Wall clock time and date at job start Tue Mar 31 2020 12:05:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 C 1.33809 * 124.52119 * 2 1 4 4 C 1.37481 * 115.09976 * 179.72832 * 3 2 1 5 5 C 1.36640 * 113.29298 * 0.27499 * 4 3 2 6 6 C 1.46589 * 125.45453 * 179.97438 * 5 4 3 7 7 O 1.21701 * 119.99757 * 353.57873 * 6 5 4 8 8 N 1.34776 * 119.99896 * 173.58019 * 6 5 4 9 9 C 1.47383 * 125.74301 * 5.36363 * 8 6 5 10 10 C 1.55414 * 106.74031 * 179.02628 * 9 8 6 11 11 H 1.08999 * 112.75588 * 147.11976 * 10 9 8 12 12 C 1.52903 * 106.56856 * 270.99500 * 10 9 8 13 13 C 1.51580 * 111.66267 * 169.88933 * 12 10 9 14 14 N 1.44343 * 113.01080 * 320.11786 * 13 12 10 15 15 C 1.36935 * 116.42284 * 188.02959 * 14 13 12 16 16 H 1.08007 * 119.99946 * 150.46914 * 15 14 13 17 17 C 1.38811 * 120.00263 * 330.46737 * 15 14 13 18 18 N 1.31622 * 119.99734 * 335.26405 * 17 15 14 19 19 Si 1.86798 * 120.00193 * 155.26236 * 17 15 14 20 20 H 1.48505 * 109.46991 * 60.00324 * 19 17 15 21 21 H 1.48506 * 109.47043 * 180.02562 * 19 17 15 22 22 H 1.48499 * 109.47468 * 299.99955 * 19 17 15 23 23 C 1.43977 * 127.15415 * 8.00609 * 14 13 12 24 24 C 1.49787 * 116.29782 * 2.91689 * 23 14 13 25 25 H 1.08995 * 109.26426 * 141.36066 * 24 23 14 26 26 C 1.47937 * 125.74052 * 185.05281 * 8 6 5 27 27 S 1.70619 * 124.52299 * 180.16476 * 2 1 3 28 28 H 1.08996 * 109.47571 * 89.99971 * 1 2 3 29 29 H 1.09006 * 109.46786 * 210.00126 * 1 2 3 30 30 H 1.09001 * 109.47230 * 329.99785 * 1 2 3 31 31 H 1.08003 * 122.45483 * 359.97438 * 3 2 1 32 32 H 1.07998 * 123.35160 * 180.24627 * 4 3 2 33 33 H 1.08999 * 110.00119 * 298.34821 * 9 8 6 34 34 H 1.09000 * 110.00729 * 59.70714 * 9 8 6 35 35 H 1.09004 * 109.04186 * 290.44594 * 12 10 9 36 36 H 1.08994 * 109.04504 * 49.39592 * 12 10 9 37 37 H 1.09002 * 108.77200 * 81.03137 * 13 12 10 38 38 H 1.08993 * 108.77227 * 199.32317 * 13 12 10 39 39 H 0.97003 * 120.00016 * 180.02562 * 18 17 15 40 40 H 1.09006 * 108.11582 * 124.66549 * 23 14 13 41 41 H 1.08994 * 108.11805 * 241.33723 * 23 14 13 42 42 H 1.09003 * 110.56567 * 274.18234 * 26 8 6 43 43 H 1.09001 * 110.56850 * 37.03549 * 26 8 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2653 1.1025 0.0000 4 6 3.6216 0.8774 0.0059 5 6 3.9492 -0.4491 0.0047 6 6 5.3123 -0.9883 0.0095 7 8 6.2639 -0.2380 -0.1029 8 7 5.5117 -2.3150 0.1383 9 6 4.4579 -3.3449 0.1706 10 6 5.1763 -4.7163 0.3070 11 1 4.5996 -5.4387 0.8846 12 6 5.4645 -5.2007 -1.1144 13 6 6.3798 -6.4090 -1.1188 14 7 7.4366 -6.3199 -0.1396 15 6 8.4024 -7.2891 -0.1956 16 1 9.4093 -7.0673 0.1263 17 6 8.0874 -8.5565 -0.6658 18 7 6.8478 -8.9939 -0.5993 19 14 9.4228 -9.6415 -1.3931 20 1 10.4713 -9.8885 -0.3708 21 1 8.8318 -10.9355 -1.8193 22 1 10.0269 -8.9630 -2.5678 23 6 7.5872 -5.3240 0.8891 24 6 6.4945 -4.3045 0.9908 25 1 6.3008 -4.0885 2.0414 26 6 6.8256 -2.9831 0.2645 27 16 2.4740 -1.4057 -0.0040 28 1 -0.3634 0.0000 -1.0276 29 1 -0.3633 -0.8900 0.5139 30 1 -0.3634 0.8900 0.5139 31 1 1.8429 2.0965 -0.0004 32 1 4.3550 1.6702 0.0105 33 1 3.8022 -3.1807 1.0257 34 1 3.8804 -3.3167 -0.7534 35 1 4.5239 -5.4654 -1.5975 36 1 5.9379 -4.3952 -1.6755 37 1 5.7859 -7.2997 -0.9141 38 1 6.8275 -6.5062 -2.1078 39 1 6.6277 -9.8797 -0.9275 40 1 7.6626 -5.8362 1.8483 41 1 8.5246 -4.7958 0.7149 42 1 7.2508 -3.1806 -0.7196 43 1 7.5069 -2.3782 0.8627 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001087868347.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:05:23 Heat of formation + Delta-G solvation = 7.422551 kcal Electronic energy + Delta-G solvation = -24880.357987 eV Core-core repulsion = 21437.942519 eV Total energy + Delta-G solvation = -3442.415467 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 320.130 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -41.67240 -39.96415 -38.60169 -37.30124 -34.38152 -33.16954 -32.97844 -32.04552 -29.44111 -28.63331 -26.87369 -25.36750 -24.34876 -23.64723 -23.22471 -21.84705 -19.77443 -19.32650 -19.11475 -18.49388 -17.24618 -16.98496 -16.93711 -16.73244 -16.03344 -15.71859 -15.43532 -15.34228 -14.93786 -14.71752 -14.59599 -14.26623 -13.95963 -13.87382 -13.66480 -13.50322 -13.29212 -13.00317 -12.96363 -12.82107 -12.70465 -12.55536 -12.31794 -12.07701 -11.84887 -11.79238 -11.51823 -11.30698 -11.18757 -11.16504 -10.51974 -10.00076 -9.57361 -9.44747 -8.62534 -7.69746 -5.40622 -0.50980 0.48100 0.94346 1.35631 1.46249 1.49443 1.55948 1.76757 2.09751 2.51675 3.20616 3.29077 3.41546 3.66917 3.74571 3.79704 3.90558 4.08957 4.23609 4.28725 4.38908 4.41367 4.43158 4.57010 4.59574 4.67162 4.69814 4.75973 4.83817 4.92690 5.00301 5.04619 5.10397 5.11428 5.14046 5.22126 5.27400 5.28916 5.41527 5.44225 5.70033 5.94239 6.31545 6.45907 6.90491 7.22993 8.05460 8.24814 9.11976 Molecular weight = 320.13amu Principal moments of inertia in cm(-1) A = 0.028905 B = 0.003021 C = 0.002825 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 968.468294 B = 9265.036141 C = 9908.533199 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.088 4.088 2 C -0.202 4.202 3 C -0.168 4.168 4 C -0.053 4.053 5 C -0.305 4.305 6 C 0.599 3.401 7 O -0.580 6.580 8 N -0.613 5.613 9 C 0.096 3.904 10 C -0.070 4.070 11 H 0.112 0.888 12 C -0.114 4.114 13 C 0.163 3.837 14 N -0.597 5.597 15 C -0.290 4.290 16 H 0.057 0.943 17 C -0.036 4.036 18 N -0.910 5.910 19 Si 0.957 3.043 20 H -0.275 1.275 21 H -0.289 1.289 22 H -0.285 1.285 23 C 0.176 3.824 24 C -0.092 4.092 25 H 0.097 0.903 26 C 0.124 3.876 27 S 0.246 5.754 28 H 0.089 0.911 29 H 0.081 0.919 30 H 0.092 0.908 31 H 0.165 0.835 32 H 0.146 0.854 33 H 0.096 0.904 34 H 0.089 0.911 35 H 0.083 0.917 36 H 0.047 0.953 37 H 0.051 0.949 38 H -0.012 1.012 39 H 0.252 0.748 40 H 0.016 0.984 41 H 0.012 0.988 42 H 0.058 0.942 43 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.702 16.999 2.370 23.949 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.321 4.321 3 C -0.197 4.197 4 C -0.087 4.087 5 C -0.425 4.425 6 C 0.390 3.610 7 O -0.463 6.463 8 N -0.345 5.345 9 C -0.027 4.027 10 C -0.089 4.089 11 H 0.130 0.870 12 C -0.152 4.152 13 C 0.038 3.962 14 N -0.321 5.321 15 C -0.421 4.421 16 H 0.075 0.925 17 C -0.234 4.234 18 N -0.555 5.555 19 Si 0.785 3.215 20 H -0.201 1.201 21 H -0.215 1.215 22 H -0.211 1.211 23 C 0.050 3.950 24 C -0.112 4.112 25 H 0.115 0.885 26 C 0.002 3.998 27 S 0.515 5.485 28 H 0.108 0.892 29 H 0.100 0.900 30 H 0.111 0.889 31 H 0.182 0.818 32 H 0.164 0.836 33 H 0.114 0.886 34 H 0.107 0.893 35 H 0.102 0.898 36 H 0.066 0.934 37 H 0.068 0.932 38 H 0.006 0.994 39 H 0.061 0.939 40 H 0.034 0.966 41 H 0.030 0.970 42 H 0.076 0.924 43 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges -16.683 15.833 2.266 23.112 hybrid contribution 1.601 0.755 -0.568 1.859 sum -15.083 16.588 1.697 22.484 Atomic orbital electron populations 1.20550 0.85188 1.04719 1.04173 1.25061 1.03406 0.98614 1.05054 1.20108 0.91510 1.00969 1.07132 1.20906 0.97365 0.94639 0.95807 1.24373 0.96536 0.99186 1.22386 1.16984 0.87744 0.80414 0.75882 1.90783 1.43941 1.58346 1.53237 1.48563 1.09400 1.05022 1.71551 1.22693 0.89909 0.86648 1.03446 1.21996 0.95196 0.94873 0.96838 0.87034 1.21575 0.99904 0.97372 0.96355 1.20004 0.89746 0.97381 0.89083 1.42874 1.28010 1.28427 1.32786 1.19334 0.90407 0.90862 1.41453 0.92504 1.25665 0.97995 0.97428 1.02265 1.70127 1.19487 1.17696 1.48157 0.85515 0.79457 0.77730 0.78826 1.20061 1.21517 1.21139 1.19289 0.95447 0.89351 0.90897 1.21537 0.95672 0.93214 1.00746 0.88463 1.22265 0.84918 0.92440 1.00216 1.83241 0.91915 1.06116 1.67234 0.89211 0.90047 0.88890 0.81797 0.83626 0.88575 0.89338 0.89831 0.93425 0.93166 0.99403 0.93880 0.96633 0.97006 0.92388 0.90498 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -0.70 10.31 71.24 0.73 0.04 16 2 C -0.20 -2.94 6.28 24.68 0.15 -2.78 16 3 C -0.17 -2.72 9.99 21.08 0.21 -2.51 16 4 C -0.05 -1.16 10.02 21.72 0.22 -0.94 16 5 C -0.31 -7.62 6.38 24.08 0.15 -7.46 16 6 C 0.60 19.00 7.81 86.42 0.67 19.68 16 7 O -0.58 -22.64 17.17 -4.35 -0.07 -22.72 16 8 N -0.61 -17.94 3.34 -813.23 -2.72 -20.66 16 9 C 0.10 2.27 4.53 87.04 0.39 2.66 16 10 C -0.07 -2.04 3.65 -9.62 -0.04 -2.07 16 11 H 0.11 3.14 8.14 -2.39 -0.02 3.12 16 12 C -0.11 -3.91 4.78 30.10 0.14 -3.77 16 13 C 0.16 7.62 5.18 86.32 0.45 8.07 16 14 N -0.60 -29.62 3.22 -722.43 -2.32 -31.94 16 15 C -0.29 -16.10 9.23 84.03 0.78 -15.32 16 16 H 0.06 3.15 7.94 -2.91 -0.02 3.13 16 17 C -0.04 -1.97 4.94 84.86 0.42 -1.55 16 18 N -0.91 -52.14 11.04 21.65 0.24 -51.90 16 19 Si 0.96 44.74 29.62 68.60 2.03 46.77 16 20 H -0.27 -12.47 7.11 99.48 0.71 -11.76 16 21 H -0.29 -13.36 7.11 99.48 0.71 -12.65 16 22 H -0.28 -13.26 7.11 99.48 0.71 -12.55 16 23 C 0.18 7.26 5.75 85.82 0.49 7.75 16 24 C -0.09 -2.95 2.84 -10.98 -0.03 -2.98 16 25 H 0.10 2.72 8.14 -2.39 -0.02 2.71 16 26 C 0.12 3.97 5.66 86.57 0.49 4.46 16 27 S 0.25 4.28 18.44 -56.49 -1.04 3.24 16 28 H 0.09 0.56 8.14 -2.39 -0.02 0.54 16 29 H 0.08 0.52 8.14 -2.38 -0.02 0.50 16 30 H 0.09 0.50 8.14 -2.39 -0.02 0.48 16 31 H 0.16 1.80 8.06 -2.91 -0.02 1.77 16 32 H 0.15 3.23 8.06 -2.91 -0.02 3.20 16 33 H 0.10 1.86 6.85 -2.39 -0.02 1.84 16 34 H 0.09 1.89 6.68 -2.39 -0.02 1.87 16 35 H 0.08 2.46 8.14 -2.39 -0.02 2.44 16 36 H 0.05 1.65 6.60 -2.39 -0.02 1.64 16 37 H 0.05 2.67 5.82 -2.39 -0.01 2.66 16 38 H -0.01 -0.63 8.12 -2.39 -0.02 -0.65 16 39 H 0.25 13.92 8.31 -92.71 -0.77 13.15 16 40 H 0.02 0.68 8.14 -2.38 -0.02 0.66 16 41 H 0.01 0.51 7.80 -2.39 -0.02 0.49 16 42 H 0.06 2.07 7.16 -2.39 -0.02 2.06 16 43 H 0.08 2.47 8.10 -2.39 -0.02 2.45 16 Total: -1.00 -69.22 347.98 2.36 -66.85 By element: Atomic # 1 Polarization: 6.08 SS G_CDS: 1.01 Total: 7.09 kcal Atomic # 6 Polarization: -1.98 SS G_CDS: 5.24 Total: 3.26 kcal Atomic # 7 Polarization: -99.70 SS G_CDS: -4.80 Total: -104.50 kcal Atomic # 8 Polarization: -22.64 SS G_CDS: -0.07 Total: -22.72 kcal Atomic # 14 Polarization: 44.74 SS G_CDS: 2.03 Total: 46.77 kcal Atomic # 16 Polarization: 4.28 SS G_CDS: -1.04 Total: 3.24 kcal Total: -69.22 2.36 -66.85 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001087868347.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 74.277 kcal (2) G-P(sol) polarization free energy of solvation -69.219 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 5.058 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.365 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.855 kcal (6) G-S(sol) free energy of system = (1) + (5) 7.423 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds