Wall clock time and date at job start Tue Mar 31 2020 12:05:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 C 1.33813 * 124.52275 * 2 1 4 4 C 1.37477 * 115.09998 * 179.97438 * 3 2 1 5 5 C 1.36651 * 113.29625 * 0.02562 * 4 3 2 6 6 C 1.46578 * 125.45722 * 179.97438 * 5 4 3 7 7 O 1.21702 * 119.99994 * 354.01140 * 6 5 4 8 8 N 1.34776 * 120.00082 * 174.01157 * 6 5 4 9 9 C 1.47198 * 126.70130 * 353.97166 * 8 6 5 10 10 C 1.53744 * 106.42327 * 211.32892 * 9 8 6 11 11 H 1.09007 * 112.28132 * 104.36256 * 10 9 8 12 12 C 1.54451 * 109.01080 * 229.45201 * 10 9 8 13 13 N 1.48341 * 104.32104 * 137.93102 * 12 10 9 14 14 C 1.36937 * 128.19791 * 138.17447 * 13 12 10 15 15 H 1.07993 * 119.99965 * 194.64221 * 14 13 12 16 16 C 1.38813 * 119.99795 * 14.64296 * 14 13 12 17 17 N 1.31617 * 120.00338 * 22.88994 * 16 14 13 18 18 Si 1.86805 * 119.99635 * 202.88958 * 16 14 13 19 19 H 1.48495 * 109.46950 * 179.97438 * 18 16 14 20 20 H 1.48500 * 109.47161 * 59.99818 * 18 16 14 21 21 H 1.48499 * 109.46822 * 299.99747 * 18 16 14 22 22 C 1.48334 * 103.60078 * 318.43162 * 13 12 10 23 23 C 1.54067 * 104.51676 * 41.53569 * 22 13 12 24 24 C 1.53003 * 112.57789 * 97.43422 * 23 22 13 25 25 C 1.47200 * 126.70435 * 173.92184 * 8 6 5 26 26 S 1.70618 * 124.51878 * 180.28100 * 2 1 3 27 27 H 1.08996 * 109.47461 * 89.99263 * 1 2 3 28 28 H 1.08996 * 109.47395 * 209.99782 * 1 2 3 29 29 H 1.09000 * 109.47133 * 329.99416 * 1 2 3 30 30 H 1.08001 * 122.44870 * 359.97438 * 3 2 1 31 31 H 1.07994 * 123.34989 * 179.97438 * 4 3 2 32 32 H 1.08997 * 110.06971 * 92.09126 * 9 8 6 33 33 H 1.08995 * 110.06487 * 330.56902 * 9 8 6 34 34 H 1.09002 * 110.46072 * 19.22163 * 12 10 9 35 35 H 1.09003 * 110.46702 * 256.63969 * 12 10 9 36 36 H 0.97001 * 120.00282 * 6.01435 * 17 16 14 37 37 H 1.08993 * 110.45928 * 160.27906 * 22 13 12 38 38 H 1.09000 * 110.46209 * 282.85726 * 22 13 12 39 39 H 1.09005 * 109.46915 * 302.11037 * 24 23 22 40 40 H 1.09003 * 109.47204 * 62.10768 * 24 23 22 41 41 H 1.08996 * 109.46973 * 182.11201 * 24 23 22 42 42 H 1.08998 * 110.06453 * 267.90878 * 25 8 6 43 43 H 1.08996 * 110.05934 * 29.37023 * 25 8 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2654 1.1025 0.0000 4 6 3.6216 0.8774 0.0006 5 6 3.9493 -0.4492 0.0005 6 6 5.3123 -0.9884 0.0004 7 8 6.2637 -0.2376 -0.1095 8 7 5.5119 -2.3158 0.1221 9 6 4.4871 -3.3390 0.3860 10 6 5.1798 -4.4502 1.1916 11 1 4.9121 -4.4231 2.2479 12 6 4.8628 -5.8150 0.5416 13 7 6.1528 -6.5465 0.5767 14 6 6.3722 -7.8620 0.8876 15 1 7.3728 -8.2062 1.1033 16 6 5.3083 -8.7529 0.9256 17 7 4.2063 -8.4910 0.2554 18 14 5.4409 -10.3236 1.9281 19 1 4.1795 -11.0974 1.8048 20 1 5.6742 -9.9823 3.3544 21 1 6.5741 -11.1393 1.4225 22 6 7.1496 -5.5141 0.2013 23 6 6.7019 -4.2508 0.9611 24 6 7.4689 -4.0497 2.2697 25 6 6.7971 -3.0255 0.0160 26 16 2.4739 -1.4058 -0.0069 27 1 -0.3634 0.0001 -1.0276 28 1 -0.3634 -0.8900 0.5138 29 1 -0.3633 0.8899 0.5139 30 1 1.8429 2.0964 -0.0004 31 1 4.3550 1.6701 0.0002 32 1 4.1078 -3.7396 -0.5541 33 1 3.6707 -2.9095 0.9666 34 1 4.5297 -5.6789 -0.4873 35 1 4.1075 -6.3466 1.1205 36 1 4.1682 -7.7213 -0.3338 37 1 8.1478 -5.8149 0.5192 38 1 7.1283 -5.3370 -0.8740 39 1 7.3367 -4.9246 2.9064 40 1 8.5286 -3.9150 2.0528 41 1 7.0877 -3.1665 2.7821 42 1 6.9601 -3.3525 -1.0109 43 1 7.6111 -2.3744 0.3345 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001091441668.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:05:32 Heat of formation + Delta-G solvation = 11.346875 kcal Electronic energy + Delta-G solvation = -25074.764657 eV Core-core repulsion = 21632.519361 eV Total energy + Delta-G solvation = -3442.245296 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 320.130 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -41.75945 -40.06762 -38.62583 -36.85834 -34.71157 -33.07209 -32.46744 -31.59380 -29.06285 -27.80941 -27.10142 -26.65060 -24.65689 -23.95886 -22.31548 -21.89854 -20.31564 -19.46389 -19.37535 -18.85746 -17.28076 -16.97839 -16.82157 -16.26035 -15.96889 -15.72924 -15.53011 -15.39020 -15.04421 -14.76305 -14.39274 -14.25017 -13.96499 -13.79912 -13.56637 -13.32323 -13.21580 -13.00401 -12.89914 -12.74314 -12.56158 -12.49387 -12.35647 -11.98405 -11.90016 -11.67483 -11.61984 -11.54442 -11.33591 -11.18486 -10.59766 -10.04944 -9.60500 -9.53184 -9.05749 -8.30524 -5.29612 -0.54738 0.43642 0.90557 1.32551 1.60711 1.67834 1.74675 1.86505 2.05843 2.65422 3.14604 3.21402 3.29516 3.57612 3.76687 3.80982 3.87644 3.98831 4.04562 4.14467 4.26435 4.34473 4.37735 4.48032 4.58205 4.65491 4.66839 4.72175 4.72501 4.81235 4.86810 4.93904 5.04309 5.04919 5.08053 5.12952 5.17335 5.21036 5.26746 5.34788 5.42033 5.63509 6.28143 6.30707 6.85507 6.86442 7.68866 8.35080 9.06783 Molecular weight = 320.13amu Principal moments of inertia in cm(-1) A = 0.017963 B = 0.003662 C = 0.003154 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1558.354554 B = 7643.651307 C = 8876.626774 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.089 4.089 2 C -0.200 4.200 3 C -0.166 4.166 4 C -0.046 4.046 5 C -0.306 4.306 6 C 0.605 3.395 7 O -0.573 6.573 8 N -0.611 5.611 9 C 0.107 3.893 10 C -0.098 4.098 11 H 0.093 0.907 12 C 0.148 3.852 13 N -0.623 5.623 14 C -0.331 4.331 15 H 0.065 0.935 16 C -0.079 4.079 17 N -0.953 5.953 18 Si 1.117 2.883 19 H -0.292 1.292 20 H -0.280 1.280 21 H -0.278 1.278 22 C 0.138 3.862 23 C -0.074 4.074 24 C -0.113 4.113 25 C 0.122 3.878 26 S 0.225 5.775 27 H 0.090 0.910 28 H 0.077 0.923 29 H 0.095 0.905 30 H 0.168 0.832 31 H 0.152 0.848 32 H 0.080 0.920 33 H 0.093 0.907 34 H 0.021 0.979 35 H 0.044 0.956 36 H 0.257 0.743 37 H 0.055 0.945 38 H 0.027 0.973 39 H 0.050 0.950 40 H 0.070 0.930 41 H 0.059 0.941 42 H 0.073 0.927 43 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.226 18.019 1.122 19.097 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.320 4.320 3 C -0.195 4.195 4 C -0.081 4.081 5 C -0.425 4.425 6 C 0.396 3.604 7 O -0.455 6.455 8 N -0.343 5.343 9 C -0.017 4.017 10 C -0.119 4.119 11 H 0.111 0.889 12 C 0.022 3.978 13 N -0.348 5.348 14 C -0.459 4.459 15 H 0.082 0.918 16 C -0.274 4.274 17 N -0.597 5.597 18 Si 0.941 3.059 19 H -0.218 1.218 20 H -0.207 1.207 21 H -0.204 1.204 22 C 0.012 3.988 23 C -0.076 4.076 24 C -0.171 4.171 25 C -0.001 4.001 26 S 0.494 5.506 27 H 0.108 0.892 28 H 0.096 0.904 29 H 0.114 0.886 30 H 0.186 0.814 31 H 0.170 0.830 32 H 0.098 0.902 33 H 0.111 0.889 34 H 0.038 0.962 35 H 0.062 0.938 36 H 0.067 0.933 37 H 0.073 0.927 38 H 0.045 0.955 39 H 0.069 0.931 40 H 0.089 0.911 41 H 0.078 0.922 42 H 0.091 0.909 43 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges -6.850 15.448 1.570 16.972 hybrid contribution 1.300 2.627 -0.855 3.053 sum -5.550 18.075 0.715 18.921 Atomic orbital electron populations 1.20552 0.85282 1.04670 1.04188 1.25087 1.03379 0.98512 1.04981 1.20145 0.91556 1.00898 1.06884 1.20940 0.97364 0.94505 0.95263 1.24379 0.96338 0.99116 1.22698 1.16889 0.87674 0.80070 0.75757 1.90774 1.43587 1.57796 1.53377 1.48401 1.10565 1.05166 1.70133 1.22386 0.90887 0.88008 1.00440 1.22955 0.94902 0.94134 0.99941 0.88910 1.21768 0.89506 0.90205 0.96368 1.45383 1.03155 1.05999 1.80264 1.20056 0.96569 0.84608 1.44713 0.91758 1.27043 0.93733 1.05079 1.01516 1.70888 1.30970 1.30476 1.27386 0.82818 0.75582 0.72259 0.75217 1.21819 1.20666 1.20369 1.21873 0.93514 0.87847 0.95564 1.22415 0.95033 0.93869 0.96309 1.21518 0.99830 1.01188 0.94535 1.22356 0.85963 0.92380 0.99354 1.83567 0.92851 1.06667 1.67545 0.89157 0.90425 0.88607 0.81431 0.83027 0.90186 0.88894 0.96161 0.93753 0.93272 0.92689 0.95480 0.93062 0.91142 0.92204 0.90850 0.89817 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -0.94 10.31 71.24 0.73 -0.20 16 2 C -0.20 -3.40 6.28 24.68 0.15 -3.25 16 3 C -0.17 -2.88 9.99 21.08 0.21 -2.66 16 4 C -0.05 -1.05 10.02 21.72 0.22 -0.83 16 5 C -0.31 -8.10 6.34 24.08 0.15 -7.94 16 6 C 0.60 19.45 7.83 86.42 0.68 20.12 16 7 O -0.57 -21.63 17.05 -4.36 -0.07 -21.70 16 8 N -0.61 -18.68 3.32 -817.63 -2.71 -21.40 16 9 C 0.11 3.10 5.13 86.50 0.44 3.54 16 10 C -0.10 -3.35 3.71 -9.28 -0.03 -3.39 16 11 H 0.09 3.10 7.93 -2.38 -0.02 3.08 16 12 C 0.15 6.47 4.62 86.52 0.40 6.87 16 13 N -0.62 -30.41 3.30 -687.67 -2.27 -32.68 16 14 C -0.33 -18.21 10.26 84.03 0.86 -17.35 16 15 H 0.06 3.50 7.93 -2.91 -0.02 3.47 16 16 C -0.08 -4.40 5.19 84.86 0.44 -3.96 16 17 N -0.95 -56.80 12.56 21.65 0.27 -56.53 16 18 Si 1.12 49.99 29.98 68.60 2.06 52.04 16 19 H -0.29 -13.35 7.11 99.48 0.71 -12.64 16 20 H -0.28 -11.83 7.11 99.48 0.71 -11.12 16 21 H -0.28 -11.61 7.11 99.48 0.71 -10.91 16 22 C 0.14 5.42 6.39 86.39 0.55 5.98 16 23 C -0.07 -2.41 1.10 -50.35 -0.06 -2.46 16 24 C -0.11 -3.33 8.64 71.98 0.62 -2.70 16 25 C 0.12 3.72 6.29 86.94 0.55 4.27 16 26 S 0.23 4.77 18.74 -56.49 -1.06 3.71 16 27 H 0.09 0.79 8.14 -2.39 -0.02 0.77 16 28 H 0.08 0.77 8.14 -2.39 -0.02 0.75 16 29 H 0.10 0.70 8.14 -2.39 -0.02 0.68 16 30 H 0.17 1.94 8.06 -2.91 -0.02 1.92 16 31 H 0.15 3.29 8.06 -2.91 -0.02 3.27 16 32 H 0.08 2.34 7.11 -2.39 -0.02 2.32 16 33 H 0.09 2.39 5.24 -14.41 -0.08 2.31 16 34 H 0.02 0.92 6.91 -2.39 -0.02 0.90 16 35 H 0.04 2.20 6.82 -2.39 -0.02 2.19 16 36 H 0.26 15.35 6.08 -92.71 -0.56 14.78 16 37 H 0.05 2.12 7.92 -2.39 -0.02 2.10 16 38 H 0.03 1.07 7.18 -2.39 -0.02 1.06 16 39 H 0.05 1.66 8.14 -2.38 -0.02 1.64 16 40 H 0.07 1.83 8.14 -2.39 -0.02 1.81 16 41 H 0.06 1.63 8.14 -2.39 -0.02 1.61 16 42 H 0.07 2.23 7.15 -2.39 -0.02 2.21 16 43 H 0.08 2.51 7.59 -2.39 -0.02 2.49 16 Total: -1.00 -69.12 351.20 3.29 -65.83 By element: Atomic # 1 Polarization: 13.54 SS G_CDS: 1.16 Total: 14.70 kcal Atomic # 6 Polarization: -9.88 SS G_CDS: 5.92 Total: -3.96 kcal Atomic # 7 Polarization: -105.90 SS G_CDS: -4.71 Total: -110.61 kcal Atomic # 8 Polarization: -21.63 SS G_CDS: -0.07 Total: -21.70 kcal Atomic # 14 Polarization: 49.99 SS G_CDS: 2.06 Total: 52.04 kcal Atomic # 16 Polarization: 4.77 SS G_CDS: -1.06 Total: 3.71 kcal Total: -69.12 3.29 -65.83 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001091441668.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 77.174 kcal (2) G-P(sol) polarization free energy of solvation -69.119 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 8.055 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.292 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.827 kcal (6) G-S(sol) free energy of system = (1) + (5) 11.347 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds