.79239 4.92556 4.98629 5.07419 5.09869 5.13351 5.15504 5.21368 5.40485 5.44807 5.47443 5.52736 5.58414 5.80688 6.21992 6.51126 7.04366 7.13285 7.76404 8.37991 9.23041 Molecular weight = 320.13amu Principal moments of inertia in cm(-1) A = 0.018470 B = 0.003951 C = 0.003459 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1515.581957 B = 7084.342265 C = 8093.239108 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.084 4.084 2 C -0.199 4.199 3 C -0.170 4.170 4 C -0.025 4.025 5 C -0.107 4.107 6 C -0.316 4.316 7 C 0.587 3.413 8 O -0.569 6.569 9 N -0.610 5.610 10 C 0.086 3.914 11 C -0.108 4.108 12 C -0.091 4.091 13 H 0.135 0.865 14 C 0.139 3.861 15 N -0.627 5.627 16 C -0.240 4.240 17 H 0.090 0.910 18 C -0.073 4.073 19 N -0.951 5.951 20 Si 0.982 3.018 21 H -0.257 1.257 22 H -0.295 1.295 23 H -0.294 1.294 24 C 0.191 3.809 25 C 0.119 3.881 26 H 0.072 0.928 27 S 0.258 5.742 28 H 0.082 0.918 29 H 0.094 0.906 30 H 0.090 0.910 31 H 0.162 0.838 32 H 0.064 0.936 33 H 0.092 0.908 34 H 0.063 0.937 35 H 0.108 0.892 36 H 0.085 0.915 37 H 0.054 0.946 38 H 0.134 0.866 39 H 0.034 0.966 40 H 0.039 0.961 41 H 0.242 0.758 42 H -0.024 1.024 43 H 0.038 0.962 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.285 -2.799 8.137 24.825 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.318 4.318 3 C -0.200 4.200 4 C -0.041 4.041 5 C -0.165 4.165 6 C -0.435 4.435 7 C 0.378 3.622 8 O -0.450 6.450 9 N -0.342 5.342 10 C -0.036 4.036 11 C -0.146 4.146 12 C -0.110 4.110 13 H 0.153 0.847 14 C 0.014 3.986 15 N -0.354 5.354 16 C -0.369 4.369 17 H 0.108 0.892 18 C -0.266 4.266 19 N -0.600 5.600 20 Si 0.810 3.190 21 H -0.181 1.181 22 H -0.222 1.222 23 H -0.221 1.221 24 C 0.065 3.935 25 C 0.014 3.986 26 H 0.090 0.910 27 S 0.528 5.472 28 H 0.101 0.899 29 H 0.112 0.888 30 H 0.109 0.891 31 H 0.180 0.820 32 H 0.083 0.917 33 H 0.111 0.889 34 H 0.082 0.918 35 H 0.126 0.874 36 H 0.102 0.898 37 H 0.073 0.927 38 H 0.152 0.848 39 H 0.052 0.948 40 H 0.057 0.943 41 H 0.051 0.949 42 H -0.006 1.006 43 H 0.057 0.943 Dipole moment (debyes) X Y Z Total from point charges -23.035 -3.810 8.102 24.714 hybrid contribution 1.856 2.378 -0.896 3.146 sum -21.180 -1.432 7.206 22.418 Atomic orbital electron populations 1.20532 0.84700 1.04420 1.04532 1.25054 1.03484 0.98600 1.04704 1.19896 0.90698 1.01223 1.08148 1.19711 0.96066 0.93043 0.95300 1.20696 0.97477 0.95897 1.02469 1.24237 0.96839 0.98876 1.23581 1.17169 0.87788 0.80915 0.76356 1.90788 1.44033 1.57837 1.52365 1.48460 1.09641 1.05572 1.70568 1.22826 0.90164 0.88667 1.01990 1.22838 0.94311 0.98918 0.98504 1.22947 0.95548 0.92255 1.00299 0.84726 1.21242 0.92899 0.89574 0.94905 1.44748 1.32661 1.01867 1.56153 1.19553 1.03619 0.93316 1.20441 0.89182 1.25796 1.02864 0.95049 1.02845 1.70295 1.43185 0.97028 1.49485 0.84958 0.78437 0.78113 0.77521 1.18114 1.22182 1.22129 1.21252 0.92599 0.89035 0.90645 1.22689 0.84236 0.93489 0.98144 0.91001 1.82731 0.90865 1.05853 1.67782 0.89902 0.88775 0.89109 0.82003 0.91722 0.88913 0.91847 0.87396 0.89757 0.92732 0.84792 0.94828 0.94273 0.94896 1.00566 0.94340 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.82 10.33 71.23 0.74 -0.08 16 2 C -0.20 -3.63 6.28 24.68 0.15 -3.47 16 3 C -0.17 -3.72 9.82 21.08 0.21 -3.52 16 4 C -0.03 -0.76 5.90 -20.42 -0.12 -0.88 16 5 C -0.11 -3.32 9.63 71.24 0.69 -2.64 16 6 C -0.32 -10.27 6.34 24.08 0.15 -10.12 16 7 C 0.59 24.46 7.63 86.42 0.66 25.12 16 8 O -0.57 -29.19 14.21 -4.33 -0.06 -29.25 16 9 N -0.61 -22.72 2.85 -788.13 -2.25 -24.97 16 10 C 0.09 2.16 5.26 86.95 0.46 2.62 16 11 C -0.11 -2.70 6.26 31.95 0.20 -2.50 16 12 C -0.09 -2.84 3.91 -9.31 -0.04 -2.87 16 13 H 0.13 3.06 8.14 -2.39 -0.02 3.04 16 14 C 0.14 5.49 6.66 86.45 0.58 6.07 16 15 N -0.63 -33.90 3.40 -696.39 -2.37 -36.26 16 16 C -0.24 -14.07 10.25 84.03 0.86 -13.21 16 17 H 0.09 4.92 7.83 -2.91 -0.02 4.90 16 18 C -0.07 -4.44 5.48 84.86 0.47 -3.97 16 19 N -0.95 -62.93 10.16 21.65 0.22 -62.71 16 20 Si 0.98 48.36 29.55 68.60 2.03 50.39 16 21 H -0.26 -11.58 7.11 99.48 0.71 -10.87 16 22 H -0.29 -14.55 7.11 99.48 0.71 -13.84 16 23 H -0.29 -14.55 7.11 99.48 0.71 -13.84 16 24 C 0.19 10.60 4.68 86.57 0.41 11.01 16 25 C 0.12 4.97 3.87 46.02 0.18 5.15 16 26 H 0.07 3.12 8.14 -2.39 -0.02 3.10 16 27 S 0.26 5.36 18.58 -56.49 -1.05 4.31 16 28 H 0.08 0.60 8.11 -2.39 -0.02 0.58 16 29 H 0.09 0.69 8.14 -2.39 -0.02 0.67 16 30 H 0.09 0.73 8.14 -2.39 -0.02 0.71 16 31 H 0.16 2.68 8.06 -2.91 -0.02 2.66 16 32 H 0.06 2.08 8.14 -2.39 -0.02 2.06 16 33 H 0.09 2.17 8.14 -2.39 -0.02 2.15 16 34 H 0.06 2.43 5.88 -2.39 -0.01 2.41 16 35 H 0.11 1.95 7.91 -2.39 -0.02 1.93 16 36 H 0.08 1.99 5.79 -10.40 -0.06 1.93 16 37 H 0.05 1.72 7.88 -2.38 -0.02 1.70 16 38 H 0.13 2.01 8.14 -2.39 -0.02 2.00 16 39 H 0.03 1.28 8.14 -2.39 -0.02 1.26 16 40 H 0.04 1.47 7.74 -2.39 -0.02 1.45 16 41 H 0.24 15.70 8.31 -92.71 -0.77 14.93 16 42 H -0.02 -1.49 7.94 -2.39 -0.02 -1.51 16 43 H 0.04 2.56 6.29 -2.39 -0.02 2.55 16 Total: -1.00 -84.91 349.26 3.07 -81.84 By element: Atomic # 1 Polarization: 8.99 SS G_CDS: 0.96 Total: 9.95 kcal Atomic # 6 Polarization: 1.12 SS G_CDS: 5.58 Total: 6.70 kcal Atomic # 7 Polarization: -119.54 SS G_CDS: -4.39 Total: -123.93 kcal Atomic # 8 Polarization: -29.19 SS G_CDS: -0.06 Total: -29.25 kcal Atomic # 14 Polarization: 48.36 SS G_CDS: 2.03 Total: 50.39 kcal Atomic # 16 Polarization: 5.36 SS G_CDS: -1.05 Total: 4.31 kcal Total: -84.91 3.07 -81.84 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001075835237.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 92.398 kcal (2) G-P(sol) polarization free energy of solvation -84.905 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 7.493 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.069 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.836 kcal (6) G-S(sol) free energy of system = (1) + (5) 10.562 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds