Wall clock time and date at job start Tue Mar 31 2020 12:20:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50694 * 1 3 3 C 1.32775 * 123.45801 * 2 1 4 4 S 1.75500 * 110.57748 * 180.24826 * 3 2 1 5 5 C 1.70449 * 92.44301 * 359.74220 * 4 3 2 6 6 C 1.36006 * 110.81921 * 359.97438 * 5 4 3 7 7 C 1.47186 * 123.46440 * 179.97438 * 6 5 4 8 8 O 1.21633 * 120.00509 * 173.81401 * 7 6 5 9 9 N 1.34785 * 119.99517 * 353.80665 * 7 6 5 10 10 C 1.47641 * 125.72802 * 184.59527 * 9 7 6 11 11 C 1.55913 * 104.41795 * 155.01464 * 10 9 7 12 12 H 1.09003 * 113.53982 * 159.13736 * 11 10 9 13 13 C 1.53067 * 106.17251 * 283.25354 * 11 10 9 14 14 C 1.52780 * 110.77451 * 163.38315 * 13 11 10 15 15 N 1.47199 * 107.81249 * 302.30062 * 14 13 11 16 16 C 1.36934 * 121.32230 * 237.93416 * 15 14 13 17 17 H 1.07992 * 120.00289 * 29.85873 * 16 15 14 18 18 C 1.38817 * 119.99790 * 209.84829 * 16 15 14 19 19 N 1.31620 * 119.99542 * 15.68222 * 18 16 15 20 20 Si 1.86794 * 120.00206 * 195.67570 * 18 16 15 21 21 H 1.48496 * 109.47185 * 90.00050 * 20 18 16 22 22 H 1.48496 * 109.47199 * 210.00730 * 20 18 16 23 23 H 1.48509 * 109.47128 * 330.00485 * 20 18 16 24 24 C 1.46723 * 117.34880 * 57.95716 * 15 14 13 25 25 C 1.50979 * 111.06262 * 307.68471 * 24 15 14 26 26 H 1.08996 * 108.99129 * 167.68207 * 25 24 15 27 27 C 1.47265 * 125.74236 * 4.62304 * 9 7 6 28 28 H 1.09003 * 109.47071 * 270.21000 * 1 2 3 29 29 H 1.09000 * 109.47527 * 30.21049 * 1 2 3 30 30 H 1.08995 * 109.47297 * 150.21437 * 1 2 3 31 31 H 1.08003 * 124.71342 * 359.97438 * 3 2 1 32 32 H 1.08006 * 124.59048 * 179.97438 * 5 4 3 33 33 H 1.08998 * 110.44812 * 36.27899 * 10 9 7 34 34 H 1.09003 * 110.44083 * 273.74364 * 10 9 7 35 35 H 1.09009 * 109.21099 * 43.06672 * 13 11 10 36 36 H 1.09001 * 109.21071 * 283.71226 * 13 11 10 37 37 H 1.09007 * 109.78977 * 61.88166 * 14 13 11 38 38 H 1.09001 * 109.79375 * 182.66335 * 14 13 11 39 39 H 0.97005 * 119.99465 * 179.97438 * 19 18 16 40 40 H 1.08999 * 109.15838 * 68.08999 * 24 15 14 41 41 H 1.09003 * 109.15909 * 187.32988 * 24 15 14 42 42 H 1.09003 * 110.04975 * 61.30558 * 27 9 7 43 43 H 1.09005 * 110.06017 * 299.80953 * 27 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.2390 1.1077 0.0000 4 16 3.9498 0.7165 -0.0071 5 6 3.6410 -0.9598 -0.0023 6 6 2.3032 -1.2049 0.0049 7 6 1.7262 -2.5589 0.0099 8 8 0.5250 -2.7077 0.1298 9 7 2.5290 -3.6339 -0.1186 10 6 2.0809 -5.0366 -0.2258 11 6 3.2404 -5.7582 -0.9780 12 1 3.2491 -6.8382 -0.8310 13 6 3.1000 -5.3688 -2.4517 14 6 4.3883 -5.6682 -3.2164 15 7 5.4814 -4.9290 -2.5639 16 6 6.2406 -4.0234 -3.2556 17 1 5.8106 -3.4782 -4.0827 18 6 7.5629 -3.8060 -2.8936 19 7 8.1802 -4.6645 -2.1098 20 14 8.4663 -2.2953 -3.5188 21 1 8.2799 -1.1756 -2.5614 22 1 9.9137 -2.6017 -3.6467 23 1 7.9233 -1.9076 -4.8456 24 6 5.7253 -5.2017 -1.1430 25 6 4.4557 -5.0620 -0.3379 26 1 4.6184 -5.4784 0.6561 27 6 4.0003 -3.6070 -0.1751 28 1 -0.3633 0.0038 1.0277 29 1 -0.3634 0.8881 -0.5171 30 1 -0.3633 -0.8918 -0.5105 31 1 1.8374 2.1103 -0.0004 32 1 4.4044 -1.7239 -0.0047 33 1 1.1573 -5.0984 -0.8013 34 1 1.9429 -5.4690 0.7652 35 1 2.8807 -4.3033 -2.5218 36 1 2.2800 -5.9336 -2.8953 37 1 4.5959 -6.7378 -3.1853 38 1 4.2875 -5.3419 -4.2515 39 1 9.1044 -4.5128 -1.8571 40 1 6.1081 -6.2164 -1.0340 41 1 6.4666 -4.4972 -0.7656 42 1 4.4022 -3.1907 0.7487 43 1 4.3310 -3.0141 -1.0279 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001087924748.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:20:37 Heat of formation + Delta-G solvation = 32.633578 kcal Electronic energy + Delta-G solvation = -25900.143155 eV Core-core repulsion = 22458.820921 eV Total energy + Delta-G solvation = -3441.322235 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 320.130 amu Computer time = 1.22 seconds Orbital eigenvalues (eV) -40.45277 -38.58346 -36.85156 -35.30134 -32.91573 -31.40548 -30.91762 -30.09352 -27.92170 -27.05962 -26.02719 -24.44817 -23.10445 -21.61175 -21.45076 -20.21177 -18.65391 -18.51200 -17.28213 -16.82535 -16.29126 -15.82309 -15.07113 -14.84600 -14.24608 -14.20123 -13.86292 -13.67119 -13.47923 -13.27328 -13.10669 -12.78813 -12.55846 -12.46574 -12.11864 -12.02511 -11.93453 -11.82231 -11.54479 -11.20317 -11.02616 -10.82123 -10.80244 -10.61496 -10.50239 -10.25287 -9.99989 -9.59365 -9.51308 -9.44605 -8.83388 -8.57504 -8.47427 -8.18177 -6.72350 -5.87982 -3.32077 0.88511 1.63886 2.00896 2.06414 3.19903 3.30555 3.39342 3.40081 3.51769 4.41658 4.67494 4.79314 4.96116 5.05857 5.18121 5.21887 5.31339 5.40422 5.45138 5.54812 5.57256 5.70429 5.77212 5.78948 5.83753 5.89820 5.98746 6.03401 6.04166 6.24364 6.29175 6.36344 6.42558 6.51197 6.55604 6.62222 6.66366 6.79540 6.96595 7.16770 7.47920 7.72668 7.75122 8.36205 8.37908 9.12888 9.74658 10.36016 11.20762 Molecular weight = 320.13amu Principal moments of inertia in cm(-1) A = 0.011635 B = 0.005702 C = 0.004186 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2406.017170 B = 4909.348271 C = 6688.088177 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.095 4.095 2 C -0.051 4.051 3 C -0.253 4.253 4 S 0.176 5.824 5 C -0.215 4.215 6 C -0.156 4.156 7 C 0.592 3.408 8 O -0.548 6.548 9 N -0.605 5.605 10 C 0.110 3.890 11 C -0.087 4.087 12 H 0.093 0.907 13 C -0.128 4.128 14 C 0.142 3.858 15 N -0.587 5.587 16 C -0.251 4.251 17 H 0.065 0.935 18 C 0.007 3.993 19 N -0.901 5.901 20 Si 0.897 3.103 21 H -0.286 1.286 22 H -0.290 1.290 23 H -0.278 1.278 24 C 0.179 3.821 25 C -0.114 4.114 26 H 0.065 0.935 27 C 0.101 3.899 28 H 0.069 0.931 29 H 0.059 0.941 30 H 0.088 0.912 31 H 0.165 0.835 32 H 0.194 0.806 33 H 0.075 0.925 34 H 0.061 0.939 35 H 0.060 0.940 36 H 0.049 0.951 37 H 0.021 0.979 38 H 0.054 0.946 39 H 0.254 0.746 40 H 0.026 0.974 41 H 0.086 0.914 42 H 0.063 0.937 43 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.839 5.802 5.966 12.887 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.062 4.062 3 C -0.387 4.387 4 S 0.443 5.557 5 C -0.352 4.352 6 C -0.173 4.173 7 C 0.381 3.619 8 O -0.428 6.428 9 N -0.337 5.337 10 C -0.012 4.012 11 C -0.106 4.106 12 H 0.111 0.889 13 C -0.167 4.167 14 C 0.016 3.984 15 N -0.310 5.310 16 C -0.381 4.381 17 H 0.082 0.918 18 C -0.192 4.192 19 N -0.545 5.545 20 Si 0.727 3.273 21 H -0.213 1.213 22 H -0.217 1.217 23 H -0.204 1.204 24 C 0.053 3.947 25 C -0.134 4.134 26 H 0.083 0.917 27 C -0.021 4.021 28 H 0.088 0.912 29 H 0.078 0.922 30 H 0.106 0.894 31 H 0.182 0.818 32 H 0.211 0.789 33 H 0.093 0.907 34 H 0.080 0.920 35 H 0.079 0.921 36 H 0.068 0.932 37 H 0.039 0.961 38 H 0.073 0.927 39 H 0.064 0.936 40 H 0.045 0.955 41 H 0.104 0.896 42 H 0.081 0.919 43 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges -8.979 6.701 6.062 12.739 hybrid contribution -0.518 -0.115 -0.212 0.571 sum -9.497 6.586 5.850 12.953 Atomic orbital electron populations 1.20578 0.88925 1.03243 1.02609 1.19817 0.97304 0.89926 0.99191 1.25265 0.96723 1.02361 1.14389 1.83098 1.05356 0.97752 1.69484 1.26832 1.00947 1.03057 1.04384 1.20066 0.92073 0.94027 1.11149 1.17206 0.85380 0.82791 0.76531 1.90706 1.14289 1.86172 1.51621 1.48428 1.07639 1.06356 1.71322 1.22574 0.98267 0.80536 0.99837 1.22298 0.93552 0.98909 0.95846 0.88899 1.21988 0.99138 1.01233 0.94339 1.20901 0.87599 0.94620 0.95258 1.43955 1.35928 1.46165 1.04959 1.19127 0.91152 1.13743 1.14044 0.91769 1.25077 0.95901 0.98219 1.00039 1.70013 1.11057 1.34135 1.39298 0.86370 0.79084 0.83022 0.78857 1.21295 1.21663 1.20352 1.20097 0.91093 1.00107 0.83435 1.22143 0.98383 0.92908 1.00016 0.91695 1.22381 0.78845 0.99733 1.01143 0.91215 0.92161 0.89377 0.81753 0.78919 0.90702 0.92033 0.92130 0.93213 0.96082 0.92721 0.93560 0.95548 0.89599 0.91895 0.89098 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -1.21 9.47 36.00 0.34 -0.87 16 2 C -0.05 -0.73 6.01 -104.06 -0.62 -1.35 16 3 C -0.25 -3.08 10.91 28.86 0.31 -2.76 16 4 S 0.18 2.21 23.02 -107.50 -2.48 -0.27 16 5 C -0.21 -3.19 9.43 29.93 0.28 -2.91 16 6 C -0.16 -2.48 5.97 -104.63 -0.62 -3.11 16 7 C 0.59 10.36 7.82 -12.62 -0.10 10.26 16 8 O -0.55 -10.50 14.60 5.25 0.08 -10.42 16 9 N -0.60 -9.92 2.85 -171.47 -0.49 -10.41 16 10 C 0.11 1.65 6.16 -1.86 -0.01 1.63 16 11 C -0.09 -1.33 3.71 -88.52 -0.33 -1.66 16 12 H 0.09 1.29 8.14 -51.93 -0.42 0.86 16 13 C -0.13 -2.14 4.97 -26.81 -0.13 -2.28 16 14 C 0.14 2.81 6.52 -3.77 -0.02 2.79 16 15 N -0.59 -13.49 2.87 -173.83 -0.50 -13.99 16 16 C -0.25 -6.44 9.64 -15.06 -0.15 -6.59 16 17 H 0.06 1.66 7.88 -52.49 -0.41 1.25 16 18 C 0.01 0.18 4.95 -17.43 -0.09 0.09 16 19 N -0.90 -24.55 11.30 55.49 0.63 -23.92 16 20 Si 0.90 20.64 29.58 -169.99 -5.03 15.61 16 21 H -0.29 -6.49 7.11 56.52 0.40 -6.09 16 22 H -0.29 -6.81 7.11 56.52 0.40 -6.41 16 23 H -0.28 -6.36 7.11 56.52 0.40 -5.96 16 24 C 0.18 3.81 4.62 -4.94 -0.02 3.79 16 25 C -0.11 -1.91 2.69 -90.95 -0.24 -2.15 16 26 H 0.06 0.99 8.14 -51.93 -0.42 0.57 16 27 C 0.10 1.66 3.93 -3.45 -0.01 1.64 16 28 H 0.07 0.84 8.14 -51.93 -0.42 0.42 16 29 H 0.06 0.62 8.13 -51.93 -0.42 0.20 16 30 H 0.09 1.30 6.20 -51.93 -0.32 0.98 16 31 H 0.16 1.54 8.06 -52.48 -0.42 1.12 16 32 H 0.19 2.91 3.72 -52.48 -0.20 2.72 16 33 H 0.07 1.14 7.92 -51.93 -0.41 0.73 16 34 H 0.06 0.85 8.14 -51.93 -0.42 0.42 16 35 H 0.06 1.13 7.13 -51.92 -0.37 0.76 16 36 H 0.05 0.74 8.14 -51.93 -0.42 0.31 16 37 H 0.02 0.42 8.14 -51.93 -0.42 -0.01 16 38 H 0.05 1.09 7.96 -51.93 -0.41 0.67 16 39 H 0.25 6.76 8.31 -40.82 -0.34 6.42 16 40 H 0.03 0.60 8.14 -51.93 -0.42 0.18 16 41 H 0.09 2.04 6.22 -51.93 -0.32 1.72 16 42 H 0.06 0.95 6.94 -51.93 -0.36 0.58 16 43 H 0.09 1.70 6.52 -51.93 -0.34 1.36 16 LS Contribution 344.34 15.07 5.19 5.19 Total: -1.00 -28.76 344.34 -10.11 -38.87 By element: Atomic # 1 Polarization: 8.90 SS G_CDS: -6.09 Total: 2.81 kcal Atomic # 6 Polarization: -2.05 SS G_CDS: -1.42 Total: -3.47 kcal Atomic # 7 Polarization: -47.96 SS G_CDS: -0.36 Total: -48.32 kcal Atomic # 8 Polarization: -10.50 SS G_CDS: 0.08 Total: -10.42 kcal Atomic # 14 Polarization: 20.64 SS G_CDS: -5.03 Total: 15.61 kcal Atomic # 16 Polarization: 2.21 SS G_CDS: -2.48 Total: -0.27 kcal Total LS contribution 5.19 Total: 5.19 kcal Total: -28.76 -10.11 -38.87 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001087924748.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 71.504 kcal (2) G-P(sol) polarization free energy of solvation -28.765 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 42.739 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.106 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.871 kcal (6) G-S(sol) free energy of system = (1) + (5) 32.634 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.22 seconds