Wall clock time and date at job start Tue Mar 31 2020 12:26:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 N 1.31134 * 126.54903 * 2 1 4 4 C 1.34492 * 105.61140 * 179.97438 * 3 2 1 5 5 C 1.50697 * 126.28573 * 180.02562 * 4 3 2 6 6 N 1.46502 * 109.47245 * 89.99693 * 5 4 3 7 7 C 1.34817 * 126.59320 * 125.00223 * 6 5 4 8 8 C 1.36598 * 106.83864 * 180.02562 * 7 6 5 9 9 C 1.47517 * 125.76908 * 179.97438 * 8 7 6 10 10 O 1.21598 * 120.00549 * 359.97438 * 9 8 7 11 11 N 1.34783 * 120.00066 * 179.97438 * 9 8 7 12 12 C 1.46493 * 120.00389 * 180.02562 * 11 9 8 13 13 C 1.53001 * 109.47539 * 179.97438 * 12 11 9 14 14 C 1.52994 * 109.47407 * 179.97438 * 13 12 11 15 15 C 1.50697 * 109.47184 * 179.97438 * 14 13 12 16 16 H 1.08001 * 119.99988 * 0.02562 * 15 14 13 17 17 C 1.37882 * 120.00209 * 180.02562 * 15 14 13 18 18 N 1.31513 * 119.99965 * 180.02562 * 17 15 14 19 19 Si 1.86797 * 119.99540 * 0.02562 * 17 15 14 20 20 H 1.48497 * 109.47544 * 90.00307 * 19 17 15 21 21 H 1.48504 * 109.47092 * 210.00253 * 19 17 15 22 22 H 1.48500 * 109.47589 * 329.99976 * 19 17 15 23 23 N 1.34403 * 108.45824 * 359.97438 * 8 7 6 24 24 N 1.28764 * 109.52087 * 359.70773 * 23 8 7 25 25 N 1.29945 * 107.42860 * 359.97438 * 4 3 2 26 26 O 1.21304 * 110.24811 * 359.71096 * 25 4 3 27 27 H 1.09001 * 109.46953 * 90.00244 * 1 2 3 28 28 H 1.09000 * 109.47318 * 209.99842 * 1 2 3 29 29 H 1.09000 * 109.47161 * 330.00473 * 1 2 3 30 30 H 1.09002 * 109.46933 * 209.99854 * 5 4 3 31 31 H 1.08999 * 109.47263 * 329.99505 * 5 4 3 32 32 H 1.08000 * 126.58290 * 359.97202 * 7 6 5 33 33 H 0.97005 * 119.99438 * 359.97438 * 11 9 8 34 34 H 1.09010 * 109.47013 * 300.00399 * 12 11 9 35 35 H 1.09004 * 109.47194 * 59.99535 * 12 11 9 36 36 H 1.09001 * 109.46763 * 300.00493 * 13 12 11 37 37 H 1.09006 * 109.46505 * 59.99671 * 13 12 11 38 38 H 1.09000 * 109.47645 * 300.00682 * 14 13 12 39 39 H 1.09010 * 109.46697 * 60.00321 * 14 13 12 40 40 H 0.97001 * 119.99607 * 179.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 7 2.2880 1.0535 0.0000 4 6 3.5441 0.5729 0.0006 5 6 4.8111 1.3887 0.0014 6 7 5.2210 1.6529 1.3828 7 6 6.4181 1.3693 1.9342 8 6 6.3629 1.7835 3.2347 9 6 7.4529 1.6715 4.2223 10 8 8.5151 1.1739 3.9019 11 7 7.2715 2.1208 5.4801 12 6 8.3541 2.0102 6.4608 13 6 7.8916 2.5904 7.7988 14 6 9.0221 2.4743 8.8231 15 6 8.5667 3.0463 10.1408 16 1 7.5704 3.4518 10.2381 17 6 9.4219 3.0521 11.2224 18 7 9.0243 3.5509 12.3724 19 14 11.1453 2.3515 11.0539 20 1 12.0771 3.4261 10.6270 21 1 11.5871 1.8040 12.3618 22 1 11.1420 1.2672 10.0392 23 7 5.1475 2.3102 3.4623 24 7 4.4459 2.2552 2.3840 25 7 3.4646 -0.7242 0.0015 26 8 2.3029 -1.0735 0.0072 27 1 -0.3633 0.0000 -1.0277 28 1 -0.3634 -0.8900 0.5138 29 1 -0.3633 0.8900 0.5138 30 1 5.5987 0.8371 -0.5121 31 1 4.6351 2.3337 -0.5125 32 1 7.2591 0.9033 1.4423 33 1 6.4243 2.5181 5.7356 34 1 8.6201 0.9611 6.5916 35 1 9.2236 2.5638 6.1062 36 1 7.6260 3.6394 7.6675 37 1 7.0220 2.0371 8.1535 38 1 9.2874 1.4252 8.9543 39 1 9.8919 3.0274 8.4685 40 1 9.6259 3.5547 13.1334 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001116829718.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:26:30 Heat of formation + Delta-G solvation = 94.103854 kcal Electronic energy + Delta-G solvation = -24817.006250 eV Core-core repulsion = 20864.349103 eV Total energy + Delta-G solvation = -3952.657147 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 320.138 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -46.81829 -43.38612 -40.49133 -37.61946 -37.02870 -35.96207 -35.15341 -34.32947 -33.33502 -32.12255 -30.13467 -29.61763 -28.80152 -25.48989 -25.10310 -24.09543 -23.52762 -22.63060 -22.21708 -21.26246 -19.61290 -19.24143 -18.90760 -18.56966 -17.41399 -17.23469 -17.10104 -16.64046 -16.23662 -16.07990 -15.77307 -15.59501 -15.06548 -14.95432 -14.76464 -14.24943 -14.21580 -14.03432 -13.80620 -13.61604 -13.30477 -13.04814 -12.86906 -12.73827 -12.69474 -12.44354 -12.25735 -11.95591 -11.78322 -11.70101 -11.59428 -11.33407 -11.23731 -11.10957 -10.75078 -10.55828 -10.09234 -8.28164 -6.32448 -0.15679 0.00705 0.50633 0.59267 1.35855 1.38473 1.40035 1.52283 1.76892 2.06846 2.15155 2.31867 2.37890 2.73901 3.06547 3.07383 3.41880 3.69636 3.70942 3.83729 4.07510 4.09154 4.20525 4.25056 4.40764 4.50847 4.52601 4.59646 4.62982 4.85384 4.89251 4.89581 5.03489 5.10107 5.17688 5.32277 5.48626 5.56507 5.65914 6.28665 6.36346 6.75510 6.76992 6.93747 7.05613 7.32088 8.88425 Molecular weight = 320.14amu Principal moments of inertia in cm(-1) A = 0.027257 B = 0.001862 C = 0.001801 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1027.010344 B =15032.101969 C =15541.539570 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 C 0.195 3.805 3 N -0.494 5.494 4 C 0.139 3.861 5 C 0.215 3.785 6 N -0.357 5.357 7 C 0.125 3.875 8 C -0.121 4.121 9 C 0.603 3.397 10 O -0.567 6.567 11 N -0.707 5.707 12 C 0.127 3.873 13 C -0.103 4.103 14 C -0.011 4.011 15 C -0.533 4.533 16 H 0.034 0.966 17 C 0.002 3.998 18 N -0.951 5.951 19 Si 0.951 3.049 20 H -0.266 1.266 21 H -0.285 1.285 22 H -0.245 1.245 23 N -0.221 5.221 24 N -0.075 5.075 25 N -0.386 5.386 26 O 0.078 5.922 27 H 0.129 0.871 28 H 0.119 0.881 29 H 0.112 0.888 30 H 0.175 0.825 31 H 0.154 0.846 32 H 0.246 0.754 33 H 0.413 0.587 34 H 0.067 0.933 35 H 0.069 0.931 36 H 0.062 0.938 37 H 0.060 0.940 38 H 0.024 0.976 39 H 0.024 0.976 40 H 0.266 0.734 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.500 -8.829 -35.645 39.859 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 C -0.025 4.025 3 N -0.228 5.228 4 C -0.135 4.135 5 C 0.094 3.906 6 N -0.143 5.143 7 C -0.032 4.032 8 C -0.260 4.260 9 C 0.388 3.612 10 O -0.446 6.446 11 N -0.357 5.357 12 C 0.004 3.996 13 C -0.141 4.141 14 C -0.048 4.048 15 C -0.571 4.571 16 H 0.052 0.948 17 C -0.194 4.194 18 N -0.592 5.592 19 Si 0.774 3.226 20 H -0.191 1.191 21 H -0.211 1.211 22 H -0.168 1.168 23 N -0.095 5.095 24 N -0.056 5.056 25 N -0.093 5.093 26 O 0.017 5.983 27 H 0.147 0.853 28 H 0.138 0.862 29 H 0.130 0.870 30 H 0.192 0.808 31 H 0.172 0.828 32 H 0.263 0.737 33 H 0.249 0.751 34 H 0.085 0.915 35 H 0.087 0.913 36 H 0.080 0.920 37 H 0.079 0.921 38 H 0.042 0.958 39 H 0.042 0.958 40 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -15.267 -8.604 -35.392 39.493 hybrid contribution 0.860 -0.257 0.584 1.071 sum -14.408 -8.861 -34.807 38.699 Atomic orbital electron populations 1.20814 0.76483 1.07438 1.07488 1.29869 1.00517 0.79250 0.92823 1.71957 1.00163 1.29756 1.20880 1.25821 0.96012 0.88486 1.03162 1.20528 0.91340 1.02194 0.76579 1.50496 1.10463 1.41064 1.12311 1.23952 0.90777 0.95700 0.92771 1.21457 0.94757 1.13815 0.96001 1.16931 0.85223 0.77585 0.81504 1.90785 1.27206 1.46882 1.79740 1.45879 1.18519 1.61159 1.10164 1.21427 0.89418 1.01370 0.87354 1.21506 0.99259 1.00770 0.92602 1.19459 0.95442 0.96829 0.93118 1.21480 1.00314 1.39487 0.95811 0.94783 1.26035 1.03462 0.95275 0.94669 1.70072 1.38470 1.47954 1.02711 0.85646 0.78954 0.79942 0.78054 1.19140 1.21074 1.16831 1.74665 1.03144 1.12833 1.18897 1.82074 1.15753 1.17151 0.90589 1.74664 0.98823 1.15781 1.20073 1.85282 1.11157 1.36459 1.65449 0.85257 0.86209 0.86993 0.80759 0.82815 0.73749 0.75062 0.91516 0.91276 0.91967 0.92121 0.95751 0.95790 0.92524 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -0.03 10.51 71.24 0.75 0.72 16 2 C 0.19 2.16 8.51 88.38 0.75 2.91 16 3 N -0.49 -7.87 11.55 -303.20 -3.50 -11.37 16 4 C 0.14 2.10 7.67 138.46 1.06 3.17 16 5 C 0.21 1.89 7.16 85.63 0.61 2.50 16 6 N -0.36 -5.95 3.68 -350.83 -1.29 -7.24 16 7 C 0.12 2.10 11.27 83.85 0.95 3.04 16 8 C -0.12 -3.04 6.99 40.81 0.29 -2.76 16 9 C 0.60 17.90 7.82 86.69 0.68 18.58 16 10 O -0.57 -19.14 16.86 -4.02 -0.07 -19.21 16 11 N -0.71 -21.18 5.55 -466.27 -2.59 -23.77 16 12 C 0.13 4.20 5.67 86.38 0.49 4.69 16 13 C -0.10 -3.95 5.27 30.59 0.16 -3.79 16 14 C -0.01 -0.49 4.04 29.85 0.12 -0.37 16 15 C -0.53 -31.00 9.66 25.60 0.25 -30.76 16 16 H 0.03 2.17 7.99 -2.91 -0.02 2.14 16 17 C 0.00 0.13 5.47 84.66 0.46 0.59 16 18 N -0.95 -60.44 13.96 21.45 0.30 -60.14 16 19 Si 0.95 44.80 27.47 68.60 1.88 46.68 16 20 H -0.27 -12.05 7.11 99.48 0.71 -11.34 16 21 H -0.28 -13.19 7.11 99.48 0.71 -12.49 16 22 H -0.24 -10.70 6.54 99.48 0.65 -10.04 16 23 N -0.22 -6.09 12.04 -50.00 -0.60 -6.70 16 24 N -0.08 -1.88 13.64 37.02 0.50 -1.38 16 25 N -0.39 -6.63 12.16 -60.33 -0.73 -7.36 16 26 O 0.08 1.14 11.31 74.86 0.85 1.98 16 27 H 0.13 -0.51 8.14 -2.39 -0.02 -0.53 16 28 H 0.12 -0.36 8.14 -2.39 -0.02 -0.38 16 29 H 0.11 0.06 8.14 -2.39 -0.02 0.04 16 30 H 0.17 0.09 8.08 -2.39 -0.02 0.07 16 31 H 0.15 0.71 8.14 -2.39 -0.02 0.69 16 32 H 0.25 2.06 8.06 -2.91 -0.02 2.03 16 33 H 0.41 11.57 8.16 -92.70 -0.76 10.81 16 34 H 0.07 2.22 8.14 -2.38 -0.02 2.20 16 35 H 0.07 2.27 8.14 -2.38 -0.02 2.25 16 36 H 0.06 2.36 8.14 -2.39 -0.02 2.34 16 37 H 0.06 2.32 8.14 -2.38 -0.02 2.30 16 38 H 0.02 1.11 7.20 -2.39 -0.02 1.09 16 39 H 0.02 1.07 7.57 -2.38 -0.02 1.06 16 40 H 0.27 15.75 8.31 -92.71 -0.77 14.98 16 Total: -1.00 -84.34 359.53 1.60 -82.75 By element: Atomic # 1 Polarization: 6.95 SS G_CDS: 0.28 Total: 7.23 kcal Atomic # 6 Polarization: -8.04 SS G_CDS: 6.57 Total: -1.47 kcal Atomic # 7 Polarization: -110.04 SS G_CDS: -7.91 Total: -117.96 kcal Atomic # 8 Polarization: -18.01 SS G_CDS: 0.78 Total: -17.23 kcal Atomic # 14 Polarization: 44.80 SS G_CDS: 1.88 Total: 46.68 kcal Total: -84.34 1.60 -82.75 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001116829718.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 176.849 kcal (2) G-P(sol) polarization free energy of solvation -84.343 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 92.506 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.598 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.745 kcal (6) G-S(sol) free energy of system = (1) + (5) 94.104 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds