Wall clock time and date at job start Tue Mar 31 2020 12:20:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50693 * 1 3 3 S 1.75509 * 124.71447 * 2 1 4 4 C 1.70442 * 92.44846 * 179.97438 * 3 2 1 5 5 C 1.36018 * 110.81645 * 359.97438 * 4 3 2 6 6 C 1.47181 * 123.45835 * 179.97438 * 5 4 3 7 7 O 1.21638 * 119.99863 * 186.25258 * 6 5 4 8 8 N 1.34776 * 120.00419 * 6.25357 * 6 5 4 9 9 C 1.47812 * 135.01002 * 355.25325 * 8 6 5 10 10 C 1.54656 * 85.79143 * 153.79037 * 9 8 6 11 11 H 1.08996 * 114.44295 * 140.42665 * 10 9 8 12 12 C 1.53019 * 110.83609 * 270.23326 * 10 9 8 13 13 C 1.53102 * 109.44813 * 143.88520 * 12 10 9 14 14 N 1.46614 * 108.00854 * 301.02783 * 13 12 10 15 15 C 1.36940 * 119.88766 * 237.30262 * 14 13 12 16 16 H 1.08004 * 120.00048 * 148.51075 * 15 14 13 17 17 C 1.38812 * 120.00090 * 328.51206 * 15 14 13 18 18 N 1.31618 * 119.99846 * 340.30645 * 17 15 14 19 19 Si 1.86797 * 119.99946 * 160.31105 * 17 15 14 20 20 H 1.48498 * 109.47059 * 179.97438 * 19 17 15 21 21 H 1.48503 * 109.47236 * 59.99974 * 19 17 15 22 22 H 1.48498 * 109.47295 * 299.99936 * 19 17 15 23 23 C 1.45674 * 120.22199 * 57.58383 * 14 13 12 24 24 C 1.46814 * 135.01487 * 175.23244 * 8 6 5 25 25 H 1.08997 * 111.57058 * 94.50200 * 24 8 6 26 26 C 1.32777 * 124.71557 * 180.29415 * 2 1 3 27 27 C 1.50705 * 123.45391 * 359.97438 * 26 2 1 28 28 H 1.08998 * 109.47381 * 0.02870 * 1 2 3 29 29 H 1.09002 * 109.47137 * 120.03020 * 1 2 3 30 30 H 1.09001 * 109.47458 * 240.02428 * 1 2 3 31 31 H 1.07997 * 124.59435 * 180.02562 * 4 3 2 32 32 H 1.08999 * 113.81748 * 39.57476 * 9 8 6 33 33 H 1.09003 * 113.93153 * 268.01816 * 9 8 6 34 34 H 1.09002 * 109.47175 * 23.89257 * 12 10 9 35 35 H 1.08995 * 109.47519 * 263.88092 * 12 10 9 36 36 H 1.08997 * 109.75109 * 181.39814 * 13 12 10 37 37 H 1.09000 * 109.79250 * 60.67793 * 13 12 10 38 38 H 0.96995 * 120.00321 * 353.84197 * 18 17 15 39 39 H 1.09000 * 108.71613 * 81.48524 * 23 14 13 40 40 H 1.08997 * 108.71683 * 199.50622 * 23 14 13 41 41 H 1.09000 * 109.46782 * 270.20773 * 27 26 2 42 42 H 1.08997 * 109.47240 * 30.21611 * 27 26 2 43 43 H 1.09005 * 109.46560 * 150.21413 * 27 26 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 16 2.5064 1.4427 0.0000 4 6 3.9476 0.5328 0.0008 5 6 3.6776 -0.8003 0.0016 6 6 4.7200 -1.8394 0.0018 7 8 4.4115 -3.0104 -0.1122 8 7 6.0165 -1.4934 0.1284 9 6 6.7554 -0.2151 0.1968 10 6 7.8227 -1.0057 0.9892 11 1 8.8520 -0.7438 0.7443 12 6 7.5257 -0.9673 2.4898 13 6 7.9060 -2.3102 3.1191 14 7 7.1265 -3.3591 2.4546 15 6 6.3153 -4.1783 3.1936 16 1 5.4075 -4.5723 2.7611 17 6 6.6598 -4.5023 4.4987 18 7 7.9046 -4.3656 4.9040 19 14 5.3569 -5.1324 5.6796 20 1 5.9768 -5.4047 7.0013 21 1 4.7665 -6.3849 5.1430 22 1 4.2917 -4.1093 5.8333 23 6 7.2166 -3.5367 1.0115 24 6 7.2801 -2.2299 0.2557 25 1 7.7639 -2.3659 -0.7115 26 6 2.2631 -1.0914 -0.0056 27 6 1.7027 -2.4904 -0.0122 28 1 -0.3634 1.0276 -0.0005 29 1 -0.3633 -0.5143 -0.8897 30 1 -0.3634 -0.5134 0.8902 31 1 4.9407 0.9572 0.0014 32 1 6.2518 0.5536 0.7829 33 1 7.1037 0.1466 -0.7706 34 1 6.4631 -0.7809 2.6452 35 1 8.1063 -0.1706 2.9548 36 1 7.6734 -2.2969 4.1839 37 1 8.9705 -2.4962 2.9769 38 1 8.5975 -4.1247 4.2695 39 1 8.1100 -4.1192 0.7860 40 1 6.3438 -4.0947 0.6726 41 1 1.5645 -2.8312 1.0139 42 1 0.7430 -2.4949 -0.5291 43 1 2.3954 -3.1567 -0.5263 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001084369967.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:20:41 Heat of formation + Delta-G solvation = 58.296468 kcal Electronic energy + Delta-G solvation = -25778.421264 eV Core-core repulsion = 22338.211855 eV Total energy + Delta-G solvation = -3440.209409 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 320.130 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -40.72575 -38.68618 -36.83977 -35.57203 -32.73982 -31.58160 -30.99150 -29.45533 -28.66777 -26.98687 -25.52656 -24.34059 -23.63212 -22.81746 -21.07859 -19.96544 -18.57745 -17.87915 -17.37382 -17.17329 -16.29713 -15.73562 -15.26621 -14.57760 -14.47842 -14.16451 -13.91969 -13.51352 -13.48822 -13.28266 -13.20601 -12.80318 -12.63094 -12.59608 -12.42364 -12.10968 -11.91406 -11.80401 -11.75758 -11.64469 -11.01109 -10.83588 -10.80676 -10.66505 -10.48235 -10.07484 -9.94057 -9.86974 -9.26047 -9.04498 -8.65819 -8.45534 -8.34515 -8.18876 -6.76967 -5.95028 -3.19769 0.79450 1.50167 1.87836 2.07922 3.05100 3.55557 3.57449 3.63961 3.75868 4.51013 4.55901 4.67402 4.73100 4.97474 5.08986 5.13991 5.19595 5.26241 5.36204 5.38455 5.39712 5.51998 5.61516 5.62023 5.72093 5.76013 5.77783 5.90845 5.93781 5.95604 6.11502 6.16895 6.29377 6.36908 6.46758 6.52046 6.68593 6.76215 6.90571 7.07807 7.23187 8.06393 8.18532 8.56892 8.68686 9.22920 9.93851 10.33852 11.31160 Molecular weight = 320.13amu Principal moments of inertia in cm(-1) A = 0.013292 B = 0.004829 C = 0.004075 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2106.054401 B = 5797.377465 C = 6869.279327 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.075 4.075 2 C -0.213 4.213 3 S 0.159 5.841 4 C -0.224 4.224 5 C -0.131 4.131 6 C 0.601 3.399 7 O -0.525 6.525 8 N -0.623 5.623 9 C 0.087 3.913 10 C -0.105 4.105 11 H 0.090 0.910 12 C -0.120 4.120 13 C 0.149 3.851 14 N -0.589 5.589 15 C -0.336 4.336 16 H 0.054 0.946 17 C -0.026 4.026 18 N -0.925 5.925 19 Si 1.066 2.934 20 H -0.285 1.285 21 H -0.293 1.293 22 H -0.295 1.295 23 C 0.143 3.857 24 C 0.134 3.866 25 H 0.077 0.923 26 C -0.054 4.054 27 C -0.101 4.101 28 H 0.064 0.936 29 H 0.074 0.926 30 H 0.075 0.925 31 H 0.175 0.825 32 H 0.081 0.919 33 H 0.082 0.918 34 H 0.061 0.939 35 H 0.056 0.944 36 H 0.085 0.915 37 H 0.019 0.981 38 H 0.268 0.732 39 H 0.019 0.981 40 H 0.073 0.927 41 H 0.073 0.927 42 H 0.060 0.940 43 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.925 14.499 -11.852 20.334 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.329 4.329 3 S 0.426 5.574 4 C -0.361 4.361 5 C -0.149 4.149 6 C 0.390 3.610 7 O -0.402 6.402 8 N -0.358 5.358 9 C -0.036 4.036 10 C -0.125 4.125 11 H 0.108 0.892 12 C -0.159 4.159 13 C 0.023 3.977 14 N -0.313 5.313 15 C -0.465 4.465 16 H 0.072 0.928 17 C -0.227 4.227 18 N -0.566 5.566 19 Si 0.896 3.104 20 H -0.211 1.211 21 H -0.220 1.220 22 H -0.222 1.222 23 C 0.017 3.983 24 C 0.031 3.969 25 H 0.095 0.905 26 C -0.064 4.064 27 C -0.159 4.159 28 H 0.083 0.917 29 H 0.093 0.907 30 H 0.094 0.906 31 H 0.192 0.808 32 H 0.099 0.901 33 H 0.100 0.900 34 H 0.079 0.921 35 H 0.074 0.926 36 H 0.103 0.897 37 H 0.037 0.963 38 H 0.079 0.921 39 H 0.036 0.964 40 H 0.091 0.909 41 H 0.091 0.909 42 H 0.078 0.922 43 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges -8.923 14.895 -10.362 20.220 hybrid contribution 0.800 -0.810 -1.747 2.085 sum -8.122 14.085 -12.109 20.273 Atomic orbital electron populations 1.20260 0.87633 1.02451 1.02996 1.24072 1.00154 0.95377 1.13287 1.82770 0.94286 1.08957 1.71380 1.26003 1.04595 0.97742 1.07785 1.20196 0.93848 0.92572 1.08266 1.17053 0.80147 0.87528 0.76304 1.90726 1.80637 1.18945 1.49914 1.49592 1.04285 1.09649 1.72271 1.23772 0.91533 0.88723 0.99622 1.22896 0.97768 0.94847 0.96952 0.89232 1.21931 1.01365 1.00406 0.92237 1.20885 0.93213 0.85323 0.98290 1.43549 1.52250 1.34791 1.00696 1.20025 1.01714 1.26366 0.98410 0.92835 1.25844 1.00093 0.98707 0.98018 1.70783 0.99753 1.47377 1.38696 0.83508 0.74633 0.76006 0.76276 1.21092 1.21966 1.22196 1.20245 1.00221 0.92165 0.85710 1.22416 0.80809 0.95784 0.97908 0.90533 1.19756 0.90291 0.96757 0.99638 1.20669 1.00568 0.91629 1.03081 0.91657 0.90702 0.90591 0.80800 0.90125 0.89967 0.92063 0.92580 0.89677 0.96302 0.92078 0.96376 0.90865 0.90887 0.92152 0.88739 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.68 9.47 36.00 0.34 -0.34 16 2 C -0.21 -2.64 6.44 -36.18 -0.23 -2.87 16 3 S 0.16 1.74 22.99 -107.50 -2.47 -0.73 16 4 C -0.22 -2.95 10.01 29.94 0.30 -2.65 16 5 C -0.13 -2.15 5.98 -104.63 -0.63 -2.78 16 6 C 0.60 11.68 7.92 -12.63 -0.10 11.58 16 7 O -0.52 -11.89 13.44 5.24 0.07 -11.82 16 8 N -0.62 -10.82 3.35 -175.15 -0.59 -11.40 16 9 C 0.09 1.11 6.38 -3.00 -0.02 1.09 16 10 C -0.11 -1.59 4.39 -89.96 -0.40 -1.98 16 11 H 0.09 1.12 8.14 -51.93 -0.42 0.70 16 12 C -0.12 -2.18 5.66 -26.67 -0.15 -2.33 16 13 C 0.15 3.45 4.57 -3.93 -0.02 3.44 16 14 N -0.59 -15.19 2.83 -174.89 -0.50 -15.69 16 15 C -0.34 -9.83 9.43 -15.06 -0.14 -9.97 16 16 H 0.05 1.66 7.88 -52.48 -0.41 1.24 16 17 C -0.03 -0.75 4.79 -17.43 -0.08 -0.84 16 18 N -0.92 -28.06 12.36 55.49 0.69 -27.37 16 19 Si 1.07 26.46 29.96 -169.99 -5.09 21.37 16 20 H -0.29 -7.08 7.11 56.52 0.40 -6.67 16 21 H -0.29 -7.04 7.11 56.52 0.40 -6.64 16 22 H -0.29 -7.12 7.11 56.52 0.40 -6.72 16 23 C 0.14 3.24 6.21 -5.44 -0.03 3.21 16 24 C 0.13 2.38 4.22 -69.43 -0.29 2.09 16 25 H 0.08 1.17 8.14 -51.93 -0.42 0.75 16 26 C -0.05 -0.82 6.01 -104.06 -0.63 -1.44 16 27 C -0.10 -1.50 9.34 36.01 0.34 -1.16 16 28 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 29 H 0.07 0.61 7.93 -51.93 -0.41 0.19 16 30 H 0.08 0.67 8.14 -51.93 -0.42 0.24 16 31 H 0.17 1.96 4.51 -52.49 -0.24 1.72 16 32 H 0.08 0.95 5.88 -51.93 -0.31 0.64 16 33 H 0.08 0.82 8.14 -51.93 -0.42 0.39 16 34 H 0.06 1.23 7.69 -51.93 -0.40 0.83 16 35 H 0.06 0.87 8.14 -51.93 -0.42 0.45 16 36 H 0.08 2.25 6.15 -51.93 -0.32 1.93 16 37 H 0.02 0.44 7.90 -51.93 -0.41 0.03 16 38 H 0.27 8.11 6.47 -40.82 -0.26 7.85 16 39 H 0.02 0.42 8.14 -51.93 -0.42 -0.01 16 40 H 0.07 1.85 6.44 -51.93 -0.33 1.51 16 41 H 0.07 1.13 8.14 -51.93 -0.42 0.71 16 42 H 0.06 0.71 7.38 -51.93 -0.38 0.33 16 43 H 0.09 1.63 5.91 -51.93 -0.31 1.32 16 LS Contribution 346.34 15.07 5.22 5.22 Total: -1.00 -34.16 346.34 -10.38 -44.53 By element: Atomic # 1 Polarization: 6.82 SS G_CDS: -5.96 Total: 0.86 kcal Atomic # 6 Polarization: -3.22 SS G_CDS: -1.74 Total: -4.96 kcal Atomic # 7 Polarization: -54.07 SS G_CDS: -0.40 Total: -54.46 kcal Atomic # 8 Polarization: -11.89 SS G_CDS: 0.07 Total: -11.82 kcal Atomic # 14 Polarization: 26.46 SS G_CDS: -5.09 Total: 21.37 kcal Atomic # 16 Polarization: 1.74 SS G_CDS: -2.47 Total: -0.73 kcal Total LS contribution 5.22 Total: 5.22 kcal Total: -34.16 -10.38 -44.53 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001084369967.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 102.829 kcal (2) G-P(sol) polarization free energy of solvation -34.157 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 68.672 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.375 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.533 kcal (6) G-S(sol) free energy of system = (1) + (5) 58.296 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds