Wall clock time and date at job start Tue Mar 31 2020 12:20:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50694 * 1 3 3 C 1.32775 * 123.45801 * 2 1 4 4 S 1.75500 * 110.57748 * 180.24826 * 3 2 1 5 5 C 1.70449 * 92.44301 * 359.74220 * 4 3 2 6 6 C 1.36006 * 110.81921 * 359.97438 * 5 4 3 7 7 C 1.47186 * 123.46440 * 179.97438 * 6 5 4 8 8 O 1.21633 * 120.00509 * 173.81401 * 7 6 5 9 9 N 1.34785 * 119.99517 * 353.80665 * 7 6 5 10 10 C 1.47641 * 125.72802 * 184.59527 * 9 7 6 11 11 C 1.55913 * 104.41795 * 155.01464 * 10 9 7 12 12 H 1.09003 * 113.53982 * 159.13736 * 11 10 9 13 13 C 1.53067 * 106.17251 * 283.25354 * 11 10 9 14 14 C 1.52780 * 110.77451 * 163.38315 * 13 11 10 15 15 N 1.47199 * 107.81249 * 302.30062 * 14 13 11 16 16 C 1.36934 * 121.32230 * 237.93416 * 15 14 13 17 17 H 1.07992 * 120.00289 * 29.85873 * 16 15 14 18 18 C 1.38817 * 119.99790 * 209.84829 * 16 15 14 19 19 N 1.31620 * 119.99542 * 15.68222 * 18 16 15 20 20 Si 1.86794 * 120.00206 * 195.67570 * 18 16 15 21 21 H 1.48496 * 109.47185 * 90.00050 * 20 18 16 22 22 H 1.48496 * 109.47199 * 210.00730 * 20 18 16 23 23 H 1.48509 * 109.47128 * 330.00485 * 20 18 16 24 24 C 1.46723 * 117.34880 * 57.95716 * 15 14 13 25 25 C 1.50979 * 111.06262 * 307.68471 * 24 15 14 26 26 H 1.08996 * 108.99129 * 167.68207 * 25 24 15 27 27 C 1.47265 * 125.74236 * 4.62304 * 9 7 6 28 28 H 1.09003 * 109.47071 * 270.21000 * 1 2 3 29 29 H 1.09000 * 109.47527 * 30.21049 * 1 2 3 30 30 H 1.08995 * 109.47297 * 150.21437 * 1 2 3 31 31 H 1.08003 * 124.71342 * 359.97438 * 3 2 1 32 32 H 1.08006 * 124.59048 * 179.97438 * 5 4 3 33 33 H 1.08998 * 110.44812 * 36.27899 * 10 9 7 34 34 H 1.09003 * 110.44083 * 273.74364 * 10 9 7 35 35 H 1.09009 * 109.21099 * 43.06672 * 13 11 10 36 36 H 1.09001 * 109.21071 * 283.71226 * 13 11 10 37 37 H 1.09007 * 109.78977 * 61.88166 * 14 13 11 38 38 H 1.09001 * 109.79375 * 182.66335 * 14 13 11 39 39 H 0.97005 * 119.99465 * 179.97438 * 19 18 16 40 40 H 1.08999 * 109.15838 * 68.08999 * 24 15 14 41 41 H 1.09003 * 109.15909 * 187.32988 * 24 15 14 42 42 H 1.09003 * 110.04975 * 61.30558 * 27 9 7 43 43 H 1.09005 * 110.06017 * 299.80953 * 27 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.2390 1.1077 0.0000 4 16 3.9498 0.7165 -0.0071 5 6 3.6410 -0.9598 -0.0023 6 6 2.3032 -1.2049 0.0049 7 6 1.7262 -2.5589 0.0099 8 8 0.5250 -2.7077 0.1298 9 7 2.5290 -3.6339 -0.1186 10 6 2.0809 -5.0366 -0.2258 11 6 3.2404 -5.7582 -0.9780 12 1 3.2491 -6.8382 -0.8310 13 6 3.1000 -5.3688 -2.4517 14 6 4.3883 -5.6682 -3.2164 15 7 5.4814 -4.9290 -2.5639 16 6 6.2406 -4.0234 -3.2556 17 1 5.8106 -3.4782 -4.0827 18 6 7.5629 -3.8060 -2.8936 19 7 8.1802 -4.6645 -2.1098 20 14 8.4663 -2.2953 -3.5188 21 1 8.2799 -1.1756 -2.5614 22 1 9.9137 -2.6017 -3.6467 23 1 7.9233 -1.9076 -4.8456 24 6 5.7253 -5.2017 -1.1430 25 6 4.4557 -5.0620 -0.3379 26 1 4.6184 -5.4784 0.6561 27 6 4.0003 -3.6070 -0.1751 28 1 -0.3633 0.0038 1.0277 29 1 -0.3634 0.8881 -0.5171 30 1 -0.3633 -0.8918 -0.5105 31 1 1.8374 2.1103 -0.0004 32 1 4.4044 -1.7239 -0.0047 33 1 1.1573 -5.0984 -0.8013 34 1 1.9429 -5.4690 0.7652 35 1 2.8807 -4.3033 -2.5218 36 1 2.2800 -5.9336 -2.8953 37 1 4.5959 -6.7378 -3.1853 38 1 4.2875 -5.3419 -4.2515 39 1 9.1044 -4.5128 -1.8571 40 1 6.1081 -6.2164 -1.0340 41 1 6.4666 -4.4972 -0.7656 42 1 4.4022 -3.1907 0.7487 43 1 4.3310 -3.0141 -1.0279 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001087924748.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:20:37 Heat of formation + Delta-G solvation = 17.906759 kcal Electronic energy + Delta-G solvation = -25900.781758 eV Core-core repulsion = 22458.820921 eV Total energy + Delta-G solvation = -3441.960838 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 320.130 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -41.76683 -39.90857 -38.04904 -36.90716 -34.50399 -32.85344 -32.40313 -31.50049 -29.17362 -28.28671 -27.59389 -25.95494 -24.50370 -23.15835 -22.82565 -21.41965 -20.19045 -19.65543 -18.71457 -18.21841 -17.56953 -17.26620 -16.67638 -16.32079 -15.74449 -15.44688 -15.30060 -15.18337 -14.90675 -14.45190 -14.33754 -14.15187 -13.91648 -13.75608 -13.60799 -13.25594 -13.10371 -13.01422 -12.83291 -12.81672 -12.72760 -12.53290 -12.30894 -12.04163 -11.92371 -11.84731 -11.65767 -11.05866 -11.02371 -10.84808 -10.51802 -9.88892 -9.74750 -9.26386 -8.61077 -7.86025 -5.31768 -0.23502 0.60887 0.94045 0.98198 1.46203 1.49293 1.56399 1.94598 2.25867 2.51693 3.27549 3.43920 3.59431 3.70963 3.75041 3.85513 3.92170 4.19768 4.22107 4.31344 4.42352 4.52716 4.58440 4.61600 4.65879 4.67924 4.72842 4.82469 4.85085 4.93248 4.96970 5.07106 5.12340 5.14747 5.16855 5.26686 5.32693 5.42000 5.53658 5.56023 5.66671 5.75135 6.41228 6.43637 7.07224 7.18383 7.87330 8.43483 9.20181 Molecular weight = 320.13amu Principal moments of inertia in cm(-1) A = 0.011635 B = 0.005702 C = 0.004186 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2406.017170 B = 4909.348271 C = 6688.088177 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.089 4.089 2 C -0.076 4.076 3 C -0.237 4.237 4 S 0.212 5.788 5 C -0.232 4.232 6 C -0.177 4.177 7 C 0.585 3.415 8 O -0.570 6.570 9 N -0.606 5.606 10 C 0.113 3.887 11 C -0.079 4.079 12 H 0.118 0.882 13 C -0.116 4.116 14 C 0.140 3.860 15 N -0.603 5.603 16 C -0.256 4.256 17 H 0.057 0.943 18 C -0.037 4.037 19 N -0.928 5.928 20 Si 0.951 3.049 21 H -0.279 1.279 22 H -0.296 1.296 23 H -0.275 1.275 24 C 0.192 3.808 25 C -0.110 4.110 26 H 0.087 0.913 27 C 0.113 3.887 28 H 0.073 0.927 29 H 0.085 0.915 30 H 0.062 0.938 31 H 0.198 0.802 32 H 0.185 0.815 33 H 0.074 0.926 34 H 0.081 0.919 35 H 0.039 0.961 36 H 0.075 0.925 37 H 0.025 0.975 38 H 0.046 0.954 39 H 0.250 0.750 40 H 0.006 0.994 41 H 0.056 0.944 42 H 0.076 0.924 43 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.870 6.896 6.534 14.436 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.086 4.086 3 C -0.372 4.372 4 S 0.480 5.520 5 C -0.370 4.370 6 C -0.195 4.195 7 C 0.375 3.625 8 O -0.453 6.453 9 N -0.338 5.338 10 C -0.009 4.009 11 C -0.098 4.098 12 H 0.136 0.864 13 C -0.155 4.155 14 C 0.014 3.986 15 N -0.327 5.327 16 C -0.386 4.386 17 H 0.074 0.926 18 C -0.233 4.233 19 N -0.574 5.574 20 Si 0.780 3.220 21 H -0.206 1.206 22 H -0.222 1.222 23 H -0.200 1.200 24 C 0.065 3.935 25 C -0.131 4.131 26 H 0.105 0.895 27 C -0.009 4.009 28 H 0.091 0.909 29 H 0.104 0.896 30 H 0.081 0.919 31 H 0.215 0.785 32 H 0.202 0.798 33 H 0.093 0.907 34 H 0.099 0.901 35 H 0.058 0.942 36 H 0.094 0.906 37 H 0.043 0.957 38 H 0.065 0.935 39 H 0.060 0.940 40 H 0.024 0.976 41 H 0.075 0.925 42 H 0.094 0.906 43 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -10.028 7.787 6.626 14.322 hybrid contribution -0.180 -0.443 -0.442 0.651 sum -10.208 7.345 6.184 14.014 Atomic orbital electron populations 1.20527 0.88178 1.03212 1.02859 1.20006 0.98073 0.89852 1.00707 1.25647 0.96276 1.03305 1.11955 1.82959 1.05495 0.95469 1.68086 1.26834 1.00538 1.04723 1.04894 1.20198 0.92753 0.94030 1.12514 1.17529 0.85222 0.83578 0.76172 1.90685 1.15098 1.86615 1.52869 1.48472 1.07404 1.06930 1.70949 1.22633 0.97783 0.79685 1.00783 1.22322 0.92704 1.00205 0.94533 0.86448 1.21835 0.98092 1.00285 0.95290 1.21007 0.87986 0.94333 0.95238 1.44163 1.36336 1.46321 1.05845 1.19295 0.91521 1.14007 1.13794 0.92573 1.25644 0.96550 1.00396 1.00704 1.70138 1.10997 1.35565 1.40689 0.85516 0.77512 0.80474 0.78527 1.20587 1.22227 1.20009 1.19853 0.92585 0.97878 0.83150 1.21965 0.96921 0.93780 1.00393 0.89462 1.22185 0.79030 0.98986 1.00737 0.90851 0.89599 0.91891 0.78467 0.79775 0.90731 0.90109 0.94248 0.90618 0.95686 0.93508 0.94033 0.97570 0.92534 0.90590 0.91697 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -2.15 9.47 71.23 0.67 -1.48 16 2 C -0.08 -2.04 6.01 -19.47 -0.12 -2.16 16 3 C -0.24 -5.14 10.91 66.64 0.73 -4.41 16 4 S 0.21 4.92 23.02 -56.49 -1.30 3.62 16 5 C -0.23 -6.79 9.43 67.30 0.63 -6.16 16 6 C -0.18 -5.57 5.97 -19.87 -0.12 -5.69 16 7 C 0.59 20.34 7.82 86.59 0.68 21.02 16 8 O -0.57 -21.80 14.60 -4.14 -0.06 -21.86 16 9 N -0.61 -19.41 2.85 -814.65 -2.32 -21.73 16 10 C 0.11 3.15 6.16 87.17 0.54 3.69 16 11 C -0.08 -2.25 3.71 -9.43 -0.04 -2.29 16 12 H 0.12 2.86 8.14 -2.39 -0.02 2.84 16 13 C -0.12 -3.75 4.97 30.54 0.15 -3.60 16 14 C 0.14 5.49 6.52 86.17 0.56 6.05 16 15 N -0.60 -28.11 2.87 -703.89 -2.02 -30.13 16 16 C -0.26 -13.36 9.64 84.04 0.81 -12.55 16 17 H 0.06 2.97 7.88 -2.91 -0.02 2.94 16 18 C -0.04 -1.93 4.95 84.86 0.42 -1.51 16 19 N -0.93 -51.67 11.30 21.65 0.24 -51.43 16 20 Si 0.95 42.81 29.58 68.60 2.03 44.84 16 21 H -0.28 -12.17 7.11 99.48 0.71 -11.46 16 22 H -0.30 -13.49 7.11 99.48 0.71 -12.78 16 23 H -0.28 -12.11 7.11 99.48 0.71 -11.40 16 24 C 0.19 8.25 4.62 85.68 0.40 8.64 16 25 C -0.11 -3.60 2.69 -11.01 -0.03 -3.63 16 26 H 0.09 2.50 8.14 -2.39 -0.02 2.48 16 27 C 0.11 3.67 3.93 86.34 0.34 4.01 16 28 H 0.07 1.67 8.14 -2.39 -0.02 1.65 16 29 H 0.09 1.57 8.13 -2.39 -0.02 1.55 16 30 H 0.06 1.85 6.20 -2.39 -0.01 1.84 16 31 H 0.20 2.87 8.06 -2.91 -0.02 2.85 16 32 H 0.19 5.63 3.72 -2.91 -0.01 5.62 16 33 H 0.07 2.12 7.92 -2.39 -0.02 2.10 16 34 H 0.08 1.99 8.14 -2.39 -0.02 1.97 16 35 H 0.04 1.45 7.13 -2.38 -0.02 1.43 16 36 H 0.08 2.07 8.14 -2.39 -0.02 2.05 16 37 H 0.03 0.97 8.14 -2.38 -0.02 0.95 16 38 H 0.05 1.87 7.96 -2.39 -0.02 1.85 16 39 H 0.25 13.59 8.31 -92.70 -0.77 12.82 16 40 H 0.01 0.29 8.14 -2.39 -0.02 0.27 16 41 H 0.06 2.76 6.22 -2.39 -0.01 2.74 16 42 H 0.08 2.26 6.94 -2.39 -0.02 2.24 16 43 H 0.06 2.48 6.52 -2.38 -0.02 2.46 16 Total: -1.00 -62.96 344.34 3.23 -59.73 By element: Atomic # 1 Polarization: 16.00 SS G_CDS: 1.02 Total: 17.02 kcal Atomic # 6 Polarization: -5.69 SS G_CDS: 5.63 Total: -0.06 kcal Atomic # 7 Polarization: -99.19 SS G_CDS: -4.09 Total: -103.29 kcal Atomic # 8 Polarization: -21.80 SS G_CDS: -0.06 Total: -21.86 kcal Atomic # 14 Polarization: 42.81 SS G_CDS: 2.03 Total: 44.84 kcal Atomic # 16 Polarization: 4.92 SS G_CDS: -1.30 Total: 3.62 kcal Total: -62.96 3.23 -59.73 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001087924748.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 77.639 kcal (2) G-P(sol) polarization free energy of solvation -62.958 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 14.682 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.225 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.733 kcal (6) G-S(sol) free energy of system = (1) + (5) 17.907 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds