Wall clock time and date at job start Tue Mar 31 2020 12:16:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.33817 * 124.52021 * 2 1 4 4 C 1.37475 * 115.09784 * 179.72784 * 3 2 1 5 5 C 1.50705 * 123.34942 * 180.25342 * 4 3 2 6 6 C 1.36646 * 113.30005 * 0.27230 * 4 3 2 7 7 C 1.46580 * 125.46076 * 179.97438 * 6 4 3 8 8 O 1.21704 * 119.99725 * 359.97438 * 7 6 4 9 9 N 1.34773 * 120.00171 * 180.02562 * 7 6 4 10 10 C 1.46502 * 120.00108 * 180.02562 * 9 7 6 11 11 H 1.09002 * 110.56103 * 33.09457 * 10 9 7 12 12 C 1.54849 * 110.62720 * 155.99790 * 10 9 7 13 13 C 1.55849 * 103.44514 * 118.48684 * 12 10 9 14 14 H 1.09005 * 115.56030 * 158.81247 * 13 12 10 15 15 C 1.55841 * 105.06505 * 288.17721 * 13 12 10 16 16 C 1.54851 * 103.44682 * 71.82038 * 15 13 12 17 17 C 1.55836 * 103.44480 * 0.02562 * 16 15 13 18 18 H 1.09005 * 116.12670 * 159.14703 * 17 16 15 19 19 N 1.50233 * 101.04861 * 32.93621 * 13 12 10 20 20 C 1.36943 * 130.83628 * 126.07048 * 19 13 12 21 21 H 1.08005 * 120.00112 * 179.97438 * 20 19 13 22 22 C 1.38810 * 120.00018 * 359.96618 * 20 19 13 23 23 N 1.31617 * 120.00082 * 0.02562 * 22 20 19 24 24 Si 1.86802 * 120.00010 * 180.02562 * 22 20 19 25 25 H 1.48502 * 109.46695 * 60.00931 * 24 22 20 26 26 H 1.48496 * 109.47296 * 180.02562 * 24 22 20 27 27 H 1.48501 * 109.47256 * 300.00689 * 24 22 20 28 28 S 1.70611 * 124.52399 * 180.16514 * 2 1 3 29 29 H 1.09003 * 109.47051 * 90.00061 * 1 2 3 30 30 H 1.08999 * 109.47156 * 210.00082 * 1 2 3 31 31 H 1.08997 * 109.47166 * 330.00020 * 1 2 3 32 32 H 1.08004 * 122.45115 * 0.02562 * 3 2 1 33 33 H 1.08991 * 109.47338 * 90.02443 * 5 4 3 34 34 H 1.08996 * 109.46635 * 210.02632 * 5 4 3 35 35 H 1.08995 * 109.46978 * 330.02182 * 5 4 3 36 36 H 0.97000 * 120.00152 * 359.97438 * 9 7 6 37 37 H 1.08994 * 110.63016 * 236.97744 * 12 10 9 38 38 H 1.08999 * 110.62710 * 359.97438 * 12 10 9 39 39 H 1.08995 * 110.63002 * 190.31780 * 15 13 12 40 40 H 1.09006 * 110.62587 * 313.33449 * 15 13 12 41 41 H 1.09001 * 110.62764 * 241.50776 * 16 15 13 42 42 H 1.08998 * 110.76108 * 118.55696 * 16 15 13 43 43 H 0.96995 * 120.00058 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2653 1.1026 0.0000 4 6 3.6215 0.8775 0.0059 5 6 4.6449 1.9838 0.0125 6 6 3.9493 -0.4491 0.0048 7 6 5.3123 -0.9883 0.0096 8 8 6.2658 -0.2320 0.0146 9 7 5.5096 -2.3215 0.0074 10 6 6.8719 -2.8603 0.0127 11 1 7.5397 -2.2074 0.5748 12 6 6.8894 -4.2935 0.5989 13 6 7.4153 -5.1622 -0.5833 14 1 7.8443 -6.1249 -0.3051 15 6 6.2422 -5.2041 -1.6083 16 6 6.2247 -3.7710 -2.1944 17 6 7.3900 -3.0584 -1.4442 18 1 7.7964 -2.1681 -1.9241 19 7 8.3506 -4.1976 -1.2555 20 6 9.6720 -4.3198 -1.5934 21 1 10.1826 -3.5023 -2.0807 22 6 10.3554 -5.4942 -1.3094 23 7 9.7331 -6.4906 -0.7159 24 14 12.1581 -5.6605 -1.7697 25 1 12.9453 -4.6105 -1.0746 26 1 12.6515 -7.0006 -1.3624 27 1 12.3107 -5.5027 -3.2384 28 16 2.4739 -1.4056 -0.0041 29 1 -0.3633 0.0000 -1.0277 30 1 -0.3633 -0.8900 0.5138 31 1 -0.3633 0.8900 0.5138 32 1 1.8428 2.0965 0.0004 33 1 4.8872 2.2485 1.0416 34 1 5.5471 1.6471 -0.4981 35 1 4.2406 2.8558 -0.5014 36 1 4.7497 -2.9242 0.0030 37 1 7.5678 -4.3521 1.4499 38 1 5.8845 -4.6031 0.8861 39 1 6.4416 -5.9365 -2.3905 40 1 5.3006 -5.4248 -1.1054 41 1 5.2744 -3.2809 -1.9823 42 1 6.4142 -3.7901 -3.2676 43 1 10.2105 -7.3113 -0.5178 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001095473948.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:16:51 Heat of formation + Delta-G solvation = 37.303392 kcal Electronic energy + Delta-G solvation = -24971.696913 eV Core-core repulsion = 21530.577177 eV Total energy + Delta-G solvation = -3441.119737 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 320.130 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -40.09698 -38.90974 -37.67143 -33.95194 -32.84396 -32.32619 -29.49531 -29.08365 -28.57071 -28.02788 -26.70890 -24.17816 -22.24953 -21.88318 -21.07891 -19.60558 -19.10799 -18.37808 -17.71620 -16.97215 -16.06356 -15.41181 -15.16260 -14.83146 -14.58687 -14.42652 -14.05642 -13.82970 -13.65129 -13.18283 -13.15754 -13.07548 -12.28888 -12.25501 -11.99319 -11.80828 -11.77578 -11.71355 -11.46548 -11.04080 -10.98755 -10.90059 -10.88647 -10.81446 -10.21467 -10.11441 -9.85995 -9.64222 -9.35558 -9.24605 -8.92291 -8.81380 -8.55778 -8.43781 -6.90817 -5.71874 -3.09859 0.42545 1.34000 1.75131 2.27327 3.35348 3.41140 3.43302 3.45617 3.47901 4.46308 4.47735 4.85655 4.96183 5.08663 5.15301 5.21193 5.24162 5.38937 5.46204 5.54526 5.59627 5.70901 5.80639 5.84721 5.85508 5.94321 5.98137 6.07291 6.12778 6.26310 6.30098 6.33876 6.45223 6.55096 6.61422 6.68861 6.81871 6.96983 7.00041 7.27539 7.52869 7.72895 7.83041 8.17514 8.44573 9.11281 9.73843 10.54159 11.37746 Molecular weight = 320.13amu Principal moments of inertia in cm(-1) A = 0.027052 B = 0.003216 C = 0.002998 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1034.806794 B = 8704.693993 C = 9337.902180 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.084 4.084 2 C -0.198 4.198 3 C -0.153 4.153 4 C -0.022 4.022 5 C -0.105 4.105 6 C -0.267 4.267 7 C 0.585 3.415 8 O -0.529 6.529 9 N -0.707 5.707 10 C 0.128 3.872 11 H 0.086 0.914 12 C -0.142 4.142 13 C 0.154 3.846 14 H 0.155 0.845 15 C -0.137 4.137 16 C -0.131 4.131 17 C 0.129 3.871 18 H 0.086 0.914 19 N -0.589 5.589 20 C -0.210 4.210 21 H 0.079 0.921 22 C -0.012 4.012 23 N -0.924 5.924 24 Si 0.917 3.083 25 H -0.285 1.285 26 H -0.290 1.290 27 H -0.286 1.286 28 S 0.190 5.810 29 H 0.077 0.923 30 H 0.070 0.930 31 H 0.077 0.923 32 H 0.141 0.859 33 H 0.073 0.927 34 H 0.095 0.905 35 H 0.062 0.938 36 H 0.392 0.608 37 H 0.066 0.934 38 H 0.054 0.946 39 H 0.056 0.944 40 H 0.045 0.955 41 H 0.049 0.951 42 H 0.052 0.948 43 H 0.254 0.746 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.535 10.608 2.555 22.376 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.318 4.318 3 C -0.184 4.184 4 C -0.037 4.037 5 C -0.163 4.163 6 C -0.387 4.387 7 C 0.371 3.629 8 O -0.408 6.408 9 N -0.357 5.357 10 C 0.022 3.978 11 H 0.105 0.895 12 C -0.182 4.182 13 C 0.047 3.953 14 H 0.172 0.828 15 C -0.176 4.176 16 C -0.171 4.171 17 C 0.020 3.980 18 H 0.104 0.896 19 N -0.309 5.309 20 C -0.338 4.338 21 H 0.097 0.903 22 C -0.207 4.207 23 N -0.572 5.572 24 Si 0.748 3.252 25 H -0.212 1.212 26 H -0.216 1.216 27 H -0.213 1.213 28 S 0.459 5.541 29 H 0.095 0.905 30 H 0.089 0.911 31 H 0.096 0.904 32 H 0.159 0.841 33 H 0.092 0.908 34 H 0.114 0.886 35 H 0.081 0.919 36 H 0.226 0.774 37 H 0.085 0.915 38 H 0.072 0.928 39 H 0.074 0.926 40 H 0.063 0.937 41 H 0.068 0.932 42 H 0.070 0.930 43 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges -18.832 9.365 2.534 21.184 hybrid contribution 0.586 1.249 -0.245 1.401 sum -18.247 10.613 2.289 21.233 Atomic orbital electron populations 1.20378 0.87512 1.03366 1.03008 1.24136 1.01369 0.97937 1.08344 1.19830 0.92208 0.99482 1.06911 1.19471 0.94640 0.93526 0.96074 1.20728 0.98152 0.94488 1.02949 1.24514 0.97086 0.97369 1.19707 1.16915 0.86410 0.82696 0.76887 1.90771 1.41732 1.57678 1.50607 1.46152 1.09857 1.05651 1.74073 1.22719 0.80451 0.95102 0.99517 0.89549 1.23319 0.99593 0.94613 1.00669 1.23776 0.86584 0.96811 0.88088 0.82781 1.23043 0.98479 0.95922 1.00175 1.22908 0.97840 0.96883 0.99428 1.23195 0.89878 0.92041 0.92926 0.89606 1.46463 1.06271 1.10761 1.67450 1.19024 0.83640 0.99408 1.31763 0.90338 1.24692 0.98434 0.96161 1.01414 1.69420 1.35135 1.05347 1.47325 0.86102 0.84248 0.76826 0.78045 1.21200 1.21586 1.21267 1.82977 0.94495 1.07596 1.69038 0.90464 0.91109 0.90419 0.84090 0.90826 0.88640 0.91929 0.77405 0.91478 0.92775 0.92555 0.93663 0.93238 0.92960 0.93509 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.52 10.31 36.01 0.37 -0.15 16 2 C -0.20 -1.87 6.28 -35.86 -0.23 -2.09 16 3 C -0.15 -1.56 9.82 -41.41 -0.41 -1.97 16 4 C -0.02 -0.28 5.90 -105.47 -0.62 -0.90 16 5 C -0.10 -1.25 9.55 36.01 0.34 -0.90 16 6 C -0.27 -3.66 6.45 -36.79 -0.24 -3.89 16 7 C 0.59 9.70 7.78 -12.90 -0.10 9.60 16 8 O -0.53 -10.33 13.91 5.18 0.07 -10.26 16 9 N -0.71 -11.26 3.70 -52.70 -0.20 -11.46 16 10 C 0.13 2.45 3.14 -65.41 -0.21 2.24 16 11 H 0.09 1.84 7.58 -51.93 -0.39 1.45 16 12 C -0.14 -2.74 6.20 -24.24 -0.15 -2.89 16 13 C 0.15 3.48 4.72 -62.80 -0.30 3.18 16 14 H 0.16 3.97 5.52 -51.93 -0.29 3.68 16 15 C -0.14 -2.66 6.44 -24.24 -0.16 -2.81 16 16 C -0.13 -2.47 6.32 -24.24 -0.15 -2.62 16 17 C 0.13 2.74 5.35 -62.80 -0.34 2.40 16 18 H 0.09 1.89 8.14 -51.93 -0.42 1.47 16 19 N -0.59 -14.75 2.98 -145.82 -0.44 -15.18 16 20 C -0.21 -5.82 10.59 -15.06 -0.16 -5.98 16 21 H 0.08 2.13 7.83 -52.48 -0.41 1.72 16 22 C -0.01 -0.33 5.50 -17.43 -0.10 -0.42 16 23 N -0.92 -26.19 10.46 55.49 0.58 -25.61 16 24 Si 0.92 22.08 29.55 -169.99 -5.02 17.05 16 25 H -0.29 -6.83 7.11 56.52 0.40 -6.43 16 26 H -0.29 -7.01 7.11 56.52 0.40 -6.61 16 27 H -0.29 -6.83 7.11 56.52 0.40 -6.43 16 28 S 0.19 1.99 22.10 -107.50 -2.38 -0.38 16 29 H 0.08 0.42 8.14 -51.93 -0.42 -0.01 16 30 H 0.07 0.38 8.14 -51.93 -0.42 -0.04 16 31 H 0.08 0.39 8.14 -51.93 -0.42 -0.03 16 32 H 0.14 1.12 8.06 -52.48 -0.42 0.70 16 33 H 0.07 0.84 8.14 -51.93 -0.42 0.42 16 34 H 0.10 1.38 6.01 -51.93 -0.31 1.07 16 35 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 36 H 0.39 5.39 7.03 -40.82 -0.29 5.11 16 37 H 0.07 1.37 8.14 -51.93 -0.42 0.95 16 38 H 0.05 0.88 7.38 -51.93 -0.38 0.50 16 39 H 0.06 1.16 8.14 -51.93 -0.42 0.74 16 40 H 0.04 0.74 7.82 -51.93 -0.41 0.34 16 41 H 0.05 0.81 6.39 -51.93 -0.33 0.48 16 42 H 0.05 1.01 8.14 -51.93 -0.42 0.59 16 43 H 0.25 7.03 8.31 -40.82 -0.34 6.69 16 LS Contribution 353.59 15.07 5.33 5.33 Total: -1.00 -30.55 353.59 -10.65 -41.20 By element: Atomic # 1 Polarization: 12.69 SS G_CDS: -6.17 Total: 6.51 kcal Atomic # 6 Polarization: -4.78 SS G_CDS: -2.43 Total: -7.21 kcal Atomic # 7 Polarization: -52.20 SS G_CDS: -0.05 Total: -52.25 kcal Atomic # 8 Polarization: -10.33 SS G_CDS: 0.07 Total: -10.26 kcal Atomic # 14 Polarization: 22.08 SS G_CDS: -5.02 Total: 17.05 kcal Atomic # 16 Polarization: 1.99 SS G_CDS: -2.38 Total: -0.38 kcal Total LS contribution 5.33 Total: 5.33 kcal Total: -30.55 -10.65 -41.20 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001095473948.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 78.505 kcal (2) G-P(sol) polarization free energy of solvation -30.550 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 47.956 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.652 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.202 kcal (6) G-S(sol) free energy of system = (1) + (5) 37.303 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds