Wall clock time and date at job start Tue Mar 31 2020 12:16:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.33817 * 124.52021 * 2 1 4 4 C 1.37475 * 115.09784 * 179.72784 * 3 2 1 5 5 C 1.50705 * 123.34942 * 180.25342 * 4 3 2 6 6 C 1.36646 * 113.30005 * 0.27230 * 4 3 2 7 7 C 1.46580 * 125.46076 * 179.97438 * 6 4 3 8 8 O 1.21704 * 119.99725 * 359.97438 * 7 6 4 9 9 N 1.34773 * 120.00171 * 180.02562 * 7 6 4 10 10 C 1.46502 * 120.00108 * 180.02562 * 9 7 6 11 11 H 1.09002 * 110.56103 * 33.09457 * 10 9 7 12 12 C 1.54849 * 110.62720 * 155.99790 * 10 9 7 13 13 C 1.55849 * 103.44514 * 118.48684 * 12 10 9 14 14 H 1.09005 * 115.56030 * 158.81247 * 13 12 10 15 15 C 1.55841 * 105.06505 * 288.17721 * 13 12 10 16 16 C 1.54851 * 103.44682 * 71.82038 * 15 13 12 17 17 C 1.55836 * 103.44480 * 0.02562 * 16 15 13 18 18 H 1.09005 * 116.12670 * 159.14703 * 17 16 15 19 19 N 1.50233 * 101.04861 * 32.93621 * 13 12 10 20 20 C 1.36943 * 130.83628 * 126.07048 * 19 13 12 21 21 H 1.08005 * 120.00112 * 179.97438 * 20 19 13 22 22 C 1.38810 * 120.00018 * 359.96618 * 20 19 13 23 23 N 1.31617 * 120.00082 * 0.02562 * 22 20 19 24 24 Si 1.86802 * 120.00010 * 180.02562 * 22 20 19 25 25 H 1.48502 * 109.46695 * 60.00931 * 24 22 20 26 26 H 1.48496 * 109.47296 * 180.02562 * 24 22 20 27 27 H 1.48501 * 109.47256 * 300.00689 * 24 22 20 28 28 S 1.70611 * 124.52399 * 180.16514 * 2 1 3 29 29 H 1.09003 * 109.47051 * 90.00061 * 1 2 3 30 30 H 1.08999 * 109.47156 * 210.00082 * 1 2 3 31 31 H 1.08997 * 109.47166 * 330.00020 * 1 2 3 32 32 H 1.08004 * 122.45115 * 0.02562 * 3 2 1 33 33 H 1.08991 * 109.47338 * 90.02443 * 5 4 3 34 34 H 1.08996 * 109.46635 * 210.02632 * 5 4 3 35 35 H 1.08995 * 109.46978 * 330.02182 * 5 4 3 36 36 H 0.97000 * 120.00152 * 359.97438 * 9 7 6 37 37 H 1.08994 * 110.63016 * 236.97744 * 12 10 9 38 38 H 1.08999 * 110.62710 * 359.97438 * 12 10 9 39 39 H 1.08995 * 110.63002 * 190.31780 * 15 13 12 40 40 H 1.09006 * 110.62587 * 313.33449 * 15 13 12 41 41 H 1.09001 * 110.62764 * 241.50776 * 16 15 13 42 42 H 1.08998 * 110.76108 * 118.55696 * 16 15 13 43 43 H 0.96995 * 120.00058 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2653 1.1026 0.0000 4 6 3.6215 0.8775 0.0059 5 6 4.6449 1.9838 0.0125 6 6 3.9493 -0.4491 0.0048 7 6 5.3123 -0.9883 0.0096 8 8 6.2658 -0.2320 0.0146 9 7 5.5096 -2.3215 0.0074 10 6 6.8719 -2.8603 0.0127 11 1 7.5397 -2.2074 0.5748 12 6 6.8894 -4.2935 0.5989 13 6 7.4153 -5.1622 -0.5833 14 1 7.8443 -6.1249 -0.3051 15 6 6.2422 -5.2041 -1.6083 16 6 6.2247 -3.7710 -2.1944 17 6 7.3900 -3.0584 -1.4442 18 1 7.7964 -2.1681 -1.9241 19 7 8.3506 -4.1976 -1.2555 20 6 9.6720 -4.3198 -1.5934 21 1 10.1826 -3.5023 -2.0807 22 6 10.3554 -5.4942 -1.3094 23 7 9.7331 -6.4906 -0.7159 24 14 12.1581 -5.6605 -1.7697 25 1 12.9453 -4.6105 -1.0746 26 1 12.6515 -7.0006 -1.3624 27 1 12.3107 -5.5027 -3.2384 28 16 2.4739 -1.4056 -0.0041 29 1 -0.3633 0.0000 -1.0277 30 1 -0.3633 -0.8900 0.5138 31 1 -0.3633 0.8900 0.5138 32 1 1.8428 2.0965 0.0004 33 1 4.8872 2.2485 1.0416 34 1 5.5471 1.6471 -0.4981 35 1 4.2406 2.8558 -0.5014 36 1 4.7497 -2.9242 0.0030 37 1 7.5678 -4.3521 1.4499 38 1 5.8845 -4.6031 0.8861 39 1 6.4416 -5.9365 -2.3905 40 1 5.3006 -5.4248 -1.1054 41 1 5.2744 -3.2809 -1.9823 42 1 6.4142 -3.7901 -3.2676 43 1 10.2105 -7.3113 -0.5178 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001095473948.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:16:50 Heat of formation + Delta-G solvation = 20.459089 kcal Electronic energy + Delta-G solvation = -24972.427337 eV Core-core repulsion = 21530.577177 eV Total energy + Delta-G solvation = -3441.850160 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 320.130 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -41.55233 -40.18446 -38.77838 -35.51584 -34.25102 -33.57930 -31.05666 -30.90770 -29.87476 -29.04464 -27.89580 -26.08248 -23.32064 -22.91420 -22.52527 -21.38401 -20.41122 -19.86444 -18.83711 -18.68998 -17.12570 -16.83536 -16.70476 -16.49292 -15.97915 -15.63111 -15.50056 -14.86317 -14.78202 -14.21732 -14.04974 -13.94803 -13.88701 -13.67891 -13.49267 -13.20887 -12.88606 -12.79377 -12.78139 -12.62668 -12.57429 -12.50942 -12.42196 -12.02480 -11.93273 -11.77921 -11.59917 -11.21437 -11.05531 -10.86676 -10.79645 -10.11073 -9.55464 -9.35007 -8.87266 -7.80111 -5.19756 -0.47686 0.50500 0.92250 1.39389 1.46146 1.48648 1.54603 2.10544 2.18384 2.50166 3.33100 3.48574 3.77221 3.81152 3.96306 4.08842 4.12623 4.23048 4.29275 4.39251 4.43940 4.57041 4.57774 4.66579 4.68506 4.75620 4.76369 4.79288 4.93637 5.01451 5.03785 5.10787 5.11948 5.15973 5.21294 5.30223 5.41335 5.44795 5.51187 5.55879 5.70876 5.87405 6.25864 6.51337 7.04503 7.18753 7.67962 8.53992 9.26723 Molecular weight = 320.13amu Principal moments of inertia in cm(-1) A = 0.027052 B = 0.003216 C = 0.002998 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1034.806794 B = 8704.693993 C = 9337.902180 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.087 4.087 2 C -0.182 4.182 3 C -0.167 4.167 4 C -0.022 4.022 5 C -0.104 4.104 6 C -0.312 4.312 7 C 0.584 3.416 8 O -0.569 6.569 9 N -0.697 5.697 10 C 0.146 3.854 11 H 0.057 0.943 12 C -0.128 4.128 13 C 0.140 3.860 14 H 0.124 0.876 15 C -0.125 4.125 16 C -0.117 4.117 17 C 0.119 3.881 18 H 0.067 0.933 19 N -0.616 5.616 20 C -0.228 4.228 21 H 0.071 0.929 22 C -0.061 4.061 23 N -0.943 5.943 24 Si 0.977 3.023 25 H -0.284 1.284 26 H -0.290 1.290 27 H -0.282 1.282 28 S 0.223 5.777 29 H 0.091 0.909 30 H 0.082 0.918 31 H 0.094 0.906 32 H 0.166 0.834 33 H 0.074 0.926 34 H 0.064 0.936 35 H 0.088 0.912 36 H 0.406 0.594 37 H 0.049 0.951 38 H 0.093 0.907 39 H 0.039 0.961 40 H 0.086 0.914 41 H 0.080 0.920 42 H 0.044 0.956 43 H 0.250 0.750 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.178 11.260 2.636 25.903 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.302 4.302 3 C -0.197 4.197 4 C -0.038 4.038 5 C -0.163 4.163 6 C -0.431 4.431 7 C 0.372 3.628 8 O -0.451 6.451 9 N -0.349 5.349 10 C 0.040 3.960 11 H 0.076 0.924 12 C -0.167 4.167 13 C 0.034 3.966 14 H 0.141 0.859 15 C -0.164 4.164 16 C -0.156 4.156 17 C 0.011 3.989 18 H 0.086 0.914 19 N -0.338 5.338 20 C -0.357 4.357 21 H 0.089 0.911 22 C -0.254 4.254 23 N -0.593 5.593 24 Si 0.805 3.195 25 H -0.210 1.210 26 H -0.215 1.215 27 H -0.208 1.208 28 S 0.492 5.508 29 H 0.109 0.891 30 H 0.100 0.900 31 H 0.113 0.887 32 H 0.184 0.816 33 H 0.093 0.907 34 H 0.083 0.917 35 H 0.106 0.894 36 H 0.243 0.757 37 H 0.068 0.932 38 H 0.111 0.889 39 H 0.058 0.942 40 H 0.104 0.896 41 H 0.098 0.902 42 H 0.063 0.937 43 H 0.060 0.940 Dipole moment (debyes) X Y Z Total from point charges -22.532 10.020 2.615 24.798 hybrid contribution 1.599 1.143 -0.261 1.982 sum -20.934 11.162 2.354 23.840 Atomic orbital electron populations 1.20567 0.84854 1.04823 1.04312 1.24664 1.03043 0.97139 1.05312 1.19999 0.90999 1.01064 1.07611 1.19752 0.95934 0.93161 0.94920 1.20694 0.97171 0.95494 1.02917 1.24274 0.96830 0.98644 1.23395 1.17348 0.87469 0.82296 0.75658 1.90755 1.43557 1.58512 1.52286 1.45873 1.08758 1.05952 1.74274 1.22172 0.81800 0.94612 0.97457 0.92427 1.23155 1.01145 0.93744 0.98706 1.23702 0.87255 0.95648 0.90038 0.85900 1.22939 0.98880 0.95636 0.98980 1.22802 0.97937 0.96358 0.98541 1.23313 0.90146 0.90858 0.94559 0.91445 1.46706 1.06181 1.12724 1.68199 1.19271 0.85394 0.99366 1.31625 0.91107 1.25410 1.01986 0.96050 1.01973 1.69646 1.36052 1.05391 1.48172 0.85177 0.80016 0.76502 0.77765 1.21002 1.21537 1.20801 1.82773 0.92414 1.07286 1.68360 0.89055 0.89960 0.88713 0.81642 0.90728 0.91711 0.89358 0.75702 0.93240 0.88851 0.94238 0.89564 0.90162 0.93684 0.94044 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -0.67 10.31 71.24 0.73 0.07 16 2 C -0.18 -2.71 6.28 24.68 0.15 -2.55 16 3 C -0.17 -2.86 9.82 21.08 0.21 -2.65 16 4 C -0.02 -0.52 5.90 -20.42 -0.12 -0.64 16 5 C -0.10 -2.44 9.55 71.24 0.68 -1.76 16 6 C -0.31 -8.13 6.45 24.07 0.16 -7.97 16 7 C 0.58 19.31 7.78 86.42 0.67 19.99 16 8 O -0.57 -23.14 13.91 -4.36 -0.06 -23.20 16 9 N -0.70 -21.49 3.70 -438.86 -1.62 -23.11 16 10 C 0.15 5.67 3.14 46.63 0.15 5.81 16 11 H 0.06 2.57 7.58 -2.39 -0.02 2.55 16 12 C -0.13 -4.87 6.20 32.21 0.20 -4.67 16 13 C 0.14 6.36 4.72 46.23 0.22 6.58 16 14 H 0.12 6.50 5.52 -2.38 -0.01 6.48 16 15 C -0.13 -4.68 6.44 32.21 0.21 -4.47 16 16 C -0.12 -4.27 6.32 32.21 0.20 -4.07 16 17 C 0.12 5.19 5.35 46.25 0.25 5.44 16 18 H 0.07 3.13 8.14 -2.38 -0.02 3.11 16 19 N -0.62 -31.84 2.98 -615.24 -1.84 -33.68 16 20 C -0.23 -13.08 10.59 84.03 0.89 -12.19 16 21 H 0.07 4.02 7.83 -2.91 -0.02 4.00 16 22 C -0.06 -3.49 5.50 84.86 0.47 -3.02 16 23 N -0.94 -55.04 10.46 21.65 0.23 -54.81 16 24 Si 0.98 46.54 29.55 68.60 2.03 48.57 16 25 H -0.28 -13.30 7.11 99.48 0.71 -12.60 16 26 H -0.29 -13.65 7.11 99.48 0.71 -12.95 16 27 H -0.28 -13.10 7.11 99.48 0.71 -12.40 16 28 S 0.22 3.95 22.10 -56.49 -1.25 2.70 16 29 H 0.09 0.53 8.14 -2.39 -0.02 0.52 16 30 H 0.08 0.49 8.14 -2.39 -0.02 0.47 16 31 H 0.09 0.48 8.14 -2.39 -0.02 0.46 16 32 H 0.17 1.96 8.06 -2.91 -0.02 1.94 16 33 H 0.07 1.69 8.14 -2.39 -0.02 1.67 16 34 H 0.06 1.94 6.01 -2.39 -0.01 1.93 16 35 H 0.09 1.53 8.14 -2.39 -0.02 1.51 16 36 H 0.41 10.07 7.03 -92.71 -0.65 9.42 16 37 H 0.05 2.05 8.14 -2.39 -0.02 2.03 16 38 H 0.09 2.79 7.38 -2.39 -0.02 2.77 16 39 H 0.04 1.60 8.14 -2.39 -0.02 1.58 16 40 H 0.09 2.51 7.82 -2.38 -0.02 2.49 16 41 H 0.08 2.43 6.39 -2.39 -0.02 2.41 16 42 H 0.04 1.70 8.14 -2.39 -0.02 1.68 16 43 H 0.25 14.19 8.31 -92.71 -0.77 13.42 16 Total: -1.00 -70.07 353.59 2.93 -67.14 By element: Atomic # 1 Polarization: 22.12 SS G_CDS: 0.38 Total: 22.50 kcal Atomic # 6 Polarization: -11.17 SS G_CDS: 5.06 Total: -6.11 kcal Atomic # 7 Polarization: -108.37 SS G_CDS: -3.23 Total: -111.60 kcal Atomic # 8 Polarization: -23.14 SS G_CDS: -0.06 Total: -23.20 kcal Atomic # 14 Polarization: 46.54 SS G_CDS: 2.03 Total: 48.57 kcal Atomic # 16 Polarization: 3.95 SS G_CDS: -1.25 Total: 2.70 kcal Total: -70.07 2.93 -67.14 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001095473948.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 87.597 kcal (2) G-P(sol) polarization free energy of solvation -70.066 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 17.531 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.928 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.138 kcal (6) G-S(sol) free energy of system = (1) + (5) 20.459 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds