Wall clock time and date at job start Tue Mar 31 2020 12:21:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50690 * 1 3 3 S 1.75506 * 124.71452 * 2 1 4 4 C 1.70448 * 92.44768 * 179.97438 * 3 2 1 5 5 C 1.36011 * 110.81640 * 0.02562 * 4 3 2 6 6 C 1.47183 * 123.46047 * 179.97438 * 5 4 3 7 7 O 1.21634 * 120.00428 * 180.02562 * 6 5 4 8 8 N 1.34784 * 120.00149 * 0.02562 * 6 5 4 9 9 C 1.46494 * 120.00153 * 179.97438 * 8 6 5 10 10 H 1.09000 * 110.55941 * 32.10780 * 9 8 6 11 11 C 1.54850 * 110.63161 * 269.03040 * 9 8 6 12 12 C 1.55835 * 103.44594 * 241.51116 * 11 9 8 13 13 H 1.09006 * 115.55991 * 158.81080 * 12 11 9 14 14 C 1.55848 * 105.06514 * 288.17309 * 12 11 9 15 15 C 1.56678 * 103.60031 * 71.59570 * 14 12 11 16 16 C 1.55842 * 110.62725 * 155.00322 * 9 8 6 17 17 H 1.09000 * 115.56081 * 319.68228 * 16 9 8 18 18 N 1.50235 * 101.04997 * 85.55383 * 16 9 8 19 19 C 1.36943 * 130.84011 * 233.99164 * 18 16 9 20 20 H 1.07999 * 119.99856 * 359.97438 * 19 18 16 21 21 C 1.38811 * 119.99909 * 180.02562 * 19 18 16 22 22 N 1.31616 * 120.00003 * 359.97438 * 21 19 18 23 23 Si 1.86803 * 119.99688 * 179.97438 * 21 19 18 24 24 H 1.48498 * 109.46975 * 90.00270 * 23 21 19 25 25 H 1.48498 * 109.46741 * 209.99870 * 23 21 19 26 26 H 1.48496 * 109.47029 * 329.99833 * 23 21 19 27 27 C 1.32772 * 124.71313 * 180.02562 * 2 1 3 28 28 C 1.50695 * 123.45724 * 359.95794 * 27 2 1 29 29 H 1.09002 * 109.47166 * 0.02562 * 1 2 3 30 30 H 1.08995 * 109.47250 * 120.02299 * 1 2 3 31 31 H 1.08999 * 109.47418 * 240.02521 * 1 2 3 32 32 H 1.08000 * 124.58705 * 180.02562 * 4 3 2 33 33 H 0.96999 * 119.99414 * 0.02562 * 8 6 5 34 34 H 1.09003 * 110.62120 * 0.02562 * 11 9 8 35 35 H 1.08997 * 110.62894 * 123.01633 * 11 9 8 36 36 H 1.09004 * 110.62748 * 190.31723 * 14 12 11 37 37 H 1.08998 * 110.62809 * 313.17627 * 14 12 11 38 38 H 1.09001 * 111.44157 * 241.94112 * 15 14 12 39 39 H 1.08997 * 110.62004 * 118.35726 * 15 14 12 40 40 H 0.97008 * 119.99907 * 180.02562 * 22 21 19 41 41 H 1.08998 * 109.47542 * 270.04317 * 28 27 2 42 42 H 1.09003 * 109.47228 * 30.04690 * 28 27 2 43 43 H 1.09004 * 109.47166 * 150.04112 * 28 27 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 16 2.5064 1.4427 0.0000 4 6 3.9476 0.5327 0.0008 5 6 3.6776 -0.8003 0.0004 6 6 4.7200 -1.8395 0.0004 7 8 4.4071 -3.0149 -0.0004 8 7 6.0214 -1.4886 0.0012 9 6 7.0588 -2.5229 0.0017 10 1 6.7199 -3.4053 -0.5410 11 6 7.4617 -2.8909 1.4509 12 6 8.9726 -2.5144 1.5137 13 1 9.3752 -2.3500 2.5133 14 6 9.6950 -3.5933 0.6518 15 6 9.2849 -3.2279 -0.8156 16 6 8.3813 -1.9742 -0.6137 17 1 8.2631 -1.3341 -1.4880 18 7 9.0134 -1.3317 0.5882 19 6 9.4821 -0.0595 0.7809 20 1 9.4237 0.6644 -0.0185 21 6 10.0331 0.2994 2.0034 22 7 10.1046 -0.5829 2.9774 23 14 10.6730 2.0346 2.2661 24 1 9.5788 2.8919 2.7886 25 1 11.7903 2.0074 3.2438 26 1 11.1585 2.5839 0.9747 27 6 2.2630 -1.0914 -0.0005 28 6 1.7026 -2.4903 -0.0002 29 1 -0.3633 1.0277 -0.0005 30 1 -0.3633 -0.5142 -0.8897 31 1 -0.3634 -0.5134 0.8902 32 1 4.9407 0.9572 0.0014 33 1 6.2709 -0.5513 0.0022 34 1 6.8892 -2.3041 2.1693 35 1 7.3240 -3.9574 1.6287 36 1 10.7756 -3.5260 0.7788 37 1 9.3408 -4.5913 0.9097 38 1 8.7224 -4.0351 -1.2848 39 1 10.1641 -2.9761 -1.4085 40 1 10.4893 -0.3320 3.8319 41 1 1.5674 -2.8274 1.0275 42 1 0.7414 -2.4968 -0.5142 43 1 2.3938 -3.1587 -0.5138 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001097133959.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:21:35 Heat of formation + Delta-G solvation = 13.864578 kcal Electronic energy + Delta-G solvation = -25118.432508 eV Core-core repulsion = 21676.296388 eV Total energy + Delta-G solvation = -3442.136120 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 320.130 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -41.39878 -40.19215 -38.28347 -35.40692 -34.47474 -33.22984 -30.95743 -30.44461 -30.25410 -29.36308 -26.48408 -26.06541 -25.32946 -22.79616 -21.54275 -21.13077 -20.38703 -19.48345 -18.86232 -18.41375 -17.91185 -16.96842 -16.72254 -16.10293 -15.79790 -15.61169 -15.10307 -15.02172 -14.86143 -14.45550 -13.92033 -13.78395 -13.67679 -13.54256 -13.49642 -12.95904 -12.92720 -12.91016 -12.80163 -12.76440 -12.65878 -12.62901 -12.09705 -11.97746 -11.90687 -11.74490 -11.67741 -11.19974 -10.95925 -10.92893 -10.63903 -10.00495 -9.59859 -9.25423 -8.87623 -7.76437 -5.16469 -0.23861 0.58431 0.92833 0.96717 1.48091 1.49043 1.57049 2.26777 2.36801 2.49541 3.36824 3.44509 3.70277 3.92542 4.02089 4.06416 4.14635 4.25231 4.32094 4.42328 4.44275 4.49047 4.63300 4.65745 4.69146 4.75269 4.82052 4.84488 4.87912 4.90536 5.01117 5.06018 5.13683 5.15988 5.19215 5.30792 5.37013 5.50477 5.58490 5.65609 5.71485 5.88811 6.26508 6.61640 7.05160 7.25438 7.71885 8.57993 9.30907 Molecular weight = 320.13amu Principal moments of inertia in cm(-1) A = 0.013938 B = 0.004120 C = 0.003384 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2008.410140 B = 6794.184489 C = 8272.084700 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.077 4.077 2 C -0.211 4.211 3 S 0.230 5.770 4 C -0.220 4.220 5 C -0.173 4.173 6 C 0.569 3.431 7 O -0.572 6.572 8 N -0.700 5.700 9 C 0.140 3.860 10 H 0.088 0.912 11 C -0.133 4.133 12 C 0.140 3.860 13 H 0.116 0.884 14 C -0.130 4.130 15 C -0.119 4.119 16 C 0.126 3.874 17 H 0.099 0.901 18 N -0.610 5.610 19 C -0.215 4.215 20 H 0.085 0.915 21 C -0.066 4.066 22 N -0.947 5.947 23 Si 0.973 3.027 24 H -0.290 1.290 25 H -0.301 1.301 26 H -0.271 1.271 27 C -0.085 4.085 28 C -0.091 4.091 29 H 0.082 0.918 30 H 0.088 0.912 31 H 0.083 0.917 32 H 0.174 0.826 33 H 0.402 0.598 34 H 0.031 0.969 35 H 0.066 0.934 36 H 0.039 0.961 37 H 0.070 0.930 38 H 0.084 0.916 39 H 0.061 0.939 40 H 0.245 0.755 41 H 0.065 0.935 42 H 0.086 0.914 43 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.068 1.276 -8.112 18.941 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.328 4.328 3 S 0.499 5.501 4 C -0.358 4.358 5 C -0.191 4.191 6 C 0.356 3.644 7 O -0.454 6.454 8 N -0.349 5.349 9 C 0.034 3.966 10 H 0.106 0.894 11 C -0.173 4.173 12 C 0.033 3.967 13 H 0.133 0.867 14 C -0.169 4.169 15 C -0.159 4.159 16 C 0.019 3.981 17 H 0.117 0.883 18 N -0.331 5.331 19 C -0.344 4.344 20 H 0.103 0.897 21 C -0.258 4.258 22 N -0.597 5.597 23 Si 0.803 3.197 24 H -0.217 1.217 25 H -0.228 1.228 26 H -0.196 1.196 27 C -0.095 4.095 28 C -0.149 4.149 29 H 0.101 0.899 30 H 0.106 0.894 31 H 0.102 0.898 32 H 0.192 0.808 33 H 0.238 0.762 34 H 0.049 0.951 35 H 0.085 0.915 36 H 0.058 0.942 37 H 0.089 0.911 38 H 0.102 0.898 39 H 0.079 0.921 40 H 0.055 0.945 41 H 0.083 0.917 42 H 0.105 0.895 43 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -17.423 2.284 -7.970 19.295 hybrid contribution 1.546 -0.275 0.701 1.720 sum -15.877 2.009 -7.269 17.577 Atomic orbital electron populations 1.20419 0.85134 1.04057 1.03942 1.24591 1.01928 0.95268 1.10965 1.82678 0.91733 1.07066 1.68636 1.25846 1.06369 0.97575 1.06030 1.20202 0.94271 0.92667 1.11955 1.17989 0.82549 0.88088 0.75742 1.90664 1.82379 1.19827 1.52549 1.45870 1.04922 1.10835 1.73245 1.22475 0.87331 0.90324 0.96479 0.89381 1.23320 0.98909 0.99239 0.95864 1.23594 0.91662 0.84655 0.96754 0.86652 1.23246 0.99156 0.98456 0.96079 1.23148 0.99188 0.97352 0.96214 1.23338 0.90671 0.93519 0.90585 0.88282 1.46705 1.68954 1.07663 1.09794 1.19347 1.30911 0.86750 0.97396 0.89717 1.25418 1.02979 1.01181 0.96257 1.69719 1.51885 1.34117 1.04004 0.85140 0.77158 0.80049 0.77352 1.21724 1.22795 1.19565 1.19837 0.89923 0.97664 1.02069 1.20532 1.01073 0.90935 1.02396 0.89874 0.89353 0.89818 0.80823 0.76249 0.95055 0.91503 0.94219 0.91113 0.89776 0.92062 0.94523 0.91683 0.89546 0.91528 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.99 9.46 71.23 0.67 -0.32 16 2 C -0.21 -4.34 6.44 24.51 0.16 -4.18 16 3 S 0.23 4.48 22.99 -56.49 -1.30 3.18 16 4 C -0.22 -5.66 10.38 67.30 0.70 -4.96 16 5 C -0.17 -5.26 5.98 -19.87 -0.12 -5.38 16 6 C 0.57 20.52 7.79 86.59 0.67 21.20 16 7 O -0.57 -23.15 13.85 -4.14 -0.06 -23.20 16 8 N -0.70 -25.00 5.04 -438.40 -2.21 -27.21 16 9 C 0.14 5.22 2.80 46.61 0.13 5.35 16 10 H 0.09 3.20 7.21 -2.39 -0.02 3.18 16 11 C -0.13 -5.55 6.23 32.21 0.20 -5.35 16 12 C 0.14 6.47 4.72 46.23 0.22 6.69 16 13 H 0.12 6.31 5.52 -2.38 -0.01 6.30 16 14 C -0.13 -5.05 6.49 32.86 0.21 -4.83 16 15 C -0.12 -4.07 6.58 32.86 0.22 -3.85 16 16 C 0.13 4.76 5.01 46.23 0.23 4.99 16 17 H 0.10 3.46 8.14 -2.39 -0.02 3.44 16 18 N -0.61 -28.75 2.99 -615.26 -1.84 -30.59 16 19 C -0.22 -11.16 10.59 84.03 0.89 -10.27 16 20 H 0.09 4.16 7.83 -2.91 -0.02 4.13 16 21 C -0.07 -3.56 5.50 84.86 0.47 -3.09 16 22 N -0.95 -54.66 10.46 21.65 0.23 -54.43 16 23 Si 0.97 44.20 29.55 68.60 2.03 46.23 16 24 H -0.29 -13.02 7.11 99.48 0.71 -12.31 16 25 H -0.30 -14.07 7.11 99.48 0.71 -13.36 16 26 H -0.27 -11.63 7.11 99.48 0.71 -10.92 16 27 C -0.08 -2.25 6.01 -19.47 -0.12 -2.36 16 28 C -0.09 -2.25 9.27 71.23 0.66 -1.59 16 29 H 0.08 0.80 8.14 -2.39 -0.02 0.78 16 30 H 0.09 0.95 7.94 -2.39 -0.02 0.93 16 31 H 0.08 0.98 8.14 -2.39 -0.02 0.96 16 32 H 0.17 4.22 7.01 -2.91 -0.02 4.20 16 33 H 0.40 13.95 7.16 -92.71 -0.66 13.28 16 34 H 0.03 1.45 7.98 -2.39 -0.02 1.43 16 35 H 0.07 2.57 7.82 -2.39 -0.02 2.55 16 36 H 0.04 1.64 8.14 -2.38 -0.02 1.62 16 37 H 0.07 2.40 7.82 -2.39 -0.02 2.38 16 38 H 0.08 2.40 7.81 -2.39 -0.02 2.38 16 39 H 0.06 2.05 8.14 -2.39 -0.02 2.03 16 40 H 0.25 13.95 8.31 -92.70 -0.77 13.18 16 41 H 0.06 1.61 8.14 -2.39 -0.02 1.59 16 42 H 0.09 1.58 7.38 -2.39 -0.02 1.56 16 43 H 0.07 2.00 6.02 -2.39 -0.01 1.99 16 Total: -1.00 -65.08 354.11 2.41 -62.66 By element: Atomic # 1 Polarization: 30.97 SS G_CDS: 0.37 Total: 31.34 kcal Atomic # 6 Polarization: -13.16 SS G_CDS: 5.20 Total: -7.97 kcal Atomic # 7 Polarization: -108.41 SS G_CDS: -3.83 Total: -112.24 kcal Atomic # 8 Polarization: -23.15 SS G_CDS: -0.06 Total: -23.20 kcal Atomic # 14 Polarization: 44.20 SS G_CDS: 2.03 Total: 46.23 kcal Atomic # 16 Polarization: 4.48 SS G_CDS: -1.30 Total: 3.18 kcal Total: -65.08 2.41 -62.66 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001097133959.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 76.530 kcal (2) G-P(sol) polarization free energy of solvation -65.077 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 11.453 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.412 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.665 kcal (6) G-S(sol) free energy of system = (1) + (5) 13.865 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds