Wall clock time and date at job start Tue Mar 31 2020 12:21:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 C 1.32766 * 123.46217 * 2 1 4 4 S 1.75510 * 110.57817 * 180.22718 * 3 2 1 5 5 C 1.70447 * 92.44130 * 359.74133 * 4 3 2 6 6 C 1.36003 * 110.81991 * 359.97438 * 5 4 3 7 7 C 1.47192 * 123.46272 * 179.97438 * 6 5 4 8 8 O 1.21639 * 120.00088 * 180.02562 * 7 6 5 9 9 N 1.34784 * 119.99964 * 0.02562 * 7 6 5 10 10 C 1.46492 * 119.99952 * 180.02562 * 9 7 6 11 11 H 1.08997 * 112.95536 * 23.58785 * 10 9 7 12 12 C 1.53958 * 113.65816 * 252.18349 * 10 9 7 13 13 C 1.53946 * 87.29612 * 270.25984 * 12 10 9 14 14 H 1.08998 * 113.74660 * 89.74793 * 13 12 10 15 15 N 1.46497 * 113.66666 * 220.79618 * 13 12 10 16 16 C 1.36939 * 120.00358 * 252.18812 * 15 13 12 17 17 H 1.07997 * 119.99395 * 359.97438 * 16 15 13 18 18 C 1.38809 * 120.00162 * 179.97438 * 16 15 13 19 19 N 1.31615 * 120.00135 * 359.97438 * 18 16 15 20 20 Si 1.86803 * 119.99705 * 180.02562 * 18 16 15 21 21 H 1.48492 * 109.47352 * 90.00227 * 20 18 16 22 22 H 1.48506 * 109.46668 * 209.99786 * 20 18 16 23 23 H 1.48496 * 109.47310 * 329.99501 * 20 18 16 24 24 C 1.52907 * 113.66406 * 154.99852 * 10 9 7 25 25 C 1.52909 * 121.13536 * 323.85453 * 24 10 9 26 26 C 1.53952 * 86.78252 * 209.38099 * 25 24 10 27 27 C 1.53064 * 121.17777 * 215.21812 * 24 10 9 28 28 H 1.08999 * 109.47033 * 270.23731 * 1 2 3 29 29 H 1.09008 * 109.46735 * 30.23400 * 1 2 3 30 30 H 1.09004 * 109.47312 * 150.22997 * 1 2 3 31 31 H 1.08007 * 124.71322 * 359.93065 * 3 2 1 32 32 H 1.08004 * 124.58805 * 180.02562 * 5 4 3 33 33 H 0.96995 * 119.99451 * 359.97438 * 9 7 6 34 34 H 1.09000 * 113.57861 * 155.66000 * 12 10 9 35 35 H 1.08997 * 113.58119 * 24.86399 * 12 10 9 36 36 H 0.97002 * 119.99897 * 72.18620 * 15 13 12 37 37 H 0.97003 * 120.00028 * 180.02562 * 19 18 16 38 38 H 1.09000 * 113.66588 * 94.90895 * 25 24 10 39 39 H 1.09002 * 113.66049 * 323.84790 * 25 24 10 40 40 H 1.09002 * 113.58142 * 139.33437 * 26 25 24 41 41 H 1.09004 * 113.57653 * 270.05037 * 26 25 24 42 42 H 1.09006 * 113.66264 * 36.13819 * 27 24 10 43 43 H 1.09001 * 113.71778 * 265.03884 * 27 24 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2390 1.1076 0.0000 4 16 3.9499 0.7163 -0.0065 5 6 3.6410 -0.9600 -0.0015 6 6 2.3032 -1.2050 0.0054 7 6 1.7261 -2.5590 0.0105 8 8 0.5186 -2.7055 0.0161 9 7 2.5357 -3.6366 0.0089 10 6 1.9613 -4.9842 0.0134 11 1 0.9468 -5.0153 -0.3840 12 6 2.1214 -5.7196 1.3565 13 6 3.4620 -6.2542 0.8208 14 1 4.3122 -5.6095 1.0436 15 7 3.7099 -7.6592 1.1532 16 6 4.6524 -7.9848 2.0918 17 1 5.2132 -7.2058 2.5866 18 6 4.8868 -9.3161 2.4071 19 7 4.2030 -10.2655 1.8044 20 14 6.1720 -9.7602 3.6880 21 1 5.5368 -9.8125 5.0292 22 1 6.7554 -11.0870 3.3646 23 1 7.2456 -8.7343 3.6884 24 6 2.8859 -6.0475 -0.5805 25 6 3.7934 -5.7309 -1.7698 26 6 3.6608 -7.2155 -2.1550 27 6 2.3271 -7.2229 -1.3861 28 1 -0.3633 0.0043 1.0276 29 1 -0.3633 0.8880 -0.5175 30 1 -0.3634 -0.8921 -0.5103 31 1 1.8375 2.1103 -0.0011 32 1 4.4043 -1.7241 -0.0027 33 1 3.4985 -3.5198 0.0041 34 1 1.3756 -6.4976 1.5193 35 1 2.2287 -5.0502 2.2100 36 1 3.2064 -8.3589 0.7084 37 1 4.3666 -11.1958 2.0250 38 1 4.8047 -5.4419 -1.4836 39 1 3.3452 -5.0496 -2.4930 40 1 3.5473 -7.3795 -3.2267 41 1 4.4250 -7.8518 -1.7086 42 1 1.4660 -6.9617 -2.0013 43 1 2.1685 -8.1242 -0.7940 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001078589871.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:21:44 Heat of formation + Delta-G solvation = 30.560464 kcal Electronic energy + Delta-G solvation = -24695.500243 eV Core-core repulsion = 21254.088111 eV Total energy + Delta-G solvation = -3441.412132 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 320.130 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -41.97686 -40.48444 -38.04686 -36.36606 -35.80060 -34.01045 -32.24741 -31.26078 -28.60577 -26.76327 -26.59159 -25.59197 -25.27991 -23.77452 -22.27720 -21.29163 -20.10493 -19.57348 -18.80662 -18.33345 -17.97520 -17.06589 -16.71151 -16.37440 -16.02252 -15.87597 -15.43935 -15.14182 -14.60549 -14.45922 -14.18740 -14.04357 -13.85118 -13.55025 -13.44617 -13.30898 -13.18041 -12.99704 -12.86689 -12.78759 -12.76888 -12.47844 -12.15892 -11.91304 -11.86822 -11.81227 -11.32099 -11.18661 -10.90056 -10.80385 -10.69378 -9.99455 -9.81267 -9.22341 -8.95666 -7.93437 -5.20979 -0.20044 0.65585 0.98553 0.99276 1.47489 1.48727 1.56644 2.10717 2.32436 2.56621 3.37535 3.47561 3.66474 3.75046 3.77344 3.92331 3.96131 4.02311 4.12121 4.23394 4.26410 4.41134 4.57908 4.63646 4.67157 4.73502 4.74950 4.83291 4.85737 4.88907 4.99634 5.02270 5.08024 5.12804 5.18175 5.25615 5.30788 5.49548 5.56889 5.60140 5.63037 5.68516 6.28530 6.55889 7.22708 7.35717 8.12483 8.36004 9.29739 Molecular weight = 320.13amu Principal moments of inertia in cm(-1) A = 0.016647 B = 0.003133 C = 0.002933 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1681.625752 B = 8936.085880 C = 9545.687579 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.097 4.097 2 C -0.078 4.078 3 C -0.245 4.245 4 S 0.242 5.758 5 C -0.209 4.209 6 C -0.180 4.180 7 C 0.575 3.425 8 O -0.572 6.572 9 N -0.688 5.688 10 C 0.150 3.850 11 H 0.089 0.911 12 C -0.173 4.173 13 C 0.180 3.820 14 H 0.081 0.919 15 N -0.720 5.720 16 C -0.241 4.241 17 H 0.076 0.924 18 C -0.073 4.073 19 N -0.968 5.968 20 Si 0.968 3.032 21 H -0.291 1.291 22 H -0.298 1.298 23 H -0.268 1.268 24 C -0.112 4.112 25 C -0.109 4.109 26 C -0.130 4.130 27 C -0.113 4.113 28 H 0.065 0.935 29 H 0.083 0.917 30 H 0.066 0.934 31 H 0.192 0.808 32 H 0.188 0.812 33 H 0.409 0.591 34 H 0.068 0.932 35 H 0.056 0.944 36 H 0.377 0.623 37 H 0.250 0.750 38 H 0.071 0.929 39 H 0.095 0.905 40 H 0.080 0.920 41 H 0.057 0.943 42 H 0.096 0.904 43 H 0.048 0.952 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.742 24.406 -8.246 25.773 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C -0.089 4.089 3 C -0.379 4.379 4 S 0.510 5.490 5 C -0.348 4.348 6 C -0.199 4.199 7 C 0.363 3.637 8 O -0.453 6.453 9 N -0.338 5.338 10 C 0.044 3.956 11 H 0.107 0.893 12 C -0.215 4.215 13 C 0.069 3.931 14 H 0.099 0.901 15 N -0.358 5.358 16 C -0.373 4.373 17 H 0.094 0.906 18 C -0.265 4.265 19 N -0.619 5.619 20 Si 0.798 3.202 21 H -0.219 1.219 22 H -0.224 1.224 23 H -0.192 1.192 24 C -0.114 4.114 25 C -0.146 4.146 26 C -0.167 4.167 27 C -0.151 4.151 28 H 0.084 0.916 29 H 0.102 0.898 30 H 0.085 0.915 31 H 0.209 0.791 32 H 0.206 0.794 33 H 0.246 0.754 34 H 0.086 0.914 35 H 0.075 0.925 36 H 0.211 0.789 37 H 0.059 0.941 38 H 0.089 0.911 39 H 0.114 0.886 40 H 0.098 0.902 41 H 0.076 0.924 42 H 0.115 0.885 43 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges -0.065 25.185 -8.117 26.460 hybrid contribution -0.644 -2.191 0.925 2.464 sum -0.710 22.993 -7.191 24.102 Atomic orbital electron populations 1.20577 0.89087 1.03382 1.02534 1.19981 0.97768 0.90403 1.00715 1.25642 0.97201 1.03086 1.11998 1.82863 1.04128 0.94631 1.67394 1.26005 0.99175 1.04941 1.04647 1.20107 0.93223 0.93339 1.13221 1.17983 0.86008 0.84455 0.75302 1.90716 1.15642 1.86996 1.51962 1.45324 1.10228 1.04259 1.74004 1.21375 0.97270 0.80504 0.96499 0.89253 1.24139 1.01106 0.99240 0.97004 1.21555 0.94029 0.85752 0.91741 0.90067 1.42547 1.44568 1.02326 1.46335 1.19676 1.12379 0.91677 1.13594 0.90562 1.25492 1.02457 0.95906 1.02659 1.69808 1.45682 0.99248 1.47135 0.85213 0.79158 0.77064 0.78766 1.21880 1.22444 1.19232 1.23381 0.97283 0.95826 0.94954 1.22604 0.99275 0.96438 0.96331 1.22647 0.96929 0.97156 0.99973 1.22536 0.98157 0.96677 0.97695 0.91582 0.89809 0.91541 0.79104 0.79450 0.75407 0.91364 0.92546 0.78883 0.94124 0.91058 0.88611 0.90173 0.92372 0.88548 0.93297 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -2.02 9.54 71.23 0.68 -1.34 16 2 C -0.08 -1.62 6.01 -19.46 -0.12 -1.73 16 3 C -0.24 -3.55 10.91 66.64 0.73 -2.82 16 4 S 0.24 2.89 23.02 -56.49 -1.30 1.59 16 5 C -0.21 -3.39 10.38 67.30 0.70 -2.69 16 6 C -0.18 -4.07 5.98 -19.87 -0.12 -4.19 16 7 C 0.57 16.27 7.79 86.59 0.67 16.94 16 8 O -0.57 -20.07 13.81 -4.15 -0.06 -20.13 16 9 N -0.69 -17.61 5.02 -444.63 -2.23 -19.84 16 10 C 0.15 4.55 4.13 45.29 0.19 4.73 16 11 H 0.09 2.93 7.46 -2.39 -0.02 2.91 16 12 C -0.17 -6.22 7.68 31.23 0.24 -5.98 16 13 C 0.18 6.78 4.27 45.28 0.19 6.97 16 14 H 0.08 2.94 8.10 -2.39 -0.02 2.92 16 15 N -0.72 -35.09 5.32 -321.57 -1.71 -36.80 16 16 C -0.24 -13.06 9.97 84.03 0.84 -12.22 16 17 H 0.08 3.94 7.83 -2.91 -0.02 3.92 16 18 C -0.07 -4.12 5.50 84.86 0.47 -3.65 16 19 N -0.97 -58.65 13.06 21.65 0.28 -58.37 16 20 Si 0.97 45.64 29.55 68.60 2.03 47.67 16 21 H -0.29 -13.68 7.11 99.48 0.71 -12.98 16 22 H -0.30 -14.21 7.11 99.48 0.71 -13.50 16 23 H -0.27 -11.81 7.11 99.48 0.71 -11.10 16 24 C -0.11 -3.45 0.92 -52.26 -0.05 -3.49 16 25 C -0.11 -2.80 7.49 30.89 0.23 -2.57 16 26 C -0.13 -3.84 8.08 31.23 0.25 -3.59 16 27 C -0.11 -3.57 7.48 30.94 0.23 -3.34 16 28 H 0.07 1.38 8.14 -2.39 -0.02 1.36 16 29 H 0.08 1.27 8.13 -2.38 -0.02 1.25 16 30 H 0.07 1.75 6.03 -2.39 -0.01 1.73 16 31 H 0.19 1.71 8.06 -2.91 -0.02 1.68 16 32 H 0.19 2.21 7.01 -2.91 -0.02 2.19 16 33 H 0.41 8.46 7.11 -92.71 -0.66 7.80 16 34 H 0.07 2.70 8.14 -2.39 -0.02 2.68 16 35 H 0.06 2.02 8.14 -2.39 -0.02 2.01 16 36 H 0.38 19.87 5.91 -92.71 -0.55 19.32 16 37 H 0.25 14.77 8.31 -92.71 -0.77 14.00 16 38 H 0.07 1.76 8.14 -2.39 -0.02 1.74 16 39 H 0.10 2.09 8.14 -2.39 -0.02 2.07 16 40 H 0.08 2.00 8.14 -2.39 -0.02 1.98 16 41 H 0.06 2.11 8.14 -2.38 -0.02 2.09 16 42 H 0.10 2.62 8.14 -2.38 -0.02 2.60 16 43 H 0.05 1.86 6.41 -2.39 -0.02 1.85 16 Total: -1.00 -68.31 362.74 1.98 -66.33 By element: Atomic # 1 Polarization: 38.69 SS G_CDS: -0.17 Total: 38.53 kcal Atomic # 6 Polarization: -24.10 SS G_CDS: 5.14 Total: -18.97 kcal Atomic # 7 Polarization: -111.35 SS G_CDS: -3.66 Total: -115.01 kcal Atomic # 8 Polarization: -20.07 SS G_CDS: -0.06 Total: -20.13 kcal Atomic # 14 Polarization: 45.64 SS G_CDS: 2.03 Total: 47.67 kcal Atomic # 16 Polarization: 2.89 SS G_CDS: -1.30 Total: 1.59 kcal Total: -68.31 1.98 -66.33 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001078589871.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 96.886 kcal (2) G-P(sol) polarization free energy of solvation -68.306 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 28.580 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.980 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.325 kcal (6) G-S(sol) free energy of system = (1) + (5) 30.560 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds