Wall clock time and date at job start Tue Mar 31 2020 12:29:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.50704 * 109.46983 * 2 1 4 4 C 1.37464 * 123.34967 * 264.98061 * 3 2 1 5 5 C 1.33826 * 115.10025 * 180.02562 * 4 3 2 6 6 S 1.70613 * 110.95026 * 359.72532 * 5 4 3 7 7 C 1.36647 * 123.34824 * 84.99808 * 3 2 1 8 8 C 1.46582 * 125.46016 * 359.97438 * 7 3 2 9 9 O 1.21701 * 120.00296 * 353.49055 * 8 7 3 10 10 N 1.34781 * 120.00012 * 173.48717 * 8 7 3 11 11 C 1.47434 * 125.56962 * 354.36170 * 10 8 7 12 12 C 1.54851 * 104.79289 * 204.57090 * 11 10 8 13 13 C 1.55127 * 101.81051 * 322.86641 * 12 11 10 14 14 H 1.09003 * 113.45977 * 159.22158 * 13 12 11 15 15 C 1.54038 * 108.25655 * 286.07156 * 13 12 11 16 16 N 1.46703 * 106.82839 * 135.80710 * 15 13 12 17 17 C 1.36940 * 125.32483 * 161.80021 * 16 15 13 18 18 H 1.08000 * 119.99943 * 359.97438 * 17 16 15 19 19 C 1.38814 * 120.00158 * 179.97438 * 17 16 15 20 20 N 1.31613 * 119.99948 * 359.97438 * 19 17 16 21 21 Si 1.86800 * 119.99923 * 179.97438 * 19 17 16 22 22 H 1.48501 * 109.46856 * 89.99899 * 21 19 17 23 23 H 1.48497 * 109.47172 * 209.99993 * 21 19 17 24 24 H 1.48499 * 109.47024 * 329.99972 * 21 19 17 25 25 C 1.46632 * 109.35417 * 341.81653 * 16 15 13 26 26 C 1.46731 * 125.58816 * 174.38695 * 10 8 7 27 27 H 1.08997 * 111.84359 * 55.82004 * 26 10 8 28 28 H 1.09001 * 109.47117 * 59.99783 * 1 2 3 29 29 H 1.09005 * 109.47050 * 179.97438 * 1 2 3 30 30 H 1.09001 * 109.47471 * 299.99858 * 1 2 3 31 31 H 1.09000 * 109.46955 * 240.00202 * 2 1 3 32 32 H 1.09001 * 109.47117 * 120.00217 * 2 1 3 33 33 H 1.08000 * 122.45688 * 359.97438 * 4 3 2 34 34 H 1.07997 * 124.52620 * 180.02562 * 5 4 3 35 35 H 1.09008 * 110.35297 * 85.76229 * 11 10 8 36 36 H 1.09003 * 110.40870 * 323.41607 * 11 10 8 37 37 H 1.09001 * 110.97196 * 204.72286 * 12 11 10 38 38 H 1.09001 * 110.96629 * 81.00652 * 12 11 10 39 39 H 1.08999 * 109.98847 * 255.14678 * 15 13 12 40 40 H 1.09000 * 109.99246 * 16.46438 * 15 13 12 41 41 H 0.96995 * 120.00056 * 179.97438 * 20 19 17 42 42 H 1.09003 * 109.75420 * 120.93113 * 25 16 15 43 43 H 1.09000 * 109.75961 * 241.62649 * 25 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4209 0.0000 4 6 2.3789 2.0999 -1.1439 5 6 2.8051 3.3540 -0.9525 6 16 2.7861 3.7585 0.7048 7 6 2.1889 2.1623 1.1371 8 6 1.8994 1.7026 2.4986 9 8 1.3725 0.6201 2.6762 10 7 2.2169 2.4788 3.5537 11 6 2.9595 3.7508 3.4900 12 6 3.5985 3.9063 4.8919 13 6 2.4861 3.3392 5.8125 14 1 2.8508 3.0239 6.7902 15 6 1.3479 4.3743 5.8879 16 7 0.0898 3.6331 5.7465 17 6 -1.1480 4.0991 6.1015 18 1 -1.2520 5.0875 6.5243 19 6 -2.2690 3.3012 5.9181 20 7 -2.1423 2.0969 5.4024 21 14 -3.9573 3.9367 6.4031 22 1 -4.5732 4.6371 5.2476 23 1 -4.8182 2.7961 6.8069 24 1 -3.8224 4.8819 7.5404 25 6 0.3649 2.3150 5.1658 26 6 1.8806 2.1960 4.9537 27 1 2.2506 1.2210 5.2707 28 1 -0.3633 0.5139 -0.8900 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3634 0.5138 0.8900 31 1 1.8933 -0.5138 -0.8900 32 1 1.8934 -0.5139 0.8900 33 1 2.3131 1.6537 -2.1252 34 1 3.1146 4.0225 -1.7423 35 1 2.2783 4.5779 3.2898 36 1 3.7331 3.7014 2.7237 37 1 3.7946 4.9545 5.1173 38 1 4.5106 3.3149 4.9725 39 1 1.3727 4.8860 6.8499 40 1 1.4474 5.0972 5.0782 41 1 -2.9255 1.5392 5.2746 42 1 0.0257 1.5344 5.8468 43 1 -0.1497 2.2188 4.2098 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001076598388.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:29:31 Heat of formation + Delta-G solvation = 32.496843 kcal Electronic energy + Delta-G solvation = -25813.946414 eV Core-core repulsion = 22372.618250 eV Total energy + Delta-G solvation = -3441.328164 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 320.130 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -40.23932 -38.75912 -37.09942 -34.79899 -32.60502 -32.21874 -30.87441 -29.72009 -28.35311 -26.43888 -25.10436 -24.70770 -22.76234 -22.18205 -21.25128 -20.07918 -19.17443 -18.08817 -17.64689 -16.77004 -16.20931 -15.54008 -15.28091 -14.81403 -14.33067 -14.17815 -13.90916 -13.75089 -13.57098 -13.18687 -13.04588 -12.72116 -12.60769 -12.24850 -12.10755 -11.92710 -11.74870 -11.56664 -11.44163 -11.08414 -11.00353 -10.79340 -10.64093 -10.47576 -10.44060 -10.23097 -10.12752 -9.85619 -9.67794 -9.41836 -8.73155 -8.56364 -8.42928 -8.07814 -6.78458 -5.64829 -3.00776 0.64695 1.58796 1.99280 2.48788 3.30110 3.42823 3.47122 3.49943 3.55293 4.51472 4.64058 4.73727 4.85905 5.07363 5.11009 5.24016 5.29437 5.47427 5.48341 5.51742 5.58037 5.67871 5.72566 5.74501 5.83776 5.86016 5.91428 6.00502 6.10447 6.18752 6.21803 6.33833 6.40607 6.48396 6.55558 6.60887 6.63911 6.69518 6.88063 7.57785 7.68029 7.89696 7.95744 8.32157 8.56485 9.26585 9.87636 10.50982 11.45102 Molecular weight = 320.13amu Principal moments of inertia in cm(-1) A = 0.013337 B = 0.004918 C = 0.004195 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2098.910532 B = 5692.185773 C = 6672.494170 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.066 4.066 3 C -0.027 4.027 4 C -0.144 4.144 5 C -0.254 4.254 6 S 0.207 5.793 7 C -0.253 4.253 8 C 0.601 3.399 9 O -0.515 6.515 10 N -0.600 5.600 11 C 0.089 3.911 12 C -0.119 4.119 13 C -0.110 4.110 14 H 0.100 0.900 15 C 0.142 3.858 16 N -0.602 5.602 17 C -0.234 4.234 18 H 0.078 0.922 19 C -0.005 4.005 20 N -0.915 5.915 21 Si 0.910 3.090 22 H -0.289 1.289 23 H -0.290 1.290 24 H -0.281 1.281 25 C 0.177 3.823 26 C 0.117 3.883 27 H 0.082 0.918 28 H 0.045 0.955 29 H 0.056 0.944 30 H 0.068 0.932 31 H 0.064 0.936 32 H 0.090 0.910 33 H 0.138 0.862 34 H 0.163 0.837 35 H 0.076 0.924 36 H 0.074 0.926 37 H 0.084 0.916 38 H 0.073 0.927 39 H 0.035 0.965 40 H 0.018 0.982 41 H 0.253 0.747 42 H 0.053 0.947 43 H 0.053 0.947 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.711 2.234 -10.356 18.129 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.105 4.105 3 C -0.042 4.042 4 C -0.176 4.176 5 C -0.392 4.392 6 S 0.476 5.524 7 C -0.374 4.374 8 C 0.390 3.610 9 O -0.392 6.392 10 N -0.334 5.334 11 C -0.036 4.036 12 C -0.157 4.157 13 C -0.130 4.130 14 H 0.118 0.882 15 C 0.015 3.985 16 N -0.329 5.329 17 C -0.362 4.362 18 H 0.095 0.905 19 C -0.202 4.202 20 N -0.562 5.562 21 Si 0.741 3.259 22 H -0.217 1.217 23 H -0.217 1.217 24 H -0.207 1.207 25 C 0.051 3.949 26 C 0.014 3.986 27 H 0.100 0.900 28 H 0.064 0.936 29 H 0.075 0.925 30 H 0.087 0.913 31 H 0.082 0.918 32 H 0.109 0.891 33 H 0.156 0.844 34 H 0.180 0.820 35 H 0.095 0.905 36 H 0.092 0.908 37 H 0.103 0.897 38 H 0.091 0.909 39 H 0.053 0.947 40 H 0.035 0.965 41 H 0.063 0.937 42 H 0.071 0.929 43 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges 14.558 2.867 -9.529 17.634 hybrid contribution -1.294 -0.713 -0.915 1.738 sum 13.264 2.154 -10.443 17.018 Atomic orbital electron populations 1.21620 0.94057 1.01726 1.02210 1.20343 0.96771 0.90465 1.02927 1.19487 0.96614 0.97680 0.90456 1.19849 1.04007 0.94356 0.99375 1.25510 1.08648 1.01376 1.03624 1.83329 1.59973 1.12225 0.96849 1.24507 1.16157 0.99004 0.97698 1.16428 0.78856 0.83952 0.81807 1.90820 1.42907 1.20702 1.84806 1.48212 1.55800 1.22303 1.07041 1.22474 0.95375 0.87424 0.98307 1.22722 0.97796 1.01913 0.93309 1.23163 0.95453 0.96364 0.98012 0.88188 1.21305 0.85903 0.93098 0.98145 1.44212 1.01528 1.13498 1.73637 1.19000 0.82334 0.99263 1.35594 0.90451 1.24829 0.97896 0.96416 1.01095 1.69983 1.28273 1.08787 1.49151 0.86149 0.84243 0.77517 0.78011 1.21675 1.21656 1.20688 1.21249 0.86593 0.87947 0.99088 1.22607 0.99465 0.97719 0.78813 0.90046 0.93580 0.92513 0.91327 0.91785 0.89112 0.84389 0.81983 0.90549 0.90784 0.89711 0.90855 0.94667 0.96478 0.93655 0.92890 0.92884 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.09 9.74 37.16 0.36 -1.73 16 2 C -0.07 -0.94 5.48 -27.88 -0.15 -1.09 16 3 C -0.03 -0.41 5.16 -105.48 -0.54 -0.95 16 4 C -0.14 -1.75 9.96 -41.41 -0.41 -2.16 16 5 C -0.25 -2.81 10.92 29.18 0.32 -2.50 16 6 S 0.21 2.57 18.69 -107.50 -2.01 0.56 16 7 C -0.25 -4.11 6.33 -36.79 -0.23 -4.34 16 8 C 0.60 11.66 7.26 -12.89 -0.09 11.56 16 9 O -0.51 -11.44 13.69 5.19 0.07 -11.37 16 10 N -0.60 -10.91 2.98 -163.94 -0.49 -11.40 16 11 C 0.09 1.26 4.80 -2.56 -0.01 1.25 16 12 C -0.12 -1.48 6.34 -24.63 -0.16 -1.63 16 13 C -0.11 -1.80 4.33 -87.74 -0.38 -2.18 16 14 H 0.10 1.47 8.14 -51.93 -0.42 1.05 16 15 C 0.14 2.82 6.45 -3.39 -0.02 2.80 16 16 N -0.60 -15.47 3.38 -172.01 -0.58 -16.05 16 17 C -0.23 -6.59 10.25 -15.06 -0.15 -6.74 16 18 H 0.08 2.09 7.83 -52.49 -0.41 1.68 16 19 C -0.01 -0.16 5.48 -17.43 -0.10 -0.25 16 20 N -0.92 -27.90 10.24 55.49 0.57 -27.34 16 21 Si 0.91 22.56 29.55 -169.99 -5.02 17.53 16 22 H -0.29 -7.18 7.11 56.52 0.40 -6.78 16 23 H -0.29 -7.26 7.11 56.52 0.40 -6.86 16 24 H -0.28 -6.73 7.11 56.52 0.40 -6.33 16 25 C 0.18 4.49 4.98 -3.71 -0.02 4.47 16 26 C 0.12 2.31 3.58 -66.33 -0.24 2.07 16 27 H 0.08 1.58 8.14 -51.93 -0.42 1.15 16 28 H 0.05 0.62 8.14 -51.93 -0.42 0.20 16 29 H 0.06 0.77 8.14 -51.93 -0.42 0.35 16 30 H 0.07 1.29 7.32 -51.93 -0.38 0.91 16 31 H 0.06 0.74 8.12 -51.93 -0.42 0.31 16 32 H 0.09 1.47 6.50 -51.93 -0.34 1.13 16 33 H 0.14 1.34 8.06 -52.49 -0.42 0.92 16 34 H 0.16 1.32 8.06 -52.49 -0.42 0.90 16 35 H 0.08 1.15 6.99 -51.92 -0.36 0.79 16 36 H 0.07 0.89 5.75 -39.04 -0.22 0.67 16 37 H 0.08 0.88 8.08 -51.93 -0.42 0.46 16 38 H 0.07 0.79 8.14 -51.93 -0.42 0.37 16 39 H 0.04 0.68 8.14 -51.93 -0.42 0.26 16 40 H 0.02 0.34 6.52 -51.93 -0.34 0.00 16 41 H 0.25 7.55 8.31 -40.82 -0.34 7.21 16 42 H 0.05 1.51 7.33 -51.93 -0.38 1.13 16 43 H 0.05 1.56 6.82 -51.93 -0.35 1.21 16 LS Contribution 345.48 15.07 5.21 5.21 Total: -1.00 -33.30 345.48 -10.24 -43.53 By element: Atomic # 1 Polarization: 6.89 SS G_CDS: -6.15 Total: 0.74 kcal Atomic # 6 Polarization: 0.41 SS G_CDS: -1.83 Total: -1.42 kcal Atomic # 7 Polarization: -54.28 SS G_CDS: -0.50 Total: -54.79 kcal Atomic # 8 Polarization: -11.44 SS G_CDS: 0.07 Total: -11.37 kcal Atomic # 14 Polarization: 22.56 SS G_CDS: -5.02 Total: 17.53 kcal Atomic # 16 Polarization: 2.57 SS G_CDS: -2.01 Total: 0.56 kcal Total LS contribution 5.21 Total: 5.21 kcal Total: -33.30 -10.24 -43.53 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001076598388.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 76.030 kcal (2) G-P(sol) polarization free energy of solvation -33.296 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 42.734 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.237 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.533 kcal (6) G-S(sol) free energy of system = (1) + (5) 32.497 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds