Wall clock time and date at job start Tue Mar 31 2020 12:47:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.53009 * 109.46979 * 2 1 4 4 C 1.52994 * 109.46979 * 179.97438 * 3 2 1 5 5 N 1.46904 * 109.47045 * 181.06880 * 4 3 2 6 6 C 1.46898 * 111.00005 * 60.88232 * 5 4 3 7 7 C 1.50697 * 109.46926 * 66.04684 * 6 5 4 8 8 H 1.07999 * 120.00506 * 0.02562 * 7 6 5 9 9 C 1.37882 * 119.99981 * 179.97438 * 7 6 5 10 10 N 1.31514 * 119.99802 * 0.02562 * 9 7 6 11 11 Si 1.86797 * 120.00236 * 180.02562 * 9 7 6 12 12 H 1.48507 * 109.47063 * 0.02562 * 11 9 7 13 13 H 1.48500 * 109.47490 * 120.00309 * 11 9 7 14 14 H 1.48506 * 109.47021 * 240.00704 * 11 9 7 15 15 C 1.46899 * 110.99628 * 296.93087 * 5 4 3 16 16 C 1.50700 * 109.47282 * 288.45342 * 15 5 4 17 17 C 1.34231 * 125.03606 * 264.74575 * 16 15 5 18 18 C 1.46497 * 106.99568 * 179.91735 * 17 16 15 19 19 C 1.40663 * 106.05577 * 0.33240 * 18 17 16 20 20 C 1.39097 * 119.43547 * 179.79802 * 19 18 17 21 21 C 1.37760 * 119.94139 * 0.02562 * 20 19 18 22 22 C 1.38792 * 120.68586 * 0.02562 * 21 20 19 23 23 C 1.37770 * 120.36691 * 359.97426 * 22 21 20 24 24 Cl 1.73599 * 120.18271 * 180.02562 * 23 22 21 25 25 N 1.36853 * 125.03779 * 85.04779 * 16 15 5 26 26 H 0.97003 * 125.05806 * 359.97438 * 25 16 15 27 27 H 1.08994 * 109.47284 * 299.99667 * 1 2 3 28 28 H 1.08997 * 109.47308 * 60.00161 * 1 2 3 29 29 H 1.08997 * 109.46923 * 180.02562 * 1 2 3 30 30 H 1.08994 * 109.47284 * 240.00333 * 2 1 3 31 31 H 1.08997 * 109.47308 * 119.99839 * 2 1 3 32 32 H 1.09002 * 109.46690 * 60.00364 * 3 2 1 33 33 H 1.08997 * 109.46969 * 300.00046 * 3 2 1 34 34 H 1.08999 * 109.47351 * 61.06952 * 4 3 2 35 35 H 1.09001 * 109.47294 * 301.06554 * 4 3 2 36 36 H 1.09002 * 109.47351 * 186.04698 * 6 5 4 37 37 H 1.08999 * 109.47148 * 306.04650 * 6 5 4 38 38 H 0.97002 * 119.99921 * 179.97438 * 10 9 7 39 39 H 1.08992 * 109.47462 * 48.45579 * 15 5 4 40 40 H 1.09001 * 109.47022 * 168.45790 * 15 5 4 41 41 H 1.08002 * 126.50260 * 0.02798 * 17 16 15 42 42 H 1.08002 * 120.02823 * 179.97438 * 20 19 18 43 43 H 1.08000 * 119.65847 * 179.97438 * 21 20 19 44 44 H 1.08001 * 119.81960 * 179.97438 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 6 3.5699 1.4426 0.0006 5 7 4.0595 2.8274 0.0265 6 6 3.6053 3.5239 1.2375 7 6 4.2448 2.8948 2.4484 8 1 4.9214 2.0613 2.3302 9 6 3.9670 3.3841 3.7072 10 7 3.1436 4.3994 3.8511 11 14 4.7603 2.6049 5.2082 12 1 5.6400 1.4878 4.7794 13 1 5.5683 3.6232 5.9259 14 1 3.7035 2.0842 6.1124 15 6 3.6499 3.5532 -1.1832 16 6 4.4342 3.0434 -2.3647 17 6 5.5600 3.5989 -2.8399 18 6 5.9869 2.7897 -3.9840 19 6 5.0309 1.7662 -4.1150 20 6 5.1683 0.8286 -5.1333 21 6 6.2346 0.9082 -6.0018 22 6 7.1792 1.9169 -5.8732 23 6 7.0631 2.8562 -4.8721 24 17 8.2470 4.1163 -4.7160 25 7 4.1010 1.9490 -3.1159 26 1 3.3253 1.3860 -2.9667 27 1 -0.3633 0.5137 0.8900 28 1 -0.3634 0.5138 -0.8900 29 1 -0.3633 -1.0276 0.0005 30 1 1.8933 -0.5137 -0.8900 31 1 1.8933 -0.5138 0.8900 32 1 1.6766 1.9563 0.8901 33 1 1.6766 1.9564 -0.8900 34 1 3.9336 0.9453 -0.8985 35 1 3.9329 0.9124 0.8812 36 1 3.8900 4.5745 1.1808 37 1 2.5211 3.4450 1.3169 38 1 2.9479 4.7433 4.7367 39 1 2.5857 3.3959 -1.3584 40 1 3.8429 4.6178 -1.0510 41 1 6.0577 4.4751 -2.4513 42 1 4.4401 0.0385 -5.2423 43 1 6.3371 0.1776 -6.7906 44 1 8.0099 1.9658 -6.5617 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001136861174.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:47:34 Heat of formation + Delta-G solvation = 38.717644 kcal Electronic energy + Delta-G solvation = -24383.195196 eV Core-core repulsion = 20940.093080 eV Total energy + Delta-G solvation = -3443.102116 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 320.135 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -41.27428 -38.02305 -36.93372 -36.04851 -34.05853 -32.60942 -31.75402 -30.02087 -29.22138 -28.31578 -27.00027 -24.90395 -23.44121 -22.29353 -21.60860 -21.32206 -20.35606 -19.39295 -17.73035 -16.42935 -16.16788 -15.49983 -15.37656 -14.97555 -14.76671 -14.43203 -14.41692 -14.21664 -13.78880 -13.64163 -12.94243 -12.74848 -12.60074 -12.48139 -12.30351 -12.09323 -11.93953 -11.35459 -11.24015 -11.20310 -11.09600 -11.04581 -10.84151 -10.81897 -10.71770 -10.67730 -10.54214 -10.01645 -9.90178 -9.45422 -9.25527 -8.48390 -8.20286 -7.57439 -7.29608 -6.07372 -4.08130 0.96132 1.51572 2.23428 2.81348 3.15467 3.28288 3.36508 3.41215 3.75450 4.39639 4.68458 4.81282 4.94897 5.05208 5.11628 5.16552 5.19031 5.29399 5.29626 5.39628 5.45524 5.53484 5.64722 5.69357 5.88304 5.93228 5.98850 6.00973 6.05033 6.06562 6.14880 6.29592 6.30230 6.33612 6.40904 6.61151 6.66275 6.79105 6.86059 7.13626 7.20944 7.29551 7.56744 7.73559 7.98903 8.08938 8.44992 8.99118 9.56221 11.03336 Molecular weight = 320.14amu Principal moments of inertia in cm(-1) A = 0.012263 B = 0.003545 C = 0.002950 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2282.761468 B = 7896.672693 C = 9489.257609 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.117 4.117 3 C -0.161 4.161 4 C 0.064 3.936 5 N -0.526 5.526 6 C 0.190 3.810 7 C -0.504 4.504 8 H 0.063 0.937 9 C 0.057 3.943 10 N -0.898 5.898 11 Si 0.895 3.105 12 H -0.272 1.272 13 H -0.284 1.284 14 H -0.285 1.285 15 C 0.102 3.898 16 C 0.118 3.882 17 C -0.186 4.186 18 C -0.097 4.097 19 C 0.107 3.893 20 C -0.125 4.125 21 C -0.098 4.098 22 C -0.143 4.143 23 C 0.012 3.988 24 Cl -0.074 7.074 25 N -0.588 5.588 26 H 0.414 0.586 27 H 0.055 0.945 28 H 0.048 0.952 29 H 0.048 0.952 30 H 0.051 0.949 31 H 0.063 0.937 32 H 0.081 0.919 33 H 0.048 0.952 34 H 0.047 0.953 35 H 0.084 0.916 36 H 0.031 0.969 37 H 0.001 0.999 38 H 0.261 0.739 39 H 0.042 0.958 40 H 0.096 0.904 41 H 0.149 0.851 42 H 0.122 0.878 43 H 0.130 0.870 44 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.622 -6.515 -18.247 19.385 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.156 4.156 3 C -0.200 4.200 4 C -0.065 4.065 5 N -0.249 5.249 6 C 0.065 3.935 7 C -0.543 4.543 8 H 0.081 0.919 9 C -0.144 4.144 10 N -0.538 5.538 11 Si 0.723 3.277 12 H -0.197 1.197 13 H -0.210 1.210 14 H -0.212 1.212 15 C -0.026 4.026 16 C 0.010 3.990 17 C -0.211 4.211 18 C -0.103 4.103 19 C -0.001 4.001 20 C -0.146 4.146 21 C -0.118 4.118 22 C -0.163 4.163 23 C -0.015 4.015 24 Cl -0.045 7.045 25 N -0.191 5.191 26 H 0.251 0.749 27 H 0.074 0.926 28 H 0.067 0.933 29 H 0.067 0.933 30 H 0.070 0.930 31 H 0.082 0.918 32 H 0.100 0.900 33 H 0.067 0.933 34 H 0.066 0.934 35 H 0.102 0.898 36 H 0.049 0.951 37 H 0.019 0.981 38 H 0.070 0.930 39 H 0.060 0.940 40 H 0.114 0.886 41 H 0.167 0.833 42 H 0.140 0.860 43 H 0.148 0.852 44 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges 1.061 -6.316 -17.997 19.103 hybrid contribution -0.764 -0.501 0.996 1.351 sum 0.297 -6.817 -17.002 18.320 Atomic orbital electron populations 1.21769 0.96417 1.00916 1.01709 1.21424 0.95352 0.97320 1.01475 1.22305 0.98810 0.96508 1.02354 1.22095 0.91447 0.91531 1.01439 1.62384 1.59154 1.01709 1.01637 1.19836 0.94337 0.94210 0.85097 1.21139 1.26664 1.16406 0.90056 0.91883 1.24951 0.95329 0.95119 0.99045 1.69956 1.35646 1.25060 1.23113 0.86484 0.79155 0.79333 0.82725 1.19668 1.20983 1.21166 1.20834 0.95100 0.99272 0.87439 1.20532 0.96872 0.87825 0.93742 1.21387 0.97876 1.03655 0.98199 1.18907 0.95228 0.97926 0.98215 1.18051 0.91531 0.97741 0.92800 1.20064 1.00323 0.98951 0.95267 1.20617 0.93794 0.98261 0.99121 1.20711 1.01146 0.95589 0.98862 1.20266 0.91377 0.92563 0.97265 1.98352 1.56745 1.51855 1.97518 1.41920 1.24219 1.26769 1.26191 0.74871 0.92556 0.93295 0.93293 0.93037 0.91788 0.90018 0.93332 0.93431 0.89754 0.95117 0.98116 0.92973 0.94000 0.88586 0.83334 0.86006 0.85187 0.85310 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.80 9.91 37.15 0.37 -1.43 16 2 C -0.12 -1.56 5.93 -26.73 -0.16 -1.72 16 3 C -0.16 -2.54 4.58 -26.73 -0.12 -2.66 16 4 C 0.06 1.12 5.01 -3.82 -0.02 1.10 16 5 N -0.53 -10.43 4.65 -237.52 -1.10 -11.53 16 6 C 0.19 4.58 4.49 -4.98 -0.02 4.56 16 7 C -0.50 -13.52 8.50 -34.44 -0.29 -13.81 16 8 H 0.06 1.71 7.11 -52.49 -0.37 1.33 16 9 C 0.06 1.56 5.46 -17.82 -0.10 1.46 16 10 N -0.90 -25.78 13.29 55.43 0.74 -25.05 16 11 Si 0.90 21.24 29.54 -169.99 -5.02 16.22 16 12 H -0.27 -6.38 7.11 56.52 0.40 -5.98 16 13 H -0.28 -6.73 7.11 56.52 0.40 -6.33 16 14 H -0.29 -6.71 7.11 56.52 0.40 -6.31 16 15 C 0.10 1.68 5.35 -4.98 -0.03 1.66 16 16 C 0.12 1.80 6.00 -81.76 -0.49 1.31 16 17 C -0.19 -2.93 10.86 -37.67 -0.41 -3.34 16 18 C -0.10 -1.44 6.21 -105.11 -0.65 -2.09 16 19 C 0.11 1.44 7.27 -83.99 -0.61 0.83 16 20 C -0.13 -1.37 10.07 -39.44 -0.40 -1.77 16 21 C -0.10 -0.99 10.01 -39.55 -0.40 -1.38 16 22 C -0.14 -1.60 9.81 -39.55 -0.39 -1.99 16 23 C 0.01 0.17 6.35 -39.21 -0.25 -0.08 16 24 Cl -0.07 -0.95 28.91 -51.86 -1.50 -2.45 16 25 N -0.59 -7.72 5.26 -6.95 -0.04 -7.76 16 26 H 0.41 4.57 8.55 -40.82 -0.35 4.22 16 27 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16 28 H 0.05 0.54 8.14 -51.93 -0.42 0.12 16 29 H 0.05 0.51 8.14 -51.93 -0.42 0.09 16 30 H 0.05 0.60 8.14 -51.93 -0.42 0.18 16 31 H 0.06 0.90 8.14 -51.93 -0.42 0.48 16 32 H 0.08 1.57 6.24 -51.93 -0.32 1.24 16 33 H 0.05 0.70 6.30 -51.93 -0.33 0.37 16 34 H 0.05 0.76 6.33 -51.93 -0.33 0.43 16 35 H 0.08 1.69 6.83 -51.93 -0.35 1.33 16 36 H 0.03 0.80 7.87 -51.93 -0.41 0.40 16 37 H 0.00 0.03 6.00 -51.93 -0.31 -0.28 16 38 H 0.26 7.11 8.31 -40.82 -0.34 6.77 16 39 H 0.04 0.64 5.92 -51.93 -0.31 0.34 16 40 H 0.10 1.59 7.81 -51.93 -0.41 1.18 16 41 H 0.15 2.29 8.06 -52.49 -0.42 1.87 16 42 H 0.12 1.03 8.06 -52.49 -0.42 0.61 16 43 H 0.13 0.91 8.06 -52.49 -0.42 0.49 16 44 H 0.13 1.17 8.06 -52.49 -0.42 0.75 16 LS Contribution 368.99 15.07 5.56 5.56 Total: -1.00 -29.00 368.99 -11.76 -40.76 By element: Atomic # 1 Polarization: 10.02 SS G_CDS: -6.43 Total: 3.59 kcal Atomic # 6 Polarization: -15.39 SS G_CDS: -3.96 Total: -19.35 kcal Atomic # 7 Polarization: -43.93 SS G_CDS: -0.40 Total: -44.34 kcal Atomic # 14 Polarization: 21.24 SS G_CDS: -5.02 Total: 16.22 kcal Atomic # 17 Polarization: -0.95 SS G_CDS: -1.50 Total: -2.45 kcal Total LS contribution 5.56 Total: 5.56 kcal Total: -29.00 -11.76 -40.76 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001136861174.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 79.480 kcal (2) G-P(sol) polarization free energy of solvation -29.004 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 50.476 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.759 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.763 kcal (6) G-S(sol) free energy of system = (1) + (5) 38.718 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds