Wall clock time and date at job start Tue Mar 31 2020 12:20:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.32774 * 123.46220 * 2 1 4 4 S 1.75498 * 110.57741 * 180.25062 * 3 2 1 5 5 C 1.70451 * 92.44681 * 359.73543 * 4 3 2 6 6 C 1.36008 * 110.81344 * 0.02562 * 5 4 3 7 7 C 1.47191 * 123.45631 * 179.97438 * 6 5 4 8 8 O 1.21642 * 119.99499 * 154.81877 * 7 6 5 9 9 N 1.34772 * 120.00468 * 334.81670 * 7 6 5 10 10 C 1.47195 * 126.70071 * 354.30463 * 9 7 6 11 11 C 1.53745 * 106.42772 * 211.39969 * 10 9 7 12 12 H 1.09000 * 112.28331 * 104.36030 * 11 10 9 13 13 C 1.54450 * 109.01383 * 229.45698 * 11 10 9 14 14 N 1.48327 * 104.32532 * 137.92750 * 13 11 10 15 15 C 1.36939 * 128.20100 * 138.17361 * 14 13 11 16 16 H 1.08001 * 120.00152 * 185.53571 * 15 14 13 17 17 C 1.38814 * 119.99822 * 5.53361 * 15 14 13 18 18 N 1.31614 * 119.99815 * 34.73606 * 17 15 14 19 19 Si 1.86798 * 120.00145 * 214.74056 * 17 15 14 20 20 H 1.48498 * 109.47306 * 180.02562 * 19 17 15 21 21 H 1.48498 * 109.47192 * 59.99745 * 19 17 15 22 22 H 1.48499 * 109.46894 * 300.00130 * 19 17 15 23 23 C 1.48338 * 103.60257 * 318.43337 * 14 13 11 24 24 C 1.54058 * 104.51468 * 41.53385 * 23 14 13 25 25 C 1.52999 * 112.58112 * 97.44053 * 24 23 14 26 26 C 1.47190 * 126.70567 * 174.34236 * 9 7 6 27 27 H 1.08996 * 109.46799 * 270.21609 * 1 2 3 28 28 H 1.09003 * 109.46781 * 30.21792 * 1 2 3 29 29 H 1.09007 * 109.46886 * 150.21062 * 1 2 3 30 30 H 1.07995 * 124.70640 * 359.97438 * 3 2 1 31 31 H 1.08000 * 124.59352 * 180.02562 * 5 4 3 32 32 H 1.08996 * 110.06523 * 92.16246 * 10 9 7 33 33 H 1.08994 * 110.06583 * 330.64288 * 10 9 7 34 34 H 1.08997 * 110.46276 * 19.21452 * 13 11 10 35 35 H 1.09007 * 110.46237 * 256.64172 * 13 11 10 36 36 H 0.97000 * 120.00795 * 355.22673 * 18 17 15 37 37 H 1.08996 * 110.45940 * 160.27751 * 23 14 13 38 38 H 1.08999 * 110.46141 * 282.85669 * 23 14 13 39 39 H 1.08999 * 109.46786 * 302.10876 * 25 24 23 40 40 H 1.08999 * 109.47454 * 62.10594 * 25 24 23 41 41 H 1.09004 * 109.47247 * 182.10978 * 25 24 23 42 42 H 1.09001 * 110.06653 * 267.83762 * 26 9 7 43 43 H 1.09000 * 110.06864 * 29.29722 * 26 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2391 1.1077 0.0000 4 16 3.9499 0.7163 -0.0072 5 6 3.6411 -0.9600 -0.0022 6 6 2.3033 -1.2049 0.0040 7 6 1.7262 -2.5590 0.0088 8 8 0.6127 -2.7439 0.4622 9 7 2.4315 -3.5939 -0.4891 10 6 3.7320 -3.5233 -1.1749 11 6 3.7490 -4.6739 -2.1945 12 1 3.5956 -4.3238 -3.2153 13 6 5.0659 -5.4655 -2.0381 14 7 4.6544 -6.8867 -2.1423 15 6 5.2805 -7.9026 -2.8141 16 1 4.8158 -8.8755 -2.8767 17 6 6.5125 -7.6818 -3.4145 18 7 7.3810 -6.8670 -2.8542 19 14 6.9375 -8.5411 -5.0177 20 1 8.3012 -8.1403 -5.4478 21 1 5.9550 -8.1547 -6.0621 22 1 6.8943 -10.0119 -4.8175 23 6 3.4006 -6.9457 -1.3519 24 6 2.6422 -5.6604 -1.7343 25 6 1.5876 -5.9004 -2.8164 26 6 2.0515 -5.0155 -0.4540 27 1 -0.3633 0.0039 1.0276 28 1 -0.3633 0.8881 -0.5172 29 1 -0.3633 -0.8919 -0.5106 30 1 1.8375 2.1102 -0.0004 31 1 4.4043 -1.7241 -0.0038 32 1 4.5414 -3.6491 -0.4557 33 1 3.8327 -2.5671 -1.6883 34 1 5.5152 -5.2692 -1.0646 35 1 5.7612 -5.2104 -2.8380 36 1 7.1352 -6.3676 -2.0598 37 1 2.8187 -7.8258 -1.6255 38 1 3.6227 -6.9513 -0.2848 39 1 2.0649 -6.3197 -3.7022 40 1 0.8369 -6.5974 -2.4440 41 1 1.1098 -4.9552 -3.0742 42 1 2.4662 -5.4917 0.4344 43 1 0.9658 -5.1126 -0.4576 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001091575604.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:20:44 Heat of formation + Delta-G solvation = 32.367885 kcal Electronic energy + Delta-G solvation = -25310.520866 eV Core-core repulsion = 21869.187109 eV Total energy + Delta-G solvation = -3441.333756 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 320.130 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -40.56075 -38.90191 -37.08371 -35.28046 -33.11247 -31.37610 -30.83948 -29.89299 -28.00874 -26.60132 -25.84729 -25.23734 -24.05296 -22.28264 -20.73504 -20.27151 -18.88266 -18.34501 -17.61061 -17.43829 -16.68005 -15.76874 -15.29903 -14.65799 -14.57352 -14.19758 -13.95164 -13.80686 -13.55333 -13.41466 -13.36776 -12.83131 -12.77028 -12.63093 -12.36831 -12.25141 -12.02131 -11.89956 -11.73967 -11.38306 -11.12157 -10.93589 -10.75760 -10.44646 -10.31565 -10.17262 -10.15880 -9.98648 -9.84087 -9.59928 -9.06035 -8.68800 -8.44979 -8.36573 -7.12128 -6.27913 -3.09576 0.63975 1.37635 1.73307 1.88185 2.98556 3.26273 3.45812 3.51045 3.68195 4.44937 4.50572 4.54303 4.73687 4.87878 5.00289 5.08228 5.17452 5.30823 5.31504 5.34917 5.44715 5.47081 5.54987 5.56754 5.60611 5.77430 5.81581 5.86063 5.90599 6.00723 6.06078 6.15611 6.17602 6.28123 6.34187 6.42678 6.53536 6.57284 6.72553 6.83832 6.90861 7.59361 7.61170 8.18584 8.39186 8.88323 9.74841 10.36658 11.13844 Molecular weight = 320.13amu Principal moments of inertia in cm(-1) A = 0.019609 B = 0.003497 C = 0.003121 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1427.603652 B = 8004.831518 C = 8970.272518 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.091 4.091 2 C -0.053 4.053 3 C -0.246 4.246 4 S 0.179 5.821 5 C -0.210 4.210 6 C -0.148 4.148 7 C 0.593 3.407 8 O -0.540 6.540 9 N -0.607 5.607 10 C 0.102 3.898 11 C -0.111 4.111 12 H 0.087 0.913 13 C 0.138 3.862 14 N -0.597 5.597 15 C -0.342 4.342 16 H 0.073 0.927 17 C -0.024 4.024 18 N -0.912 5.912 19 Si 1.065 2.935 20 H -0.286 1.286 21 H -0.294 1.294 22 H -0.293 1.293 23 C 0.141 3.859 24 C -0.083 4.083 25 C -0.120 4.120 26 C 0.117 3.883 27 H 0.074 0.926 28 H 0.063 0.937 29 H 0.077 0.923 30 H 0.167 0.833 31 H 0.177 0.823 32 H 0.072 0.928 33 H 0.076 0.924 34 H 0.024 0.976 35 H 0.074 0.926 36 H 0.268 0.732 37 H 0.053 0.947 38 H 0.025 0.975 39 H 0.066 0.934 40 H 0.052 0.948 41 H 0.047 0.953 42 H 0.070 0.930 43 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.555 15.276 4.599 18.596 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.064 4.064 3 C -0.381 4.381 4 S 0.446 5.554 5 C -0.348 4.348 6 C -0.166 4.166 7 C 0.381 3.619 8 O -0.419 6.419 9 N -0.339 5.339 10 C -0.021 4.021 11 C -0.132 4.132 12 H 0.105 0.895 13 C 0.011 3.989 14 N -0.322 5.322 15 C -0.468 4.468 16 H 0.091 0.909 17 C -0.226 4.226 18 N -0.553 5.553 19 Si 0.895 3.105 20 H -0.212 1.212 21 H -0.221 1.221 22 H -0.220 1.220 23 C 0.014 3.986 24 C -0.086 4.086 25 C -0.177 4.177 26 C -0.006 4.006 27 H 0.093 0.907 28 H 0.082 0.918 29 H 0.096 0.904 30 H 0.185 0.815 31 H 0.194 0.806 32 H 0.090 0.910 33 H 0.094 0.906 34 H 0.042 0.958 35 H 0.092 0.908 36 H 0.079 0.921 37 H 0.072 0.928 38 H 0.043 0.957 39 H 0.085 0.915 40 H 0.072 0.928 41 H 0.066 0.934 42 H 0.088 0.912 43 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges -7.544 15.741 3.672 17.838 hybrid contribution -2.296 -0.704 1.236 2.701 sum -9.840 15.036 4.908 18.628 Atomic orbital electron populations 1.20499 0.88772 1.02811 1.02911 1.19828 0.97396 0.89887 0.99336 1.25271 0.96507 1.02480 1.13845 1.83036 1.05533 0.97054 1.69770 1.26014 1.00027 1.02776 1.05987 1.20121 0.92203 0.94077 1.10161 1.17212 0.84161 0.82689 0.77839 1.90764 1.18783 1.84669 1.47680 1.48426 1.21669 1.06980 1.56842 1.22511 0.84890 0.99942 0.94802 1.23125 0.98178 0.93805 0.98055 0.89496 1.21868 0.92922 0.84952 0.99179 1.45207 1.24328 1.04384 1.58244 1.19703 1.04837 0.92159 1.30129 0.90944 1.25683 0.91160 1.02507 1.03258 1.70866 1.31692 1.30922 1.21833 0.83467 0.75819 0.75079 0.76105 1.21151 1.22147 1.22013 1.21706 0.88594 0.94204 0.94061 1.22522 0.95187 0.97001 0.93899 1.21565 0.97155 1.00651 0.98316 1.22428 1.00822 0.79444 0.97869 0.90719 0.91820 0.90397 0.81508 0.80605 0.90993 0.90552 0.95838 0.90805 0.92073 0.92829 0.95729 0.91543 0.92850 0.93376 0.91156 0.90401 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -0.99 9.37 36.01 0.34 -0.65 16 2 C -0.05 -0.63 6.00 -104.06 -0.62 -1.25 16 3 C -0.25 -2.35 10.91 28.86 0.31 -2.04 16 4 S 0.18 1.63 23.02 -107.50 -2.48 -0.84 16 5 C -0.21 -2.40 8.92 29.93 0.27 -2.13 16 6 C -0.15 -1.98 5.71 -104.63 -0.60 -2.58 16 7 C 0.59 9.37 7.57 -12.63 -0.10 9.27 16 8 O -0.54 -9.78 15.22 5.24 0.08 -9.70 16 9 N -0.61 -9.23 3.32 -172.20 -0.57 -9.80 16 10 C 0.10 1.46 4.75 -3.28 -0.02 1.44 16 11 C -0.11 -1.89 3.71 -88.28 -0.33 -2.22 16 12 H 0.09 1.49 7.93 -51.93 -0.41 1.08 16 13 C 0.14 2.93 4.75 -2.28 -0.01 2.92 16 14 N -0.60 -14.36 3.35 -168.72 -0.57 -14.93 16 15 C -0.34 -9.32 10.17 -15.06 -0.15 -9.47 16 16 H 0.07 1.98 8.02 -52.49 -0.42 1.56 16 17 C -0.02 -0.68 5.02 -17.43 -0.09 -0.77 16 18 N -0.91 -26.58 12.75 55.49 0.71 -25.87 16 19 Si 1.07 24.74 30.03 -169.99 -5.11 19.64 16 20 H -0.29 -6.74 7.11 56.52 0.40 -6.34 16 21 H -0.29 -6.61 7.11 56.52 0.40 -6.21 16 22 H -0.29 -6.54 7.11 56.52 0.40 -6.14 16 23 C 0.14 2.79 6.39 -2.48 -0.02 2.77 16 24 C -0.08 -1.39 1.10 -151.69 -0.17 -1.55 16 25 C -0.12 -1.84 8.64 37.16 0.32 -1.52 16 26 C 0.12 1.81 6.29 -2.58 -0.02 1.79 16 27 H 0.07 0.79 8.14 -51.93 -0.42 0.37 16 28 H 0.06 0.53 8.13 -51.93 -0.42 0.11 16 29 H 0.08 0.99 6.80 -51.93 -0.35 0.64 16 30 H 0.17 1.16 8.06 -52.49 -0.42 0.74 16 31 H 0.18 1.88 5.63 -52.49 -0.30 1.59 16 32 H 0.07 1.01 6.51 -51.93 -0.34 0.67 16 33 H 0.08 0.98 6.39 -51.93 -0.33 0.65 16 34 H 0.02 0.51 7.10 -51.93 -0.37 0.14 16 35 H 0.07 1.77 6.60 -51.93 -0.34 1.42 16 36 H 0.27 7.73 6.26 -40.82 -0.26 7.47 16 37 H 0.05 1.05 7.92 -51.93 -0.41 0.63 16 38 H 0.03 0.49 7.18 -51.93 -0.37 0.12 16 39 H 0.07 1.12 8.14 -51.93 -0.42 0.70 16 40 H 0.05 0.74 8.14 -51.93 -0.42 0.32 16 41 H 0.05 0.70 8.14 -51.93 -0.42 0.28 16 42 H 0.07 1.08 7.15 -51.93 -0.37 0.71 16 43 H 0.08 1.20 7.59 -51.93 -0.39 0.81 16 LS Contribution 348.17 15.07 5.25 5.25 Total: -1.00 -31.37 348.17 -9.55 -40.93 By element: Atomic # 1 Polarization: 7.31 SS G_CDS: -6.00 Total: 1.31 kcal Atomic # 6 Polarization: -5.10 SS G_CDS: -0.87 Total: -5.97 kcal Atomic # 7 Polarization: -50.17 SS G_CDS: -0.43 Total: -50.60 kcal Atomic # 8 Polarization: -9.78 SS G_CDS: 0.08 Total: -9.70 kcal Atomic # 14 Polarization: 24.74 SS G_CDS: -5.11 Total: 19.64 kcal Atomic # 16 Polarization: 1.63 SS G_CDS: -2.48 Total: -0.84 kcal Total LS contribution 5.25 Total: 5.25 kcal Total: -31.37 -9.55 -40.93 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001091575604.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 73.294 kcal (2) G-P(sol) polarization free energy of solvation -31.373 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 41.921 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.553 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.927 kcal (6) G-S(sol) free energy of system = (1) + (5) 32.368 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds