Wall clock time and date at job start Tue Mar 31 2020 12:05:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 C 1.33809 * 124.52119 * 2 1 4 4 C 1.37481 * 115.09976 * 179.72832 * 3 2 1 5 5 C 1.36640 * 113.29298 * 0.27499 * 4 3 2 6 6 C 1.46589 * 125.45453 * 179.97438 * 5 4 3 7 7 O 1.21701 * 119.99757 * 353.57873 * 6 5 4 8 8 N 1.34776 * 119.99896 * 173.58019 * 6 5 4 9 9 C 1.47383 * 125.74301 * 5.36363 * 8 6 5 10 10 C 1.55414 * 106.74031 * 179.02628 * 9 8 6 11 11 H 1.08999 * 112.75588 * 147.11976 * 10 9 8 12 12 C 1.52903 * 106.56856 * 270.99500 * 10 9 8 13 13 C 1.51580 * 111.66267 * 169.88933 * 12 10 9 14 14 N 1.44343 * 113.01080 * 320.11786 * 13 12 10 15 15 C 1.36935 * 116.42284 * 188.02959 * 14 13 12 16 16 H 1.08007 * 119.99946 * 150.46914 * 15 14 13 17 17 C 1.38811 * 120.00263 * 330.46737 * 15 14 13 18 18 N 1.31622 * 119.99734 * 335.26405 * 17 15 14 19 19 Si 1.86798 * 120.00193 * 155.26236 * 17 15 14 20 20 H 1.48505 * 109.46991 * 60.00324 * 19 17 15 21 21 H 1.48506 * 109.47043 * 180.02562 * 19 17 15 22 22 H 1.48499 * 109.47468 * 299.99955 * 19 17 15 23 23 C 1.43977 * 127.15415 * 8.00609 * 14 13 12 24 24 C 1.49787 * 116.29782 * 2.91689 * 23 14 13 25 25 H 1.08995 * 109.26426 * 141.36066 * 24 23 14 26 26 C 1.47937 * 125.74052 * 185.05281 * 8 6 5 27 27 S 1.70619 * 124.52299 * 180.16476 * 2 1 3 28 28 H 1.08996 * 109.47571 * 89.99971 * 1 2 3 29 29 H 1.09006 * 109.46786 * 210.00126 * 1 2 3 30 30 H 1.09001 * 109.47230 * 329.99785 * 1 2 3 31 31 H 1.08003 * 122.45483 * 359.97438 * 3 2 1 32 32 H 1.07998 * 123.35160 * 180.24627 * 4 3 2 33 33 H 1.08999 * 110.00119 * 298.34821 * 9 8 6 34 34 H 1.09000 * 110.00729 * 59.70714 * 9 8 6 35 35 H 1.09004 * 109.04186 * 290.44594 * 12 10 9 36 36 H 1.08994 * 109.04504 * 49.39592 * 12 10 9 37 37 H 1.09002 * 108.77200 * 81.03137 * 13 12 10 38 38 H 1.08993 * 108.77227 * 199.32317 * 13 12 10 39 39 H 0.97003 * 120.00016 * 180.02562 * 18 17 15 40 40 H 1.09006 * 108.11582 * 124.66549 * 23 14 13 41 41 H 1.08994 * 108.11805 * 241.33723 * 23 14 13 42 42 H 1.09003 * 110.56567 * 274.18234 * 26 8 6 43 43 H 1.09001 * 110.56850 * 37.03549 * 26 8 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2653 1.1025 0.0000 4 6 3.6216 0.8774 0.0059 5 6 3.9492 -0.4491 0.0047 6 6 5.3123 -0.9883 0.0095 7 8 6.2639 -0.2380 -0.1029 8 7 5.5117 -2.3150 0.1383 9 6 4.4579 -3.3449 0.1706 10 6 5.1763 -4.7163 0.3070 11 1 4.5996 -5.4387 0.8846 12 6 5.4645 -5.2007 -1.1144 13 6 6.3798 -6.4090 -1.1188 14 7 7.4366 -6.3199 -0.1396 15 6 8.4024 -7.2891 -0.1956 16 1 9.4093 -7.0673 0.1263 17 6 8.0874 -8.5565 -0.6658 18 7 6.8478 -8.9939 -0.5993 19 14 9.4228 -9.6415 -1.3931 20 1 10.4713 -9.8885 -0.3708 21 1 8.8318 -10.9355 -1.8193 22 1 10.0269 -8.9630 -2.5678 23 6 7.5872 -5.3240 0.8891 24 6 6.4945 -4.3045 0.9908 25 1 6.3008 -4.0885 2.0414 26 6 6.8256 -2.9831 0.2645 27 16 2.4740 -1.4057 -0.0040 28 1 -0.3634 0.0000 -1.0276 29 1 -0.3633 -0.8900 0.5139 30 1 -0.3634 0.8900 0.5139 31 1 1.8429 2.0965 -0.0004 32 1 4.3550 1.6702 0.0105 33 1 3.8022 -3.1807 1.0257 34 1 3.8804 -3.3167 -0.7534 35 1 4.5239 -5.4654 -1.5975 36 1 5.9379 -4.3952 -1.6755 37 1 5.7859 -7.2997 -0.9141 38 1 6.8275 -6.5062 -2.1078 39 1 6.6277 -9.8797 -0.9275 40 1 7.6626 -5.8362 1.8483 41 1 8.5246 -4.7958 0.7149 42 1 7.2508 -3.1806 -0.7196 43 1 7.5069 -2.3782 0.8627 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001087868347.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:05:24 Heat of formation + Delta-G solvation = 24.988616 kcal Electronic energy + Delta-G solvation = -24879.596265 eV Core-core repulsion = 21437.942519 eV Total energy + Delta-G solvation = -3441.653745 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 320.130 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -40.39309 -38.76742 -37.61449 -35.66517 -32.80774 -32.18882 -31.52965 -30.40347 -28.13137 -27.53315 -25.43104 -23.94542 -23.31021 -22.24462 -21.67770 -20.80100 -18.64973 -18.22993 -17.48112 -17.03245 -15.98366 -15.87291 -15.77756 -15.05424 -14.66328 -14.41909 -14.12390 -14.00275 -13.76892 -13.40080 -13.21635 -13.09652 -12.89935 -12.57562 -12.46584 -12.40203 -12.23856 -12.06106 -11.90070 -11.24209 -11.14993 -10.92910 -10.76015 -10.49917 -10.27526 -10.24064 -10.11795 -9.78786 -9.68963 -9.58804 -8.94206 -8.78284 -8.48474 -8.47656 -6.59398 -5.65015 -3.30280 0.35453 1.30036 1.73423 2.21872 2.93104 3.16990 3.38870 3.44634 3.47862 4.40560 4.49685 4.52658 4.65845 4.88436 4.91781 5.03128 5.11427 5.15105 5.24250 5.34308 5.34448 5.44084 5.53676 5.57266 5.62332 5.77153 5.80373 5.90817 5.94839 5.98322 6.08848 6.17817 6.20368 6.40954 6.48119 6.50915 6.62095 6.79907 6.87469 7.26414 7.48680 7.79459 7.89272 8.09736 8.53157 9.28073 9.97122 10.28322 11.21897 Molecular weight = 320.13amu Principal moments of inertia in cm(-1) A = 0.028905 B = 0.003021 C = 0.002825 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 968.468294 B = 9265.036141 C = 9908.533199 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.085 4.085 2 C -0.217 4.217 3 C -0.158 4.158 4 C -0.056 4.056 5 C -0.263 4.263 6 C 0.602 3.398 7 O -0.536 6.536 8 N -0.613 5.613 9 C 0.087 3.913 10 C -0.073 4.073 11 H 0.103 0.897 12 C -0.124 4.124 13 C 0.156 3.844 14 N -0.585 5.585 15 C -0.271 4.271 16 H 0.064 0.936 17 C 0.009 3.991 18 N -0.888 5.888 19 Si 0.898 3.102 20 H -0.282 1.282 21 H -0.291 1.291 22 H -0.284 1.284 23 C 0.176 3.824 24 C -0.098 4.098 25 H 0.075 0.925 26 C 0.118 3.882 27 S 0.222 5.778 28 H 0.076 0.924 29 H 0.070 0.930 30 H 0.076 0.924 31 H 0.140 0.860 32 H 0.151 0.849 33 H 0.071 0.929 34 H 0.074 0.926 35 H 0.059 0.941 36 H 0.049 0.951 37 H 0.078 0.922 38 H 0.019 0.981 39 H 0.253 0.747 40 H 0.026 0.974 41 H 0.016 0.984 42 H 0.077 0.923 43 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.028 15.884 2.012 21.287 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.336 4.336 3 C -0.188 4.188 4 C -0.089 4.089 5 C -0.384 4.384 6 C 0.390 3.610 7 O -0.416 6.416 8 N -0.346 5.346 9 C -0.037 4.037 10 C -0.092 4.092 11 H 0.121 0.879 12 C -0.162 4.162 13 C 0.032 3.968 14 N -0.309 5.309 15 C -0.400 4.400 16 H 0.082 0.918 17 C -0.191 4.191 18 N -0.531 5.531 19 Si 0.728 3.272 20 H -0.208 1.208 21 H -0.217 1.217 22 H -0.211 1.211 23 C 0.050 3.950 24 C -0.118 4.118 25 H 0.093 0.907 26 C -0.004 4.004 27 S 0.490 5.510 28 H 0.095 0.905 29 H 0.089 0.911 30 H 0.095 0.905 31 H 0.158 0.842 32 H 0.169 0.831 33 H 0.089 0.911 34 H 0.092 0.908 35 H 0.078 0.922 36 H 0.068 0.932 37 H 0.096 0.904 38 H 0.037 0.963 39 H 0.064 0.936 40 H 0.044 0.956 41 H 0.033 0.967 42 H 0.095 0.905 43 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges -13.997 14.724 1.895 20.404 hybrid contribution 0.814 1.056 -0.458 1.410 sum -13.183 15.780 1.437 20.612 Atomic orbital electron populations 1.20374 0.87631 1.03341 1.02966 1.24614 1.01867 0.99449 1.07659 1.19915 0.92572 0.99485 1.06824 1.20701 0.96176 0.95096 0.96964 1.24558 0.96804 0.98015 1.18974 1.16563 0.86851 0.80682 0.76876 1.90822 1.42221 1.57419 1.51103 1.48552 1.09509 1.04746 1.71762 1.22691 0.90500 0.89039 1.01517 1.22025 0.95385 0.93311 0.98505 0.87911 1.21699 1.00238 0.99905 0.94393 1.20201 0.89869 0.95772 0.91002 1.42638 1.28260 1.28400 1.31646 1.19066 0.89802 0.89928 1.41245 0.91818 1.24999 0.96085 0.96221 1.01824 1.69998 1.18093 1.17524 1.47500 0.86436 0.81662 0.79433 0.79689 1.20785 1.21694 1.21068 1.19260 0.93813 0.89363 0.92576 1.21680 0.96442 0.94440 0.99209 0.90676 1.22483 0.84074 0.92468 1.01337 1.83503 0.93664 1.06139 1.67677 0.90494 0.91097 0.90534 0.84228 0.83142 0.91095 0.90777 0.92229 0.93221 0.90444 0.96308 0.93636 0.95614 0.96664 0.90494 0.90347 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.52 10.31 36.01 0.37 -0.15 16 2 C -0.22 -1.98 6.28 -35.86 -0.23 -2.20 16 3 C -0.16 -1.51 9.99 -41.41 -0.41 -1.92 16 4 C -0.06 -0.66 10.02 -40.43 -0.41 -1.06 16 5 C -0.26 -3.47 6.38 -36.79 -0.23 -3.71 16 6 C 0.60 9.66 7.81 -12.89 -0.10 9.56 16 7 O -0.54 -10.24 17.17 5.19 0.09 -10.15 16 8 N -0.61 -9.28 3.34 -171.03 -0.57 -9.85 16 9 C 0.09 1.13 4.53 -2.28 -0.01 1.12 16 10 C -0.07 -1.13 3.65 -88.81 -0.32 -1.45 16 11 H 0.10 1.57 8.14 -51.93 -0.42 1.15 16 12 C -0.12 -2.18 4.78 -27.50 -0.13 -2.31 16 13 C 0.16 3.57 5.18 -5.91 -0.03 3.54 16 14 N -0.58 -14.17 3.22 -179.70 -0.58 -14.75 16 15 C -0.27 -7.32 9.23 -15.06 -0.14 -7.46 16 16 H 0.06 1.72 7.94 -52.48 -0.42 1.30 16 17 C 0.01 0.24 4.94 -17.43 -0.09 0.16 16 18 N -0.89 -24.94 11.04 55.49 0.61 -24.32 16 19 Si 0.90 21.43 29.62 -169.99 -5.04 16.40 16 20 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 21 H -0.29 -6.96 7.11 56.52 0.40 -6.56 16 22 H -0.28 -6.79 7.11 56.52 0.40 -6.39 16 23 C 0.18 3.58 5.75 -6.97 -0.04 3.54 16 24 C -0.10 -1.61 2.84 -90.91 -0.26 -1.86 16 25 H 0.07 1.12 8.14 -51.93 -0.42 0.70 16 26 C 0.12 1.89 5.66 -2.53 -0.01 1.88 16 27 S 0.22 2.27 18.44 -107.50 -1.98 0.29 16 28 H 0.08 0.41 8.14 -51.93 -0.42 -0.01 16 29 H 0.07 0.39 8.14 -51.93 -0.42 -0.04 16 30 H 0.08 0.38 8.14 -51.93 -0.42 -0.04 16 31 H 0.14 1.02 8.06 -52.48 -0.42 0.59 16 32 H 0.15 1.69 8.06 -52.49 -0.42 1.26 16 33 H 0.07 0.81 6.85 -51.93 -0.36 0.46 16 34 H 0.07 0.91 6.68 -51.93 -0.35 0.56 16 35 H 0.06 0.93 8.14 -51.93 -0.42 0.51 16 36 H 0.05 0.87 6.60 -51.93 -0.34 0.53 16 37 H 0.08 2.00 5.82 -51.93 -0.30 1.70 16 38 H 0.02 0.47 8.12 -51.93 -0.42 0.04 16 39 H 0.25 6.90 8.31 -40.82 -0.34 6.56 16 40 H 0.03 0.55 8.14 -51.93 -0.42 0.13 16 41 H 0.02 0.32 7.80 -51.93 -0.40 -0.09 16 42 H 0.08 1.35 7.16 -51.93 -0.37 0.97 16 43 H 0.08 1.25 8.10 -51.93 -0.42 0.83 16 LS Contribution 347.98 15.07 5.24 5.24 Total: -1.00 -30.96 347.98 -10.59 -41.54 By element: Atomic # 1 Polarization: 4.25 SS G_CDS: -6.32 Total: -2.08 kcal Atomic # 6 Polarization: -0.28 SS G_CDS: -2.04 Total: -2.32 kcal Atomic # 7 Polarization: -48.38 SS G_CDS: -0.54 Total: -48.92 kcal Atomic # 8 Polarization: -10.24 SS G_CDS: 0.09 Total: -10.15 kcal Atomic # 14 Polarization: 21.43 SS G_CDS: -5.04 Total: 16.40 kcal Atomic # 16 Polarization: 2.27 SS G_CDS: -1.98 Total: 0.29 kcal Total LS contribution 5.24 Total: 5.24 kcal Total: -30.96 -10.59 -41.54 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001087868347.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 66.531 kcal (2) G-P(sol) polarization free energy of solvation -30.955 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 35.575 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.587 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.542 kcal (6) G-S(sol) free energy of system = (1) + (5) 24.989 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds