Wall clock time and date at job start Tue Mar 31 2020 12:21:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50690 * 1 3 3 S 1.75506 * 124.71452 * 2 1 4 4 C 1.70448 * 92.44768 * 179.97438 * 3 2 1 5 5 C 1.36011 * 110.81640 * 0.02562 * 4 3 2 6 6 C 1.47183 * 123.46047 * 179.97438 * 5 4 3 7 7 O 1.21634 * 120.00428 * 180.02562 * 6 5 4 8 8 N 1.34784 * 120.00149 * 0.02562 * 6 5 4 9 9 C 1.46494 * 120.00153 * 179.97438 * 8 6 5 10 10 H 1.09000 * 110.55941 * 32.10780 * 9 8 6 11 11 C 1.54850 * 110.63161 * 269.03040 * 9 8 6 12 12 C 1.55835 * 103.44594 * 241.51116 * 11 9 8 13 13 H 1.09006 * 115.55991 * 158.81080 * 12 11 9 14 14 C 1.55848 * 105.06514 * 288.17309 * 12 11 9 15 15 C 1.56678 * 103.60031 * 71.59570 * 14 12 11 16 16 C 1.55842 * 110.62725 * 155.00322 * 9 8 6 17 17 H 1.09000 * 115.56081 * 319.68228 * 16 9 8 18 18 N 1.50235 * 101.04997 * 85.55383 * 16 9 8 19 19 C 1.36943 * 130.84011 * 233.99164 * 18 16 9 20 20 H 1.07999 * 119.99856 * 359.97438 * 19 18 16 21 21 C 1.38811 * 119.99909 * 180.02562 * 19 18 16 22 22 N 1.31616 * 120.00003 * 359.97438 * 21 19 18 23 23 Si 1.86803 * 119.99688 * 179.97438 * 21 19 18 24 24 H 1.48498 * 109.46975 * 90.00270 * 23 21 19 25 25 H 1.48498 * 109.46741 * 209.99870 * 23 21 19 26 26 H 1.48496 * 109.47029 * 329.99833 * 23 21 19 27 27 C 1.32772 * 124.71313 * 180.02562 * 2 1 3 28 28 C 1.50695 * 123.45724 * 359.95794 * 27 2 1 29 29 H 1.09002 * 109.47166 * 0.02562 * 1 2 3 30 30 H 1.08995 * 109.47250 * 120.02299 * 1 2 3 31 31 H 1.08999 * 109.47418 * 240.02521 * 1 2 3 32 32 H 1.08000 * 124.58705 * 180.02562 * 4 3 2 33 33 H 0.96999 * 119.99414 * 0.02562 * 8 6 5 34 34 H 1.09003 * 110.62120 * 0.02562 * 11 9 8 35 35 H 1.08997 * 110.62894 * 123.01633 * 11 9 8 36 36 H 1.09004 * 110.62748 * 190.31723 * 14 12 11 37 37 H 1.08998 * 110.62809 * 313.17627 * 14 12 11 38 38 H 1.09001 * 111.44157 * 241.94112 * 15 14 12 39 39 H 1.08997 * 110.62004 * 118.35726 * 15 14 12 40 40 H 0.97008 * 119.99907 * 180.02562 * 22 21 19 41 41 H 1.08998 * 109.47542 * 270.04317 * 28 27 2 42 42 H 1.09003 * 109.47228 * 30.04690 * 28 27 2 43 43 H 1.09004 * 109.47166 * 150.04112 * 28 27 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 16 2.5064 1.4427 0.0000 4 6 3.9476 0.5327 0.0008 5 6 3.6776 -0.8003 0.0004 6 6 4.7200 -1.8395 0.0004 7 8 4.4071 -3.0149 -0.0004 8 7 6.0214 -1.4886 0.0012 9 6 7.0588 -2.5229 0.0017 10 1 6.7199 -3.4053 -0.5410 11 6 7.4617 -2.8909 1.4509 12 6 8.9726 -2.5144 1.5137 13 1 9.3752 -2.3500 2.5133 14 6 9.6950 -3.5933 0.6518 15 6 9.2849 -3.2279 -0.8156 16 6 8.3813 -1.9742 -0.6137 17 1 8.2631 -1.3341 -1.4880 18 7 9.0134 -1.3317 0.5882 19 6 9.4821 -0.0595 0.7809 20 1 9.4237 0.6644 -0.0185 21 6 10.0331 0.2994 2.0034 22 7 10.1046 -0.5829 2.9774 23 14 10.6730 2.0346 2.2661 24 1 9.5788 2.8919 2.7886 25 1 11.7903 2.0074 3.2438 26 1 11.1585 2.5839 0.9747 27 6 2.2630 -1.0914 -0.0005 28 6 1.7026 -2.4903 -0.0002 29 1 -0.3633 1.0277 -0.0005 30 1 -0.3633 -0.5142 -0.8897 31 1 -0.3634 -0.5134 0.8902 32 1 4.9407 0.9572 0.0014 33 1 6.2709 -0.5513 0.0022 34 1 6.8892 -2.3041 2.1693 35 1 7.3240 -3.9574 1.6287 36 1 10.7756 -3.5260 0.7788 37 1 9.3408 -4.5913 0.9097 38 1 8.7224 -4.0351 -1.2848 39 1 10.1641 -2.9761 -1.4085 40 1 10.4893 -0.3320 3.8319 41 1 1.5674 -2.8274 1.0275 42 1 0.7414 -2.4968 -0.5142 43 1 2.3938 -3.1587 -0.5138 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001097133959.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:21:35 Heat of formation + Delta-G solvation = 29.827333 kcal Electronic energy + Delta-G solvation = -25117.740311 eV Core-core repulsion = 21676.296388 eV Total energy + Delta-G solvation = -3441.443923 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 320.130 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -39.96135 -38.75644 -37.11503 -33.92417 -32.67507 -32.15309 -29.41980 -29.10249 -28.79654 -27.80974 -25.46916 -24.38818 -23.98912 -21.35501 -19.84321 -19.77726 -18.81172 -18.37978 -17.35452 -17.00432 -16.67060 -15.50919 -14.89342 -14.77648 -14.44707 -14.09886 -13.96764 -13.75396 -13.48516 -13.09912 -12.81726 -12.69760 -12.56748 -12.10576 -12.05182 -11.92121 -11.79755 -11.69644 -11.21896 -11.13345 -10.95595 -10.92786 -10.82922 -10.51506 -10.34560 -10.12428 -9.91699 -9.61706 -9.25641 -9.15658 -8.98857 -8.68436 -8.50749 -8.24006 -6.97247 -5.77360 -3.16566 0.80447 1.50888 1.90189 2.04820 3.33233 3.38580 3.40918 3.61052 3.67914 4.37866 4.64555 4.96193 5.05869 5.11763 5.29122 5.32132 5.34499 5.37391 5.57108 5.64018 5.68113 5.70148 5.80138 5.82666 5.85791 6.03975 6.05881 6.12057 6.15879 6.24774 6.29491 6.41599 6.48484 6.58472 6.62827 6.75115 6.82198 6.94937 7.13228 7.32470 7.44337 7.77015 8.01988 8.15023 8.64256 9.04339 9.67624 10.49148 11.31566 Molecular weight = 320.13amu Principal moments of inertia in cm(-1) A = 0.013938 B = 0.004120 C = 0.003384 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2008.410140 B = 6794.184489 C = 8272.084700 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.074 4.074 2 C -0.217 4.217 3 S 0.171 5.829 4 C -0.209 4.209 5 C -0.143 4.143 6 C 0.572 3.428 7 O -0.546 6.546 8 N -0.699 5.699 9 C 0.129 3.871 10 H 0.081 0.919 11 C -0.143 4.143 12 C 0.153 3.847 13 H 0.153 0.847 14 C -0.137 4.137 15 C -0.129 4.129 16 C 0.125 3.875 17 H 0.086 0.914 18 N -0.591 5.591 19 C -0.216 4.216 20 H 0.078 0.922 21 C -0.009 4.009 22 N -0.918 5.918 23 Si 0.914 3.086 24 H -0.290 1.290 25 H -0.290 1.290 26 H -0.282 1.282 27 C -0.056 4.056 28 C -0.097 4.097 29 H 0.065 0.935 30 H 0.074 0.926 31 H 0.074 0.926 32 H 0.172 0.828 33 H 0.400 0.600 34 H 0.059 0.941 35 H 0.054 0.946 36 H 0.055 0.945 37 H 0.048 0.952 38 H 0.054 0.946 39 H 0.057 0.943 40 H 0.254 0.746 41 H 0.069 0.931 42 H 0.059 0.941 43 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.175 0.299 -6.437 16.487 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.334 4.334 3 S 0.439 5.561 4 C -0.347 4.347 5 C -0.161 4.161 6 C 0.357 3.643 7 O -0.426 6.426 8 N -0.348 5.348 9 C 0.023 3.977 10 H 0.099 0.901 11 C -0.183 4.183 12 C 0.047 3.953 13 H 0.170 0.830 14 C -0.176 4.176 15 C -0.169 4.169 16 C 0.016 3.984 17 H 0.104 0.896 18 N -0.312 5.312 19 C -0.344 4.344 20 H 0.095 0.905 21 C -0.205 4.205 22 N -0.566 5.566 23 Si 0.745 3.255 24 H -0.217 1.217 25 H -0.216 1.216 26 H -0.208 1.208 27 C -0.067 4.067 28 C -0.155 4.155 29 H 0.084 0.916 30 H 0.093 0.907 31 H 0.093 0.907 32 H 0.189 0.811 33 H 0.235 0.765 34 H 0.077 0.923 35 H 0.072 0.928 36 H 0.074 0.926 37 H 0.067 0.933 38 H 0.072 0.928 39 H 0.076 0.924 40 H 0.065 0.935 41 H 0.088 0.912 42 H 0.078 0.922 43 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges -15.510 1.305 -6.258 16.776 hybrid contribution 1.046 -0.018 0.193 1.064 sum -14.464 1.287 -6.065 15.737 Atomic orbital electron populations 1.20247 0.87712 1.02490 1.02848 1.24112 1.00164 0.95653 1.13439 1.82880 0.93957 1.08534 1.70756 1.25646 1.04695 0.97615 1.06733 1.20253 0.94047 0.92634 1.09200 1.17572 0.82287 0.87739 0.76709 1.90688 1.81999 1.18584 1.51304 1.45905 1.04852 1.11021 1.73011 1.22657 0.87240 0.89772 0.98009 0.90081 1.23461 1.00665 0.99026 0.95182 1.23764 0.90244 0.83541 0.97764 0.82990 1.23356 1.00494 0.98357 0.95405 1.23188 0.99086 0.97285 0.97375 1.23145 0.90725 0.93047 0.91471 0.89637 1.46524 1.68620 1.07978 1.08042 1.18991 1.32360 0.85541 0.97473 0.90461 1.24695 1.01657 0.98050 0.96082 1.69460 1.50457 1.32716 1.03967 0.86083 0.78276 0.83650 0.77527 1.21725 1.21647 1.20790 1.19719 0.90378 0.96586 0.99984 1.20616 1.00494 0.91750 1.02688 0.91644 0.90742 0.90739 0.81089 0.76454 0.92259 0.92768 0.92626 0.93339 0.92767 0.92434 0.93516 0.91222 0.92246 0.88913 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.61 9.46 36.00 0.34 -0.27 16 2 C -0.22 -2.51 6.44 -36.19 -0.23 -2.74 16 3 S 0.17 1.88 22.99 -107.50 -2.47 -0.59 16 4 C -0.21 -2.79 10.38 29.93 0.31 -2.48 16 5 C -0.14 -2.21 5.98 -104.63 -0.63 -2.84 16 6 C 0.57 10.22 7.79 -12.63 -0.10 10.12 16 7 O -0.55 -10.88 13.85 5.25 0.07 -10.81 16 8 N -0.70 -12.48 5.04 -52.55 -0.26 -12.74 16 9 C 0.13 2.45 2.80 -65.44 -0.18 2.26 16 10 H 0.08 1.53 7.21 -51.93 -0.37 1.16 16 11 C -0.14 -2.95 6.23 -24.24 -0.15 -3.10 16 12 C 0.15 3.48 4.72 -62.81 -0.30 3.19 16 13 H 0.15 3.97 5.52 -51.93 -0.29 3.68 16 14 C -0.14 -2.70 6.49 -23.23 -0.15 -2.85 16 15 C -0.13 -2.34 6.58 -23.23 -0.15 -2.49 16 16 C 0.12 2.43 5.01 -62.80 -0.31 2.12 16 17 H 0.09 1.58 8.14 -51.93 -0.42 1.15 16 18 N -0.59 -13.89 2.99 -145.82 -0.44 -14.33 16 19 C -0.22 -5.58 10.59 -15.06 -0.16 -5.74 16 20 H 0.08 1.92 7.83 -52.49 -0.41 1.51 16 21 C -0.01 -0.24 5.50 -17.43 -0.10 -0.33 16 22 N -0.92 -25.57 10.46 55.49 0.58 -24.99 16 23 Si 0.91 21.21 29.55 -169.99 -5.02 16.19 16 24 H -0.29 -6.74 7.11 56.52 0.40 -6.33 16 25 H -0.29 -6.88 7.11 56.52 0.40 -6.48 16 26 H -0.28 -6.41 7.11 56.52 0.40 -6.01 16 27 C -0.06 -0.77 6.01 -104.06 -0.63 -1.39 16 28 C -0.10 -1.23 9.27 36.00 0.33 -0.90 16 29 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 30 H 0.07 0.54 7.94 -51.93 -0.41 0.13 16 31 H 0.07 0.56 8.14 -51.93 -0.42 0.14 16 32 H 0.17 2.13 7.01 -52.49 -0.37 1.76 16 33 H 0.40 6.93 7.16 -40.82 -0.29 6.63 16 34 H 0.06 1.33 7.98 -51.93 -0.41 0.92 16 35 H 0.05 1.04 7.82 -51.93 -0.41 0.64 16 36 H 0.05 1.15 8.14 -51.93 -0.42 0.73 16 37 H 0.05 0.86 7.82 -51.93 -0.41 0.45 16 38 H 0.05 0.87 7.81 -51.93 -0.41 0.46 16 39 H 0.06 1.03 8.14 -51.93 -0.42 0.61 16 40 H 0.25 6.94 8.31 -40.82 -0.34 6.60 16 41 H 0.07 0.87 8.14 -51.93 -0.42 0.45 16 42 H 0.06 0.60 7.38 -51.93 -0.38 0.21 16 43 H 0.09 1.38 6.02 -51.93 -0.31 1.06 16 LS Contribution 354.11 15.07 5.34 5.34 Total: -1.00 -29.43 354.11 -10.45 -39.88 By element: Atomic # 1 Polarization: 15.64 SS G_CDS: -6.14 Total: 9.50 kcal Atomic # 6 Polarization: -5.35 SS G_CDS: -2.10 Total: -7.45 kcal Atomic # 7 Polarization: -51.93 SS G_CDS: -0.12 Total: -52.05 kcal Atomic # 8 Polarization: -10.88 SS G_CDS: 0.07 Total: -10.81 kcal Atomic # 14 Polarization: 21.21 SS G_CDS: -5.02 Total: 16.19 kcal Atomic # 16 Polarization: 1.88 SS G_CDS: -2.47 Total: -0.59 kcal Total LS contribution 5.34 Total: 5.34 kcal Total: -29.43 -10.45 -39.88 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001097133959.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 69.705 kcal (2) G-P(sol) polarization free energy of solvation -29.425 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 40.279 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.452 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.877 kcal (6) G-S(sol) free energy of system = (1) + (5) 29.827 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds