Wall clock time and date at job start Tue Mar 31 2020 12:20:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50693 * 1 3 3 S 1.75509 * 124.71447 * 2 1 4 4 C 1.70442 * 92.44846 * 179.97438 * 3 2 1 5 5 C 1.36018 * 110.81645 * 359.97438 * 4 3 2 6 6 C 1.47181 * 123.45835 * 179.97438 * 5 4 3 7 7 O 1.21638 * 119.99863 * 186.25258 * 6 5 4 8 8 N 1.34776 * 120.00419 * 6.25357 * 6 5 4 9 9 C 1.47812 * 135.01002 * 355.25325 * 8 6 5 10 10 C 1.54656 * 85.79143 * 153.79037 * 9 8 6 11 11 H 1.08996 * 114.44295 * 140.42665 * 10 9 8 12 12 C 1.53019 * 110.83609 * 270.23326 * 10 9 8 13 13 C 1.53102 * 109.44813 * 143.88520 * 12 10 9 14 14 N 1.46614 * 108.00854 * 301.02783 * 13 12 10 15 15 C 1.36940 * 119.88766 * 237.30262 * 14 13 12 16 16 H 1.08004 * 120.00048 * 148.51075 * 15 14 13 17 17 C 1.38812 * 120.00090 * 328.51206 * 15 14 13 18 18 N 1.31618 * 119.99846 * 340.30645 * 17 15 14 19 19 Si 1.86797 * 119.99946 * 160.31105 * 17 15 14 20 20 H 1.48498 * 109.47059 * 179.97438 * 19 17 15 21 21 H 1.48503 * 109.47236 * 59.99974 * 19 17 15 22 22 H 1.48498 * 109.47295 * 299.99936 * 19 17 15 23 23 C 1.45674 * 120.22199 * 57.58383 * 14 13 12 24 24 C 1.46814 * 135.01487 * 175.23244 * 8 6 5 25 25 H 1.08997 * 111.57058 * 94.50200 * 24 8 6 26 26 C 1.32777 * 124.71557 * 180.29415 * 2 1 3 27 27 C 1.50705 * 123.45391 * 359.97438 * 26 2 1 28 28 H 1.08998 * 109.47381 * 0.02870 * 1 2 3 29 29 H 1.09002 * 109.47137 * 120.03020 * 1 2 3 30 30 H 1.09001 * 109.47458 * 240.02428 * 1 2 3 31 31 H 1.07997 * 124.59435 * 180.02562 * 4 3 2 32 32 H 1.08999 * 113.81748 * 39.57476 * 9 8 6 33 33 H 1.09003 * 113.93153 * 268.01816 * 9 8 6 34 34 H 1.09002 * 109.47175 * 23.89257 * 12 10 9 35 35 H 1.08995 * 109.47519 * 263.88092 * 12 10 9 36 36 H 1.08997 * 109.75109 * 181.39814 * 13 12 10 37 37 H 1.09000 * 109.79250 * 60.67793 * 13 12 10 38 38 H 0.96995 * 120.00321 * 353.84197 * 18 17 15 39 39 H 1.09000 * 108.71613 * 81.48524 * 23 14 13 40 40 H 1.08997 * 108.71683 * 199.50622 * 23 14 13 41 41 H 1.09000 * 109.46782 * 270.20773 * 27 26 2 42 42 H 1.08997 * 109.47240 * 30.21611 * 27 26 2 43 43 H 1.09005 * 109.46560 * 150.21413 * 27 26 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 16 2.5064 1.4427 0.0000 4 6 3.9476 0.5328 0.0008 5 6 3.6776 -0.8003 0.0016 6 6 4.7200 -1.8394 0.0018 7 8 4.4115 -3.0104 -0.1122 8 7 6.0165 -1.4934 0.1284 9 6 6.7554 -0.2151 0.1968 10 6 7.8227 -1.0057 0.9892 11 1 8.8520 -0.7438 0.7443 12 6 7.5257 -0.9673 2.4898 13 6 7.9060 -2.3102 3.1191 14 7 7.1265 -3.3591 2.4546 15 6 6.3153 -4.1783 3.1936 16 1 5.4075 -4.5723 2.7611 17 6 6.6598 -4.5023 4.4987 18 7 7.9046 -4.3656 4.9040 19 14 5.3569 -5.1324 5.6796 20 1 5.9768 -5.4047 7.0013 21 1 4.7665 -6.3849 5.1430 22 1 4.2917 -4.1093 5.8333 23 6 7.2166 -3.5367 1.0115 24 6 7.2801 -2.2299 0.2557 25 1 7.7639 -2.3659 -0.7115 26 6 2.2631 -1.0914 -0.0056 27 6 1.7027 -2.4904 -0.0122 28 1 -0.3634 1.0276 -0.0005 29 1 -0.3633 -0.5143 -0.8897 30 1 -0.3634 -0.5134 0.8902 31 1 4.9407 0.9572 0.0014 32 1 6.2518 0.5536 0.7829 33 1 7.1037 0.1466 -0.7706 34 1 6.4631 -0.7809 2.6452 35 1 8.1063 -0.1706 2.9548 36 1 7.6734 -2.2969 4.1839 37 1 8.9705 -2.4962 2.9769 38 1 8.5975 -4.1247 4.2695 39 1 8.1100 -4.1192 0.7860 40 1 6.3438 -4.0947 0.6726 41 1 1.5645 -2.8312 1.0139 42 1 0.7430 -2.4949 -0.5291 43 1 2.3954 -3.1567 -0.5263 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001084369967.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:20:40 Heat of formation + Delta-G solvation = 36.612473 kcal Electronic energy + Delta-G solvation = -25779.361552 eV Core-core repulsion = 22338.211855 eV Total energy + Delta-G solvation = -3441.149697 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 320.130 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -42.06210 -39.93396 -38.13658 -37.43847 -34.04648 -33.21907 -32.71980 -30.54770 -30.08417 -28.64641 -26.56915 -25.96959 -25.15367 -24.26830 -22.69175 -21.29426 -19.80511 -19.63011 -18.91540 -18.26878 -17.68313 -17.09445 -16.66467 -16.12530 -15.91003 -15.56311 -15.52039 -15.38359 -14.84663 -14.62087 -14.47868 -14.15658 -13.92165 -13.68099 -13.59222 -13.53986 -13.30095 -13.01446 -12.85323 -12.81277 -12.67985 -12.63380 -12.37932 -12.01348 -11.95452 -11.79813 -11.77501 -11.53496 -11.15880 -10.57943 -10.51629 -9.74441 -9.61369 -9.22728 -8.92211 -8.24447 -5.49415 -0.24225 0.57643 0.87980 0.93732 1.48955 1.56041 1.76509 1.80534 2.33978 2.57636 3.16241 3.31857 3.47699 3.52604 3.67638 3.86778 3.98474 4.08412 4.19108 4.25483 4.31343 4.35882 4.44012 4.51460 4.54241 4.62690 4.63639 4.66842 4.77412 4.79329 4.83843 4.94955 4.96450 4.98260 5.07004 5.10674 5.15138 5.23614 5.28109 5.52073 5.58713 5.80513 6.39421 6.76702 7.08277 7.20396 7.76857 8.13701 8.96316 Molecular weight = 320.13amu Principal moments of inertia in cm(-1) A = 0.013292 B = 0.004829 C = 0.004075 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2106.054401 B = 5797.377465 C = 6869.279327 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.078 4.078 2 C -0.211 4.211 3 S 0.242 5.758 4 C -0.221 4.221 5 C -0.171 4.171 6 C 0.585 3.415 7 O -0.582 6.582 8 N -0.632 5.632 9 C 0.101 3.899 10 C -0.097 4.097 11 H 0.133 0.867 12 C -0.108 4.108 13 C 0.151 3.849 14 N -0.606 5.606 15 C -0.347 4.347 16 H 0.021 0.979 17 C -0.068 4.068 18 N -0.939 5.939 19 Si 1.110 2.890 20 H -0.279 1.279 21 H -0.283 1.283 22 H -0.285 1.285 23 C 0.145 3.855 24 C 0.124 3.876 25 H 0.109 0.891 26 C -0.093 4.093 27 C -0.093 4.093 28 H 0.088 0.912 29 H 0.086 0.914 30 H 0.077 0.923 31 H 0.196 0.804 32 H 0.097 0.903 33 H 0.129 0.871 34 H 0.036 0.964 35 H 0.092 0.908 36 H 0.046 0.954 37 H 0.019 0.981 38 H 0.258 0.742 39 H 0.014 0.986 40 H 0.032 0.968 41 H 0.053 0.947 42 H 0.088 0.912 43 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.197 18.797 -12.835 24.192 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.328 4.328 3 S 0.510 5.490 4 C -0.358 4.358 5 C -0.189 4.189 6 C 0.376 3.624 7 O -0.464 6.464 8 N -0.366 5.366 9 C -0.019 4.019 10 C -0.116 4.116 11 H 0.151 0.849 12 C -0.147 4.147 13 C 0.026 3.974 14 N -0.330 5.330 15 C -0.478 4.478 16 H 0.039 0.961 17 C -0.264 4.264 18 N -0.582 5.582 19 Si 0.935 3.065 20 H -0.204 1.204 21 H -0.209 1.209 22 H -0.211 1.211 23 C 0.019 3.981 24 C 0.020 3.980 25 H 0.126 0.874 26 C -0.103 4.103 27 C -0.152 4.152 28 H 0.107 0.893 29 H 0.104 0.896 30 H 0.096 0.904 31 H 0.213 0.787 32 H 0.115 0.885 33 H 0.147 0.853 34 H 0.055 0.945 35 H 0.111 0.889 36 H 0.064 0.936 37 H 0.037 0.963 38 H 0.068 0.932 39 H 0.031 0.969 40 H 0.050 0.950 41 H 0.072 0.928 42 H 0.107 0.893 43 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -9.164 19.253 -11.370 24.165 hybrid contribution 0.879 -2.100 -1.470 2.710 sum -8.285 17.153 -12.840 22.973 Atomic orbital electron populations 1.20418 0.85358 1.04202 1.03662 1.24548 1.01950 0.95617 1.10715 1.82488 0.91566 1.06255 1.68689 1.26322 1.07063 0.96861 1.05576 1.20101 0.93570 0.93161 1.12082 1.17720 0.81415 0.87676 0.75621 1.90691 1.81704 1.21335 1.52630 1.49804 1.03712 1.11754 1.71354 1.24037 0.89177 0.87059 1.01673 1.22864 1.00797 0.93535 0.94392 0.84908 1.21755 1.00310 0.97895 0.94766 1.20812 0.92696 0.87523 0.96367 1.43716 1.52142 1.35358 1.01831 1.20028 1.01214 1.27223 0.99294 0.96107 1.27078 1.01165 0.98718 0.99446 1.70882 1.00075 1.48874 1.38345 0.82917 0.72786 0.76145 0.74661 1.20369 1.20930 1.21145 1.20221 0.97996 0.95268 0.84638 1.22499 0.82315 0.94167 0.99052 0.87355 1.19825 0.90587 0.97298 1.02594 1.20510 1.01129 0.91829 1.01744 0.89327 0.89556 0.90394 0.78697 0.88501 0.85326 0.94478 0.88935 0.93596 0.96254 0.93165 0.96882 0.94978 0.92834 0.89327 0.92085 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.20 9.47 71.23 0.67 -0.53 16 2 C -0.21 -4.80 6.44 24.51 0.16 -4.65 16 3 S 0.24 4.35 22.99 -56.49 -1.30 3.05 16 4 C -0.22 -5.18 10.01 67.30 0.67 -4.51 16 5 C -0.17 -5.61 5.98 -19.87 -0.12 -5.73 16 6 C 0.59 23.64 7.92 86.59 0.69 24.33 16 7 O -0.58 -28.84 13.44 -4.15 -0.06 -28.89 16 8 N -0.63 -21.48 3.35 -826.28 -2.76 -24.25 16 9 C 0.10 2.15 6.38 86.34 0.55 2.70 16 10 C -0.10 -2.58 4.39 -10.31 -0.05 -2.63 16 11 H 0.13 2.53 8.14 -2.39 -0.02 2.51 16 12 C -0.11 -3.74 5.66 30.63 0.17 -3.56 16 13 C 0.15 7.15 4.57 86.39 0.40 7.55 16 14 N -0.61 -32.81 2.83 -707.22 -2.00 -34.81 16 15 C -0.35 -21.63 9.43 84.03 0.79 -20.83 16 16 H 0.02 1.41 7.88 -2.91 -0.02 1.39 16 17 C -0.07 -4.10 4.79 84.86 0.41 -3.70 16 18 N -0.94 -58.90 12.36 21.65 0.27 -58.63 16 19 Si 1.11 55.26 29.96 68.60 2.06 57.31 16 20 H -0.28 -13.49 7.11 99.48 0.71 -12.78 16 21 H -0.28 -13.54 7.11 99.48 0.71 -12.83 16 22 H -0.28 -13.62 7.11 99.48 0.71 -12.91 16 23 C 0.15 6.91 6.21 85.91 0.53 7.45 16 24 C 0.12 4.26 4.22 43.85 0.19 4.45 16 25 H 0.11 3.07 8.14 -2.39 -0.02 3.05 16 26 C -0.09 -2.85 6.01 -19.46 -0.12 -2.97 16 27 C -0.09 -2.99 9.34 71.24 0.67 -2.33 16 28 H 0.09 0.95 8.14 -2.39 -0.02 0.93 16 29 H 0.09 1.16 7.93 -2.39 -0.02 1.15 16 30 H 0.08 1.21 8.14 -2.39 -0.02 1.19 16 31 H 0.20 3.49 4.51 -2.91 -0.01 3.48 16 32 H 0.10 1.79 5.88 -2.39 -0.01 1.77 16 33 H 0.13 1.69 8.14 -2.39 -0.02 1.67 16 34 H 0.04 1.45 7.69 -2.39 -0.02 1.44 16 35 H 0.09 2.54 8.14 -2.39 -0.02 2.52 16 36 H 0.05 2.51 6.15 -2.39 -0.01 2.49 16 37 H 0.02 0.90 7.90 -2.39 -0.02 0.89 16 38 H 0.26 16.24 6.47 -92.71 -0.60 15.64 16 39 H 0.01 0.64 8.14 -2.39 -0.02 0.62 16 40 H 0.03 1.77 6.44 -2.39 -0.02 1.75 16 41 H 0.05 1.83 8.14 -2.39 -0.02 1.81 16 42 H 0.09 2.16 7.38 -2.39 -0.02 2.14 16 43 H 0.06 2.35 5.91 -2.38 -0.01 2.34 16 Total: -1.00 -83.94 346.34 3.01 -80.93 By element: Atomic # 1 Polarization: 9.05 SS G_CDS: 1.20 Total: 10.25 kcal Atomic # 6 Polarization: -10.57 SS G_CDS: 5.61 Total: -4.96 kcal Atomic # 7 Polarization: -113.19 SS G_CDS: -4.50 Total: -117.69 kcal Atomic # 8 Polarization: -28.84 SS G_CDS: -0.06 Total: -28.89 kcal Atomic # 14 Polarization: 55.26 SS G_CDS: 2.06 Total: 57.31 kcal Atomic # 16 Polarization: 4.35 SS G_CDS: -1.30 Total: 3.05 kcal Total: -83.94 3.01 -80.93 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001084369967.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 117.542 kcal (2) G-P(sol) polarization free energy of solvation -83.939 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 33.602 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.010 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.929 kcal (6) G-S(sol) free energy of system = (1) + (5) 36.612 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds