Wall clock time and date at job start Tue Mar 31 2020 12:20:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.32774 * 123.46220 * 2 1 4 4 S 1.75498 * 110.57741 * 180.25062 * 3 2 1 5 5 C 1.70451 * 92.44681 * 359.73543 * 4 3 2 6 6 C 1.36008 * 110.81344 * 0.02562 * 5 4 3 7 7 C 1.47191 * 123.45631 * 179.97438 * 6 5 4 8 8 O 1.21642 * 119.99499 * 154.81877 * 7 6 5 9 9 N 1.34772 * 120.00468 * 334.81670 * 7 6 5 10 10 C 1.47195 * 126.70071 * 354.30463 * 9 7 6 11 11 C 1.53745 * 106.42772 * 211.39969 * 10 9 7 12 12 H 1.09000 * 112.28331 * 104.36030 * 11 10 9 13 13 C 1.54450 * 109.01383 * 229.45698 * 11 10 9 14 14 N 1.48327 * 104.32532 * 137.92750 * 13 11 10 15 15 C 1.36939 * 128.20100 * 138.17361 * 14 13 11 16 16 H 1.08001 * 120.00152 * 185.53571 * 15 14 13 17 17 C 1.38814 * 119.99822 * 5.53361 * 15 14 13 18 18 N 1.31614 * 119.99815 * 34.73606 * 17 15 14 19 19 Si 1.86798 * 120.00145 * 214.74056 * 17 15 14 20 20 H 1.48498 * 109.47306 * 180.02562 * 19 17 15 21 21 H 1.48498 * 109.47192 * 59.99745 * 19 17 15 22 22 H 1.48499 * 109.46894 * 300.00130 * 19 17 15 23 23 C 1.48338 * 103.60257 * 318.43337 * 14 13 11 24 24 C 1.54058 * 104.51468 * 41.53385 * 23 14 13 25 25 C 1.52999 * 112.58112 * 97.44053 * 24 23 14 26 26 C 1.47190 * 126.70567 * 174.34236 * 9 7 6 27 27 H 1.08996 * 109.46799 * 270.21609 * 1 2 3 28 28 H 1.09003 * 109.46781 * 30.21792 * 1 2 3 29 29 H 1.09007 * 109.46886 * 150.21062 * 1 2 3 30 30 H 1.07995 * 124.70640 * 359.97438 * 3 2 1 31 31 H 1.08000 * 124.59352 * 180.02562 * 5 4 3 32 32 H 1.08996 * 110.06523 * 92.16246 * 10 9 7 33 33 H 1.08994 * 110.06583 * 330.64288 * 10 9 7 34 34 H 1.08997 * 110.46276 * 19.21452 * 13 11 10 35 35 H 1.09007 * 110.46237 * 256.64172 * 13 11 10 36 36 H 0.97000 * 120.00795 * 355.22673 * 18 17 15 37 37 H 1.08996 * 110.45940 * 160.27751 * 23 14 13 38 38 H 1.08999 * 110.46141 * 282.85669 * 23 14 13 39 39 H 1.08999 * 109.46786 * 302.10876 * 25 24 23 40 40 H 1.08999 * 109.47454 * 62.10594 * 25 24 23 41 41 H 1.09004 * 109.47247 * 182.10978 * 25 24 23 42 42 H 1.09001 * 110.06653 * 267.83762 * 26 9 7 43 43 H 1.09000 * 110.06864 * 29.29722 * 26 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2391 1.1077 0.0000 4 16 3.9499 0.7163 -0.0072 5 6 3.6411 -0.9600 -0.0022 6 6 2.3033 -1.2049 0.0040 7 6 1.7262 -2.5590 0.0088 8 8 0.6127 -2.7439 0.4622 9 7 2.4315 -3.5939 -0.4891 10 6 3.7320 -3.5233 -1.1749 11 6 3.7490 -4.6739 -2.1945 12 1 3.5956 -4.3238 -3.2153 13 6 5.0659 -5.4655 -2.0381 14 7 4.6544 -6.8867 -2.1423 15 6 5.2805 -7.9026 -2.8141 16 1 4.8158 -8.8755 -2.8767 17 6 6.5125 -7.6818 -3.4145 18 7 7.3810 -6.8670 -2.8542 19 14 6.9375 -8.5411 -5.0177 20 1 8.3012 -8.1403 -5.4478 21 1 5.9550 -8.1547 -6.0621 22 1 6.8943 -10.0119 -4.8175 23 6 3.4006 -6.9457 -1.3519 24 6 2.6422 -5.6604 -1.7343 25 6 1.5876 -5.9004 -2.8164 26 6 2.0515 -5.0155 -0.4540 27 1 -0.3633 0.0039 1.0276 28 1 -0.3633 0.8881 -0.5172 29 1 -0.3633 -0.8919 -0.5106 30 1 1.8375 2.1102 -0.0004 31 1 4.4043 -1.7241 -0.0038 32 1 4.5414 -3.6491 -0.4557 33 1 3.8327 -2.5671 -1.6883 34 1 5.5152 -5.2692 -1.0646 35 1 5.7612 -5.2104 -2.8380 36 1 7.1352 -6.3676 -2.0598 37 1 2.8187 -7.8258 -1.6255 38 1 3.6227 -6.9513 -0.2848 39 1 2.0649 -6.3197 -3.7022 40 1 0.8369 -6.5974 -2.4440 41 1 1.1098 -4.9552 -3.0742 42 1 2.4662 -5.4917 0.4344 43 1 0.9658 -5.1126 -0.4576 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001091575604.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:20:44 Heat of formation + Delta-G solvation = 14.526303 kcal Electronic energy + Delta-G solvation = -25311.294535 eV Core-core repulsion = 21869.187109 eV Total energy + Delta-G solvation = -3442.107425 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 320.130 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -41.83609 -40.16176 -38.10066 -36.84771 -34.73066 -32.75079 -32.03812 -31.47215 -28.90634 -27.89560 -27.42968 -26.76539 -25.27960 -23.65091 -22.27558 -21.47133 -20.26324 -19.46218 -19.29018 -18.48734 -17.85229 -16.98952 -16.51982 -16.19779 -15.94680 -15.69569 -15.51522 -15.14535 -14.94023 -14.56530 -14.40685 -14.15769 -13.99136 -13.72819 -13.59631 -13.30028 -13.15921 -13.03401 -12.95006 -12.79199 -12.55033 -12.41734 -12.29130 -11.92230 -11.90545 -11.70521 -11.67106 -11.58471 -11.55989 -10.96935 -10.40915 -9.90449 -9.85069 -9.26691 -9.08994 -8.44449 -5.20323 -0.23277 0.60439 0.90615 0.99500 1.58506 1.66098 1.82026 1.85255 2.15488 2.61352 3.16283 3.21742 3.30387 3.66522 3.70846 3.81122 3.85771 4.02514 4.08631 4.18128 4.19557 4.34976 4.36927 4.53272 4.58995 4.62563 4.65980 4.70111 4.75584 4.79927 4.82658 4.90557 4.93036 4.99729 5.04109 5.15213 5.20404 5.24861 5.30665 5.35722 5.48706 5.63932 6.29725 6.39402 6.82473 6.99620 7.70105 8.37294 8.99590 Molecular weight = 320.13amu Principal moments of inertia in cm(-1) A = 0.019609 B = 0.003497 C = 0.003121 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1427.603652 B = 8004.831518 C = 8970.272518 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.087 4.087 2 C -0.079 4.079 3 C -0.237 4.237 4 S 0.238 5.762 5 C -0.219 4.219 6 C -0.175 4.175 7 C 0.591 3.409 8 O -0.570 6.570 9 N -0.607 5.607 10 C 0.112 3.888 11 C -0.102 4.102 12 H 0.089 0.911 13 C 0.144 3.856 14 N -0.623 5.623 15 C -0.348 4.348 16 H 0.065 0.935 17 C -0.075 4.075 18 N -0.940 5.940 19 Si 1.114 2.886 20 H -0.292 1.292 21 H -0.282 1.282 22 H -0.277 1.277 23 C 0.140 3.860 24 C -0.073 4.073 25 C -0.113 4.113 26 C 0.122 3.878 27 H 0.071 0.929 28 H 0.088 0.912 29 H 0.052 0.948 30 H 0.197 0.803 31 H 0.179 0.821 32 H 0.077 0.923 33 H 0.096 0.904 34 H 0.020 0.980 35 H 0.042 0.958 36 H 0.257 0.743 37 H 0.052 0.948 38 H 0.026 0.974 39 H 0.049 0.951 40 H 0.068 0.932 41 H 0.059 0.941 42 H 0.071 0.929 43 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.116 17.255 4.349 20.469 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.090 4.090 3 C -0.372 4.372 4 S 0.506 5.494 5 C -0.358 4.358 6 C -0.194 4.194 7 C 0.381 3.619 8 O -0.451 6.451 9 N -0.339 5.339 10 C -0.011 4.011 11 C -0.123 4.123 12 H 0.107 0.893 13 C 0.018 3.982 14 N -0.348 5.348 15 C -0.475 4.475 16 H 0.083 0.917 17 C -0.271 4.271 18 N -0.583 5.583 19 Si 0.939 3.061 20 H -0.218 1.218 21 H -0.209 1.209 22 H -0.203 1.203 23 C 0.014 3.986 24 C -0.076 4.076 25 C -0.171 4.171 26 C -0.001 4.001 27 H 0.089 0.911 28 H 0.107 0.893 29 H 0.071 0.929 30 H 0.214 0.786 31 H 0.197 0.803 32 H 0.095 0.905 33 H 0.114 0.886 34 H 0.038 0.962 35 H 0.061 0.939 36 H 0.068 0.932 37 H 0.071 0.929 38 H 0.044 0.956 39 H 0.068 0.932 40 H 0.087 0.913 41 H 0.078 0.922 42 H 0.089 0.911 43 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges -8.132 17.731 3.440 19.808 hybrid contribution -2.097 -1.270 1.392 2.819 sum -10.229 16.461 4.831 19.974 Atomic orbital electron populations 1.20450 0.88646 1.02761 1.02712 1.19943 0.97837 0.90034 1.01165 1.25654 0.96831 1.03177 1.11498 1.82899 1.04561 0.94379 1.67554 1.26177 0.99424 1.04861 1.05305 1.20083 0.93204 0.93239 1.12844 1.17636 0.83740 0.83537 0.77029 1.90739 1.20127 1.85241 1.49037 1.48416 1.21793 1.06761 1.56934 1.22415 0.84759 0.99627 0.94274 1.22978 0.95779 0.94383 0.99132 0.89311 1.21791 0.94304 0.84399 0.97690 1.45436 1.25524 1.04899 1.58988 1.19921 1.04762 0.92826 1.30016 0.91711 1.26935 0.91490 1.03220 1.05424 1.70970 1.32508 1.32561 1.22290 0.82819 0.75358 0.75070 0.72805 1.21810 1.20853 1.20335 1.21838 0.87329 0.95877 0.93550 1.22390 0.95094 0.95219 0.94888 1.21511 0.96923 1.01571 0.97066 1.22309 1.00866 0.79866 0.97028 0.91070 0.89300 0.92917 0.78615 0.80332 0.90452 0.88554 0.96207 0.93915 0.93248 0.92906 0.95591 0.93234 0.91275 0.92226 0.91133 0.90104 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -1.78 9.37 71.24 0.67 -1.12 16 2 C -0.08 -1.73 6.00 -19.46 -0.12 -1.84 16 3 C -0.24 -3.73 10.91 66.64 0.73 -3.01 16 4 S 0.24 3.56 23.02 -56.49 -1.30 2.25 16 5 C -0.22 -4.54 8.92 67.30 0.60 -3.94 16 6 C -0.18 -4.46 5.71 -19.87 -0.11 -4.57 16 7 C 0.59 18.28 7.57 86.60 0.66 18.94 16 8 O -0.57 -20.66 15.22 -4.16 -0.06 -20.72 16 9 N -0.61 -17.89 3.32 -816.95 -2.71 -20.60 16 10 C 0.11 3.09 4.75 86.50 0.41 3.50 16 11 C -0.10 -3.43 3.71 -9.28 -0.03 -3.46 16 12 H 0.09 2.98 7.93 -2.39 -0.02 2.96 16 13 C 0.14 6.28 4.75 86.52 0.41 6.69 16 14 N -0.62 -30.50 3.35 -687.70 -2.30 -32.80 16 15 C -0.35 -19.28 10.17 84.03 0.85 -18.43 16 16 H 0.07 3.60 8.02 -2.91 -0.02 3.57 16 17 C -0.07 -4.17 5.02 84.86 0.43 -3.75 16 18 N -0.94 -56.07 12.75 21.65 0.28 -55.79 16 19 Si 1.11 50.30 30.03 68.60 2.06 52.36 16 20 H -0.29 -13.38 7.11 99.48 0.71 -12.67 16 21 H -0.28 -12.06 7.11 99.48 0.71 -11.35 16 22 H -0.28 -11.71 7.11 99.48 0.71 -11.01 16 23 C 0.14 5.53 6.39 86.38 0.55 6.08 16 24 C -0.07 -2.39 1.10 -50.35 -0.06 -2.45 16 25 C -0.11 -3.36 8.64 71.98 0.62 -2.74 16 26 C 0.12 3.68 6.29 86.95 0.55 4.23 16 27 H 0.07 1.46 8.14 -2.39 -0.02 1.44 16 28 H 0.09 1.29 8.13 -2.39 -0.02 1.27 16 29 H 0.05 1.34 6.80 -2.38 -0.02 1.32 16 30 H 0.20 1.85 8.06 -2.91 -0.02 1.82 16 31 H 0.18 3.48 5.63 -2.91 -0.02 3.47 16 32 H 0.08 2.08 6.51 -2.39 -0.02 2.07 16 33 H 0.10 2.30 6.39 -2.39 -0.02 2.29 16 34 H 0.02 0.88 7.10 -2.39 -0.02 0.86 16 35 H 0.04 2.11 6.60 -2.38 -0.02 2.09 16 36 H 0.26 15.34 6.26 -92.71 -0.58 14.76 16 37 H 0.05 2.06 7.92 -2.39 -0.02 2.04 16 38 H 0.03 1.03 7.18 -2.39 -0.02 1.01 16 39 H 0.05 1.64 8.14 -2.39 -0.02 1.62 16 40 H 0.07 1.82 8.14 -2.39 -0.02 1.80 16 41 H 0.06 1.63 8.14 -2.39 -0.02 1.62 16 42 H 0.07 2.13 7.15 -2.39 -0.02 2.11 16 43 H 0.08 2.41 7.59 -2.39 -0.02 2.40 16 Total: -1.00 -69.01 348.17 3.32 -65.68 By element: Atomic # 1 Polarization: 14.28 SS G_CDS: 1.21 Total: 15.49 kcal Atomic # 6 Polarization: -12.03 SS G_CDS: 6.15 Total: -5.87 kcal Atomic # 7 Polarization: -104.45 SS G_CDS: -4.74 Total: -109.19 kcal Atomic # 8 Polarization: -20.66 SS G_CDS: -0.06 Total: -20.72 kcal Atomic # 14 Polarization: 50.30 SS G_CDS: 2.06 Total: 52.36 kcal Atomic # 16 Polarization: 3.56 SS G_CDS: -1.30 Total: 2.25 kcal Total: -69.01 3.32 -65.68 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001091575604.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 80.210 kcal (2) G-P(sol) polarization free energy of solvation -69.005 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 11.205 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.321 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.684 kcal (6) G-S(sol) free energy of system = (1) + (5) 14.526 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds