Wall clock time and date at job start Tue Mar 31 2020 12:21:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 C 1.32766 * 123.46217 * 2 1 4 4 S 1.75510 * 110.57817 * 180.22718 * 3 2 1 5 5 C 1.70447 * 92.44130 * 359.74133 * 4 3 2 6 6 C 1.36003 * 110.81991 * 359.97438 * 5 4 3 7 7 C 1.47192 * 123.46272 * 179.97438 * 6 5 4 8 8 O 1.21639 * 120.00088 * 180.02562 * 7 6 5 9 9 N 1.34784 * 119.99964 * 0.02562 * 7 6 5 10 10 C 1.46492 * 119.99952 * 180.02562 * 9 7 6 11 11 H 1.08997 * 112.95536 * 23.58785 * 10 9 7 12 12 C 1.53958 * 113.65816 * 252.18349 * 10 9 7 13 13 C 1.53946 * 87.29612 * 270.25984 * 12 10 9 14 14 H 1.08998 * 113.74660 * 89.74793 * 13 12 10 15 15 N 1.46497 * 113.66666 * 220.79618 * 13 12 10 16 16 C 1.36939 * 120.00358 * 252.18812 * 15 13 12 17 17 H 1.07997 * 119.99395 * 359.97438 * 16 15 13 18 18 C 1.38809 * 120.00162 * 179.97438 * 16 15 13 19 19 N 1.31615 * 120.00135 * 359.97438 * 18 16 15 20 20 Si 1.86803 * 119.99705 * 180.02562 * 18 16 15 21 21 H 1.48492 * 109.47352 * 90.00227 * 20 18 16 22 22 H 1.48506 * 109.46668 * 209.99786 * 20 18 16 23 23 H 1.48496 * 109.47310 * 329.99501 * 20 18 16 24 24 C 1.52907 * 113.66406 * 154.99852 * 10 9 7 25 25 C 1.52909 * 121.13536 * 323.85453 * 24 10 9 26 26 C 1.53952 * 86.78252 * 209.38099 * 25 24 10 27 27 C 1.53064 * 121.17777 * 215.21812 * 24 10 9 28 28 H 1.08999 * 109.47033 * 270.23731 * 1 2 3 29 29 H 1.09008 * 109.46735 * 30.23400 * 1 2 3 30 30 H 1.09004 * 109.47312 * 150.22997 * 1 2 3 31 31 H 1.08007 * 124.71322 * 359.93065 * 3 2 1 32 32 H 1.08004 * 124.58805 * 180.02562 * 5 4 3 33 33 H 0.96995 * 119.99451 * 359.97438 * 9 7 6 34 34 H 1.09000 * 113.57861 * 155.66000 * 12 10 9 35 35 H 1.08997 * 113.58119 * 24.86399 * 12 10 9 36 36 H 0.97002 * 119.99897 * 72.18620 * 15 13 12 37 37 H 0.97003 * 120.00028 * 180.02562 * 19 18 16 38 38 H 1.09000 * 113.66588 * 94.90895 * 25 24 10 39 39 H 1.09002 * 113.66049 * 323.84790 * 25 24 10 40 40 H 1.09002 * 113.58142 * 139.33437 * 26 25 24 41 41 H 1.09004 * 113.57653 * 270.05037 * 26 25 24 42 42 H 1.09006 * 113.66264 * 36.13819 * 27 24 10 43 43 H 1.09001 * 113.71778 * 265.03884 * 27 24 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2390 1.1076 0.0000 4 16 3.9499 0.7163 -0.0065 5 6 3.6410 -0.9600 -0.0015 6 6 2.3032 -1.2050 0.0054 7 6 1.7261 -2.5590 0.0105 8 8 0.5186 -2.7055 0.0161 9 7 2.5357 -3.6366 0.0089 10 6 1.9613 -4.9842 0.0134 11 1 0.9468 -5.0153 -0.3840 12 6 2.1214 -5.7196 1.3565 13 6 3.4620 -6.2542 0.8208 14 1 4.3122 -5.6095 1.0436 15 7 3.7099 -7.6592 1.1532 16 6 4.6524 -7.9848 2.0918 17 1 5.2132 -7.2058 2.5866 18 6 4.8868 -9.3161 2.4071 19 7 4.2030 -10.2655 1.8044 20 14 6.1720 -9.7602 3.6880 21 1 5.5368 -9.8125 5.0292 22 1 6.7554 -11.0870 3.3646 23 1 7.2456 -8.7343 3.6884 24 6 2.8859 -6.0475 -0.5805 25 6 3.7934 -5.7309 -1.7698 26 6 3.6608 -7.2155 -2.1550 27 6 2.3271 -7.2229 -1.3861 28 1 -0.3633 0.0043 1.0276 29 1 -0.3633 0.8880 -0.5175 30 1 -0.3634 -0.8921 -0.5103 31 1 1.8375 2.1103 -0.0011 32 1 4.4043 -1.7241 -0.0027 33 1 3.4985 -3.5198 0.0041 34 1 1.3756 -6.4976 1.5193 35 1 2.2287 -5.0502 2.2100 36 1 3.2064 -8.3589 0.7084 37 1 4.3666 -11.1958 2.0250 38 1 4.8047 -5.4419 -1.4836 39 1 3.3452 -5.0496 -2.4930 40 1 3.5473 -7.3795 -3.2267 41 1 4.4250 -7.8518 -1.7086 42 1 1.4660 -6.9617 -2.0013 43 1 2.1685 -8.1242 -0.7940 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001078589871.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:21:45 Heat of formation + Delta-G solvation = 48.662804 kcal Electronic energy + Delta-G solvation = -24694.715267 eV Core-core repulsion = 21254.088111 eV Total energy + Delta-G solvation = -3440.627156 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 320.130 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -40.69033 -39.39557 -37.15205 -35.02580 -34.10716 -32.57788 -31.01731 -29.72712 -27.81380 -25.49215 -25.06382 -24.18681 -24.08355 -22.28442 -21.15173 -20.05176 -19.10452 -18.08817 -17.72810 -17.10501 -16.81199 -15.78691 -15.22733 -14.95238 -14.86901 -14.52166 -13.92153 -13.85030 -13.59119 -13.41257 -13.28050 -12.81457 -12.60403 -12.46074 -12.22655 -12.03046 -11.99556 -11.78525 -11.68721 -11.34607 -11.10971 -10.90463 -10.82634 -10.60151 -10.18650 -10.13799 -9.85946 -9.79498 -9.60237 -9.39562 -9.14202 -8.86783 -8.74478 -8.48928 -6.99195 -5.81964 -3.10490 0.56045 1.31965 1.68867 1.83104 3.20373 3.33827 3.40294 3.45684 3.47083 4.44128 4.54823 4.78180 4.83383 4.96970 5.02696 5.09222 5.10420 5.24470 5.28109 5.36939 5.43787 5.48226 5.64359 5.68565 5.81562 5.83536 5.95127 6.00514 6.04575 6.05659 6.10848 6.16117 6.29836 6.38128 6.43192 6.50845 6.56952 6.65592 6.88062 6.92911 7.05549 7.62044 7.65723 8.29866 8.36824 9.48459 10.05700 10.40595 11.40266 Molecular weight = 320.13amu Principal moments of inertia in cm(-1) A = 0.016647 B = 0.003133 C = 0.002933 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1681.625752 B = 8936.085880 C = 9545.687579 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.101 4.101 2 C -0.050 4.050 3 C -0.248 4.248 4 S 0.179 5.821 5 C -0.209 4.209 6 C -0.149 4.149 7 C 0.577 3.423 8 O -0.536 6.536 9 N -0.697 5.697 10 C 0.130 3.870 11 H 0.097 0.903 12 C -0.174 4.174 13 C 0.191 3.809 14 H 0.075 0.925 15 N -0.707 5.707 16 C -0.245 4.245 17 H 0.070 0.930 18 C -0.010 4.010 19 N -0.931 5.931 20 Si 0.906 3.094 21 H -0.290 1.290 22 H -0.291 1.291 23 H -0.282 1.282 24 C -0.121 4.121 25 C -0.126 4.126 26 C -0.131 4.131 27 C -0.109 4.109 28 H 0.071 0.929 29 H 0.061 0.939 30 H 0.093 0.907 31 H 0.167 0.833 32 H 0.171 0.829 33 H 0.398 0.602 34 H 0.086 0.914 35 H 0.058 0.942 36 H 0.387 0.613 37 H 0.256 0.744 38 H 0.063 0.937 39 H 0.072 0.928 40 H 0.056 0.944 41 H 0.090 0.910 42 H 0.074 0.926 43 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.354 21.303 -7.507 22.709 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C -0.061 4.061 3 C -0.382 4.382 4 S 0.446 5.554 5 C -0.348 4.348 6 C -0.167 4.167 7 C 0.362 3.638 8 O -0.414 6.414 9 N -0.346 5.346 10 C 0.025 3.975 11 H 0.115 0.885 12 C -0.217 4.217 13 C 0.079 3.921 14 H 0.092 0.908 15 N -0.346 5.346 16 C -0.376 4.376 17 H 0.088 0.912 18 C -0.207 4.207 19 N -0.579 5.579 20 Si 0.737 3.263 21 H -0.217 1.217 22 H -0.218 1.218 23 H -0.208 1.208 24 C -0.124 4.124 25 C -0.164 4.164 26 C -0.168 4.168 27 C -0.147 4.147 28 H 0.090 0.910 29 H 0.080 0.920 30 H 0.112 0.888 31 H 0.185 0.815 32 H 0.188 0.812 33 H 0.232 0.768 34 H 0.105 0.895 35 H 0.077 0.923 36 H 0.223 0.777 37 H 0.066 0.934 38 H 0.082 0.918 39 H 0.090 0.910 40 H 0.075 0.925 41 H 0.108 0.892 42 H 0.092 0.908 43 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges -1.702 22.007 -7.373 23.271 hybrid contribution -0.157 -1.372 0.697 1.547 sum -1.859 20.635 -6.676 21.768 Atomic orbital electron populations 1.20661 0.88652 1.03668 1.02961 1.19886 0.97594 0.89863 0.98741 1.25296 0.96371 1.02593 1.13984 1.83001 1.05729 0.96930 1.69741 1.25678 0.99731 1.02829 1.06524 1.20243 0.92055 0.94535 1.09894 1.17545 0.86415 0.83429 0.76363 1.90731 1.14040 1.86366 1.50288 1.45465 1.09659 1.05314 1.74122 1.21726 0.97525 0.79579 0.98678 0.88484 1.24277 1.02348 0.99406 0.95620 1.21281 0.93443 0.88120 0.89289 0.90759 1.42397 1.45053 1.00512 1.46658 1.19274 1.12786 0.91531 1.13986 0.91216 1.24736 1.00003 0.95725 1.00193 1.69650 1.43672 0.99362 1.45174 0.86213 0.81158 0.77538 0.81398 1.21698 1.21781 1.20785 1.23624 0.97128 0.95784 0.95861 1.22640 0.99258 0.97074 0.97401 1.22738 0.98514 0.96633 0.98941 1.22477 0.96798 0.97916 0.97549 0.90997 0.92034 0.88838 0.81526 0.81189 0.76783 0.89519 0.92284 0.77671 0.93425 0.91828 0.90968 0.92498 0.89184 0.90753 0.90237 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.06 9.54 36.00 0.34 -0.72 16 2 C -0.05 -0.55 6.01 -104.06 -0.63 -1.18 16 3 C -0.25 -2.18 10.91 28.86 0.31 -1.86 16 4 S 0.18 1.41 23.02 -107.50 -2.48 -1.07 16 5 C -0.21 -2.00 10.38 29.93 0.31 -1.69 16 6 C -0.15 -1.79 5.98 -104.63 -0.63 -2.42 16 7 C 0.58 8.33 7.79 -12.62 -0.10 8.23 16 8 O -0.54 -9.24 13.81 5.24 0.07 -9.17 16 9 N -0.70 -9.35 5.02 -54.52 -0.27 -9.63 16 10 C 0.13 2.01 4.13 -67.48 -0.28 1.73 16 11 H 0.10 1.60 7.46 -51.93 -0.39 1.21 16 12 C -0.17 -3.09 7.68 -25.75 -0.20 -3.29 16 13 C 0.19 3.61 4.27 -67.48 -0.29 3.32 16 14 H 0.07 1.38 8.10 -51.93 -0.42 0.96 16 15 N -0.71 -16.87 5.32 -52.99 -0.28 -17.15 16 16 C -0.24 -6.56 9.97 -15.06 -0.15 -6.71 16 17 H 0.07 1.82 7.83 -52.49 -0.41 1.41 16 18 C -0.01 -0.29 5.50 -17.43 -0.10 -0.38 16 19 N -0.93 -27.37 13.06 55.49 0.72 -26.65 16 20 Si 0.91 21.96 29.55 -169.99 -5.02 16.93 16 21 H -0.29 -7.05 7.11 56.52 0.40 -6.65 16 22 H -0.29 -7.14 7.11 56.52 0.40 -6.74 16 23 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 24 C -0.12 -1.91 0.92 -154.63 -0.14 -2.05 16 25 C -0.13 -1.77 7.49 -26.28 -0.20 -1.97 16 26 C -0.13 -2.01 8.08 -25.75 -0.21 -2.21 16 27 C -0.11 -1.74 7.48 -26.20 -0.20 -1.94 16 28 H 0.07 0.75 8.14 -51.93 -0.42 0.32 16 29 H 0.06 0.50 8.13 -51.92 -0.42 0.08 16 30 H 0.09 1.19 6.03 -51.93 -0.31 0.88 16 31 H 0.17 1.07 8.06 -52.48 -0.42 0.64 16 32 H 0.17 1.30 7.01 -52.48 -0.37 0.93 16 33 H 0.40 4.55 7.11 -40.82 -0.29 4.26 16 34 H 0.09 1.65 8.14 -51.93 -0.42 1.22 16 35 H 0.06 1.05 8.14 -51.93 -0.42 0.63 16 36 H 0.39 9.79 5.91 -40.82 -0.24 9.55 16 37 H 0.26 7.32 8.31 -40.82 -0.34 6.98 16 38 H 0.06 0.88 8.14 -51.93 -0.42 0.45 16 39 H 0.07 0.93 8.14 -51.93 -0.42 0.50 16 40 H 0.06 0.77 8.14 -51.93 -0.42 0.34 16 41 H 0.09 1.62 8.14 -51.93 -0.42 1.20 16 42 H 0.07 1.05 8.14 -51.93 -0.42 0.63 16 43 H 0.08 1.45 6.41 -51.93 -0.33 1.12 16 LS Contribution 362.74 15.07 5.47 5.47 Total: -1.00 -30.65 362.74 -10.05 -40.70 By element: Atomic # 1 Polarization: 19.83 SS G_CDS: -6.13 Total: 13.70 kcal Atomic # 6 Polarization: -11.01 SS G_CDS: -2.13 Total: -13.14 kcal Atomic # 7 Polarization: -53.60 SS G_CDS: 0.17 Total: -53.43 kcal Atomic # 8 Polarization: -9.24 SS G_CDS: 0.07 Total: -9.17 kcal Atomic # 14 Polarization: 21.96 SS G_CDS: -5.02 Total: 16.93 kcal Atomic # 16 Polarization: 1.41 SS G_CDS: -2.48 Total: -1.07 kcal Total LS contribution 5.47 Total: 5.47 kcal Total: -30.65 -10.05 -40.70 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001078589871.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 89.364 kcal (2) G-P(sol) polarization free energy of solvation -30.650 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 58.715 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.052 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.701 kcal (6) G-S(sol) free energy of system = (1) + (5) 48.663 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds