Wall clock time and date at job start Tue Mar 31 2020 12:05:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 C 1.33813 * 124.52275 * 2 1 4 4 C 1.37477 * 115.09998 * 179.97438 * 3 2 1 5 5 C 1.36651 * 113.29625 * 0.02562 * 4 3 2 6 6 C 1.46578 * 125.45722 * 179.97438 * 5 4 3 7 7 O 1.21702 * 119.99994 * 354.01140 * 6 5 4 8 8 N 1.34776 * 120.00082 * 174.01157 * 6 5 4 9 9 C 1.47198 * 126.70130 * 353.97166 * 8 6 5 10 10 C 1.53744 * 106.42327 * 211.32892 * 9 8 6 11 11 H 1.09007 * 112.28132 * 104.36256 * 10 9 8 12 12 C 1.54451 * 109.01080 * 229.45201 * 10 9 8 13 13 N 1.48341 * 104.32104 * 137.93102 * 12 10 9 14 14 C 1.36937 * 128.19791 * 138.17447 * 13 12 10 15 15 H 1.07993 * 119.99965 * 194.64221 * 14 13 12 16 16 C 1.38813 * 119.99795 * 14.64296 * 14 13 12 17 17 N 1.31617 * 120.00338 * 22.88994 * 16 14 13 18 18 Si 1.86805 * 119.99635 * 202.88958 * 16 14 13 19 19 H 1.48495 * 109.46950 * 179.97438 * 18 16 14 20 20 H 1.48500 * 109.47161 * 59.99818 * 18 16 14 21 21 H 1.48499 * 109.46822 * 299.99747 * 18 16 14 22 22 C 1.48334 * 103.60078 * 318.43162 * 13 12 10 23 23 C 1.54067 * 104.51676 * 41.53569 * 22 13 12 24 24 C 1.53003 * 112.57789 * 97.43422 * 23 22 13 25 25 C 1.47200 * 126.70435 * 173.92184 * 8 6 5 26 26 S 1.70618 * 124.51878 * 180.28100 * 2 1 3 27 27 H 1.08996 * 109.47461 * 89.99263 * 1 2 3 28 28 H 1.08996 * 109.47395 * 209.99782 * 1 2 3 29 29 H 1.09000 * 109.47133 * 329.99416 * 1 2 3 30 30 H 1.08001 * 122.44870 * 359.97438 * 3 2 1 31 31 H 1.07994 * 123.34989 * 179.97438 * 4 3 2 32 32 H 1.08997 * 110.06971 * 92.09126 * 9 8 6 33 33 H 1.08995 * 110.06487 * 330.56902 * 9 8 6 34 34 H 1.09002 * 110.46072 * 19.22163 * 12 10 9 35 35 H 1.09003 * 110.46702 * 256.63969 * 12 10 9 36 36 H 0.97001 * 120.00282 * 6.01435 * 17 16 14 37 37 H 1.08993 * 110.45928 * 160.27906 * 22 13 12 38 38 H 1.09000 * 110.46209 * 282.85726 * 22 13 12 39 39 H 1.09005 * 109.46915 * 302.11037 * 24 23 22 40 40 H 1.09003 * 109.47204 * 62.10768 * 24 23 22 41 41 H 1.08996 * 109.46973 * 182.11201 * 24 23 22 42 42 H 1.08998 * 110.06453 * 267.90878 * 25 8 6 43 43 H 1.08996 * 110.05934 * 29.37023 * 25 8 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2654 1.1025 0.0000 4 6 3.6216 0.8774 0.0006 5 6 3.9493 -0.4492 0.0005 6 6 5.3123 -0.9884 0.0004 7 8 6.2637 -0.2376 -0.1095 8 7 5.5119 -2.3158 0.1221 9 6 4.4871 -3.3390 0.3860 10 6 5.1798 -4.4502 1.1916 11 1 4.9121 -4.4231 2.2479 12 6 4.8628 -5.8150 0.5416 13 7 6.1528 -6.5465 0.5767 14 6 6.3722 -7.8620 0.8876 15 1 7.3728 -8.2062 1.1033 16 6 5.3083 -8.7529 0.9256 17 7 4.2063 -8.4910 0.2554 18 14 5.4409 -10.3236 1.9281 19 1 4.1795 -11.0974 1.8048 20 1 5.6742 -9.9823 3.3544 21 1 6.5741 -11.1393 1.4225 22 6 7.1496 -5.5141 0.2013 23 6 6.7019 -4.2508 0.9611 24 6 7.4689 -4.0497 2.2697 25 6 6.7971 -3.0255 0.0160 26 16 2.4739 -1.4058 -0.0069 27 1 -0.3634 0.0001 -1.0276 28 1 -0.3634 -0.8900 0.5138 29 1 -0.3633 0.8899 0.5139 30 1 1.8429 2.0964 -0.0004 31 1 4.3550 1.6701 0.0002 32 1 4.1078 -3.7396 -0.5541 33 1 3.6707 -2.9095 0.9666 34 1 4.5297 -5.6789 -0.4873 35 1 4.1075 -6.3466 1.1205 36 1 4.1682 -7.7213 -0.3338 37 1 8.1478 -5.8149 0.5192 38 1 7.1283 -5.3370 -0.8740 39 1 7.3367 -4.9246 2.9064 40 1 8.5286 -3.9150 2.0528 41 1 7.0877 -3.1665 2.7821 42 1 6.9601 -3.3525 -1.0109 43 1 7.6111 -2.3744 0.3345 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001091441668.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:05:33 Heat of formation + Delta-G solvation = 29.218398 kcal Electronic energy + Delta-G solvation = -25073.989689 eV Core-core repulsion = 21632.519361 eV Total energy + Delta-G solvation = -3441.470328 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 320.130 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -40.40966 -38.81453 -37.61914 -35.26162 -33.08558 -32.15848 -30.96988 -29.94800 -28.03894 -26.34142 -25.63064 -25.17381 -23.63401 -22.59076 -20.97189 -20.43981 -18.95113 -18.37481 -17.82678 -17.34976 -16.05300 -15.95240 -15.62990 -14.68091 -14.65545 -14.36653 -14.13280 -13.91526 -13.74742 -13.46730 -13.31005 -12.95237 -12.82910 -12.54561 -12.38200 -12.30401 -12.16039 -11.92633 -11.77167 -11.42968 -11.08599 -10.81367 -10.72883 -10.52488 -10.28673 -10.19921 -10.14629 -9.99966 -9.91708 -9.45272 -8.91199 -8.71166 -8.61107 -8.49815 -7.08460 -6.15794 -3.19546 0.38607 1.34270 1.77952 2.24916 2.95803 3.17864 3.46895 3.50122 3.67889 4.39931 4.51675 4.56874 4.68267 4.88169 4.94371 5.07636 5.15288 5.20872 5.27259 5.34708 5.37952 5.42345 5.44940 5.56255 5.62673 5.76967 5.82148 5.85745 5.88562 5.97657 6.01337 6.13755 6.16631 6.21945 6.29150 6.41932 6.51262 6.57327 6.72277 6.84535 6.93326 7.52217 7.61383 8.09959 8.36794 8.91494 9.72994 10.33533 11.20344 Molecular weight = 320.13amu Principal moments of inertia in cm(-1) A = 0.017963 B = 0.003662 C = 0.003154 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1558.354554 B = 7643.651307 C = 8876.626774 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.085 4.085 2 C -0.216 4.216 3 C -0.159 4.159 4 C -0.054 4.054 5 C -0.267 4.267 6 C 0.606 3.394 7 O -0.539 6.539 8 N -0.611 5.611 9 C 0.097 3.903 10 C -0.107 4.107 11 H 0.088 0.912 12 C 0.140 3.860 13 N -0.598 5.598 14 C -0.325 4.325 15 H 0.069 0.931 16 C -0.027 4.027 17 N -0.925 5.925 18 Si 1.068 2.932 19 H -0.285 1.285 20 H -0.294 1.294 21 H -0.293 1.293 22 C 0.139 3.861 23 C -0.084 4.084 24 C -0.120 4.120 25 C 0.118 3.882 26 S 0.229 5.771 27 H 0.077 0.923 28 H 0.071 0.929 29 H 0.076 0.924 30 H 0.140 0.860 31 H 0.151 0.849 32 H 0.079 0.921 33 H 0.075 0.925 34 H 0.027 0.973 35 H 0.075 0.925 36 H 0.268 0.732 37 H 0.053 0.947 38 H 0.027 0.973 39 H 0.066 0.934 40 H 0.053 0.947 41 H 0.048 0.952 42 H 0.072 0.928 43 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.293 16.447 0.480 17.284 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.336 4.336 3 C -0.190 4.190 4 C -0.088 4.088 5 C -0.388 4.388 6 C 0.395 3.605 7 O -0.418 6.418 8 N -0.343 5.343 9 C -0.027 4.027 10 C -0.128 4.128 11 H 0.106 0.894 12 C 0.013 3.987 13 N -0.322 5.322 14 C -0.452 4.452 15 H 0.087 0.913 16 C -0.228 4.228 17 N -0.567 5.567 18 Si 0.897 3.103 19 H -0.210 1.210 20 H -0.221 1.221 21 H -0.220 1.220 22 C 0.012 3.988 23 C -0.086 4.086 24 C -0.177 4.177 25 C -0.004 4.004 26 S 0.497 5.503 27 H 0.095 0.905 28 H 0.090 0.910 29 H 0.094 0.906 30 H 0.158 0.842 31 H 0.168 0.832 32 H 0.098 0.902 33 H 0.093 0.907 34 H 0.045 0.955 35 H 0.094 0.906 36 H 0.079 0.921 37 H 0.072 0.928 38 H 0.044 0.956 39 H 0.085 0.915 40 H 0.072 0.928 41 H 0.067 0.933 42 H 0.091 0.909 43 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges -5.937 13.855 0.929 15.102 hybrid contribution 1.058 3.027 -0.596 3.262 sum -4.878 16.882 0.333 17.576 Atomic orbital electron populations 1.20381 0.87615 1.03396 1.02991 1.24692 1.01965 0.99616 1.07286 1.19903 0.92552 0.99459 1.07048 1.20688 0.96166 0.95030 0.96872 1.24531 0.96807 0.98071 1.19367 1.16546 0.86878 0.80418 0.76680 1.90806 1.42215 1.57182 1.51622 1.48419 1.10650 1.05063 1.70171 1.22506 0.90824 0.88854 1.00505 1.23110 0.94130 0.95816 0.99789 0.89360 1.21888 0.91120 0.88724 0.96953 1.45148 1.01239 1.06039 1.79768 1.19800 0.96692 0.82994 1.45718 0.91338 1.25753 0.93978 1.02207 1.00858 1.70790 1.29892 1.30144 1.25889 0.83477 0.75585 0.75325 0.75901 1.21006 1.22085 1.22043 1.21745 0.94229 0.87648 0.95167 1.22538 0.95456 0.94920 0.95731 1.21570 0.98924 1.01468 0.95744 1.22442 0.85495 0.92875 0.99631 1.83657 0.93489 1.05838 1.67280 0.90457 0.91000 0.90557 0.84247 0.83188 0.90249 0.90702 0.95497 0.90621 0.92067 0.92811 0.95553 0.91530 0.92788 0.93335 0.90941 0.90279 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -0.61 10.31 36.01 0.37 -0.23 16 2 C -0.22 -2.16 6.28 -35.86 -0.23 -2.38 16 3 C -0.16 -1.62 9.99 -41.41 -0.41 -2.03 16 4 C -0.05 -0.66 10.02 -40.43 -0.41 -1.06 16 5 C -0.27 -3.69 6.34 -36.79 -0.23 -3.92 16 6 C 0.61 9.90 7.83 -12.90 -0.10 9.80 16 7 O -0.54 -10.21 17.05 5.19 0.09 -10.12 16 8 N -0.61 -9.55 3.32 -172.42 -0.57 -10.13 16 9 C 0.10 1.44 5.13 -3.27 -0.02 1.43 16 10 C -0.11 -1.84 3.71 -88.29 -0.33 -2.17 16 11 H 0.09 1.50 7.93 -51.93 -0.41 1.09 16 12 C 0.14 2.99 4.62 -2.27 -0.01 2.98 16 13 N -0.60 -14.33 3.30 -168.71 -0.56 -14.88 16 14 C -0.32 -8.79 10.26 -15.06 -0.15 -8.94 16 15 H 0.07 1.85 7.93 -52.49 -0.42 1.43 16 16 C -0.03 -0.76 5.19 -17.43 -0.09 -0.85 16 17 N -0.93 -26.89 12.56 55.49 0.70 -26.19 16 18 Si 1.07 24.60 29.98 -169.99 -5.10 19.50 16 19 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 20 H -0.29 -6.53 7.11 56.52 0.40 -6.13 16 21 H -0.29 -6.49 7.11 56.52 0.40 -6.09 16 22 C 0.14 2.73 6.39 -2.47 -0.02 2.71 16 23 C -0.08 -1.39 1.10 -151.69 -0.17 -1.56 16 24 C -0.12 -1.83 8.64 37.16 0.32 -1.51 16 25 C 0.12 1.85 6.29 -2.58 -0.02 1.83 16 26 S 0.23 2.61 18.74 -107.50 -2.02 0.59 16 27 H 0.08 0.48 8.14 -51.93 -0.42 0.06 16 28 H 0.07 0.47 8.14 -51.93 -0.42 0.05 16 29 H 0.08 0.44 8.14 -51.93 -0.42 0.02 16 30 H 0.14 1.08 8.06 -52.49 -0.42 0.66 16 31 H 0.15 1.72 8.06 -52.49 -0.42 1.29 16 32 H 0.08 1.17 7.11 -51.93 -0.37 0.80 16 33 H 0.08 1.00 5.24 -33.03 -0.17 0.83 16 34 H 0.03 0.58 6.91 -51.93 -0.36 0.23 16 35 H 0.08 1.81 6.82 -51.93 -0.35 1.46 16 36 H 0.27 7.72 6.08 -40.82 -0.25 7.47 16 37 H 0.05 1.04 7.92 -51.93 -0.41 0.63 16 38 H 0.03 0.52 7.18 -51.93 -0.37 0.15 16 39 H 0.07 1.11 8.14 -51.93 -0.42 0.69 16 40 H 0.05 0.75 8.14 -51.93 -0.42 0.32 16 41 H 0.05 0.70 8.14 -51.93 -0.42 0.28 16 42 H 0.07 1.12 7.15 -51.93 -0.37 0.75 16 43 H 0.08 1.23 7.59 -51.93 -0.39 0.84 16 LS Contribution 351.20 15.07 5.29 5.29 Total: -1.00 -31.60 351.20 -9.70 -41.31 By element: Atomic # 1 Polarization: 6.61 SS G_CDS: -6.06 Total: 0.55 kcal Atomic # 6 Polarization: -4.43 SS G_CDS: -1.48 Total: -5.92 kcal Atomic # 7 Polarization: -50.77 SS G_CDS: -0.43 Total: -51.20 kcal Atomic # 8 Polarization: -10.21 SS G_CDS: 0.09 Total: -10.12 kcal Atomic # 14 Polarization: 24.60 SS G_CDS: -5.10 Total: 19.50 kcal Atomic # 16 Polarization: 2.61 SS G_CDS: -2.02 Total: 0.59 kcal Total LS contribution 5.29 Total: 5.29 kcal Total: -31.60 -9.70 -41.31 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001091441668.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 70.526 kcal (2) G-P(sol) polarization free energy of solvation -31.603 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 38.923 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.705 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.308 kcal (6) G-S(sol) free energy of system = (1) + (5) 29.218 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds