Wall clock time and date at job start Tue Mar 31 2020 12:47:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.53009 * 109.46979 * 2 1 4 4 C 1.52994 * 109.46979 * 179.97438 * 3 2 1 5 5 N 1.46904 * 109.47045 * 181.06880 * 4 3 2 6 6 C 1.46898 * 111.00005 * 60.88232 * 5 4 3 7 7 C 1.50697 * 109.46926 * 66.04684 * 6 5 4 8 8 H 1.07999 * 120.00506 * 0.02562 * 7 6 5 9 9 C 1.37882 * 119.99981 * 179.97438 * 7 6 5 10 10 N 1.31514 * 119.99802 * 0.02562 * 9 7 6 11 11 Si 1.86797 * 120.00236 * 180.02562 * 9 7 6 12 12 H 1.48507 * 109.47063 * 0.02562 * 11 9 7 13 13 H 1.48500 * 109.47490 * 120.00309 * 11 9 7 14 14 H 1.48506 * 109.47021 * 240.00704 * 11 9 7 15 15 C 1.46899 * 110.99628 * 296.93087 * 5 4 3 16 16 C 1.50700 * 109.47282 * 288.45342 * 15 5 4 17 17 C 1.34231 * 125.03606 * 264.74575 * 16 15 5 18 18 C 1.46497 * 106.99568 * 179.91735 * 17 16 15 19 19 C 1.40663 * 106.05577 * 0.33240 * 18 17 16 20 20 C 1.39097 * 119.43547 * 179.79802 * 19 18 17 21 21 C 1.37760 * 119.94139 * 0.02562 * 20 19 18 22 22 C 1.38792 * 120.68586 * 0.02562 * 21 20 19 23 23 C 1.37770 * 120.36691 * 359.97426 * 22 21 20 24 24 Cl 1.73599 * 120.18271 * 180.02562 * 23 22 21 25 25 N 1.36853 * 125.03779 * 85.04779 * 16 15 5 26 26 H 0.97003 * 125.05806 * 359.97438 * 25 16 15 27 27 H 1.08994 * 109.47284 * 299.99667 * 1 2 3 28 28 H 1.08997 * 109.47308 * 60.00161 * 1 2 3 29 29 H 1.08997 * 109.46923 * 180.02562 * 1 2 3 30 30 H 1.08994 * 109.47284 * 240.00333 * 2 1 3 31 31 H 1.08997 * 109.47308 * 119.99839 * 2 1 3 32 32 H 1.09002 * 109.46690 * 60.00364 * 3 2 1 33 33 H 1.08997 * 109.46969 * 300.00046 * 3 2 1 34 34 H 1.08999 * 109.47351 * 61.06952 * 4 3 2 35 35 H 1.09001 * 109.47294 * 301.06554 * 4 3 2 36 36 H 1.09002 * 109.47351 * 186.04698 * 6 5 4 37 37 H 1.08999 * 109.47148 * 306.04650 * 6 5 4 38 38 H 0.97002 * 119.99921 * 179.97438 * 10 9 7 39 39 H 1.08992 * 109.47462 * 48.45579 * 15 5 4 40 40 H 1.09001 * 109.47022 * 168.45790 * 15 5 4 41 41 H 1.08002 * 126.50260 * 0.02798 * 17 16 15 42 42 H 1.08002 * 120.02823 * 179.97438 * 20 19 18 43 43 H 1.08000 * 119.65847 * 179.97438 * 21 20 19 44 44 H 1.08001 * 119.81960 * 179.97438 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 6 3.5699 1.4426 0.0006 5 7 4.0595 2.8274 0.0265 6 6 3.6053 3.5239 1.2375 7 6 4.2448 2.8948 2.4484 8 1 4.9214 2.0613 2.3302 9 6 3.9670 3.3841 3.7072 10 7 3.1436 4.3994 3.8511 11 14 4.7603 2.6049 5.2082 12 1 5.6400 1.4878 4.7794 13 1 5.5683 3.6232 5.9259 14 1 3.7035 2.0842 6.1124 15 6 3.6499 3.5532 -1.1832 16 6 4.4342 3.0434 -2.3647 17 6 5.5600 3.5989 -2.8399 18 6 5.9869 2.7897 -3.9840 19 6 5.0309 1.7662 -4.1150 20 6 5.1683 0.8286 -5.1333 21 6 6.2346 0.9082 -6.0018 22 6 7.1792 1.9169 -5.8732 23 6 7.0631 2.8562 -4.8721 24 17 8.2470 4.1163 -4.7160 25 7 4.1010 1.9490 -3.1159 26 1 3.3253 1.3860 -2.9667 27 1 -0.3633 0.5137 0.8900 28 1 -0.3634 0.5138 -0.8900 29 1 -0.3633 -1.0276 0.0005 30 1 1.8933 -0.5137 -0.8900 31 1 1.8933 -0.5138 0.8900 32 1 1.6766 1.9563 0.8901 33 1 1.6766 1.9564 -0.8900 34 1 3.9336 0.9453 -0.8985 35 1 3.9329 0.9124 0.8812 36 1 3.8900 4.5745 1.1808 37 1 2.5211 3.4450 1.3169 38 1 2.9479 4.7433 4.7367 39 1 2.5857 3.3959 -1.3584 40 1 3.8429 4.6178 -1.0510 41 1 6.0577 4.4751 -2.4513 42 1 4.4401 0.0385 -5.2423 43 1 6.3371 0.1776 -6.7906 44 1 8.0099 1.9658 -6.5617 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001136861174.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:47:34 Heat of formation + Delta-G solvation = 23.625821 kcal Electronic energy + Delta-G solvation = -24383.849627 eV Core-core repulsion = 20940.093080 eV Total energy + Delta-G solvation = -3443.756547 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 320.135 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -42.31387 -39.37802 -38.02082 -37.01858 -35.39198 -34.54723 -32.77668 -31.24246 -30.22960 -29.80286 -28.47347 -26.30632 -25.09630 -23.35013 -22.66567 -22.48445 -21.62749 -20.75901 -18.73751 -18.36855 -17.29977 -16.97547 -16.61213 -16.28358 -16.16222 -15.77498 -15.38063 -15.31504 -15.14262 -14.86281 -14.24863 -14.02766 -13.97764 -13.60595 -13.52709 -13.44772 -13.07066 -12.98122 -12.68862 -12.58877 -12.48147 -12.30258 -12.12839 -12.06981 -11.97510 -11.92451 -11.80343 -11.70827 -11.32088 -11.25927 -10.59571 -10.47677 -9.20844 -8.91137 -8.59789 -8.18935 -6.27050 0.00735 0.59635 1.27825 1.38645 1.40794 1.52613 1.66264 2.12873 2.40689 2.82507 3.14161 3.41253 3.63568 3.93916 3.98123 3.99505 4.15787 4.17686 4.27048 4.28771 4.38702 4.41696 4.50002 4.57233 4.75999 4.78908 4.80955 4.87132 4.94254 5.00419 5.02262 5.10962 5.19400 5.25142 5.35818 5.39994 5.44750 5.48115 5.51522 5.67014 5.69818 5.77761 6.05926 6.10766 6.33251 6.56809 6.64549 6.88120 7.41724 8.91452 Molecular weight = 320.14amu Principal moments of inertia in cm(-1) A = 0.012263 B = 0.003545 C = 0.002950 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2282.761468 B = 7896.672693 C = 9489.257609 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.114 4.114 3 C -0.149 4.149 4 C 0.069 3.931 5 N -0.539 5.539 6 C 0.207 3.793 7 C -0.515 4.515 8 H 0.056 0.944 9 C 0.007 3.993 10 N -0.931 5.931 11 Si 0.959 3.041 12 H -0.267 1.267 13 H -0.281 1.281 14 H -0.278 1.278 15 C 0.109 3.891 16 C 0.111 3.889 17 C -0.204 4.204 18 C -0.126 4.126 19 C 0.099 3.901 20 C -0.123 4.123 21 C -0.088 4.088 22 C -0.139 4.139 23 C -0.010 4.010 24 Cl -0.081 7.081 25 N -0.579 5.579 26 H 0.424 0.576 27 H 0.038 0.962 28 H 0.060 0.940 29 H 0.067 0.933 30 H 0.078 0.922 31 H 0.051 0.949 32 H 0.041 0.959 33 H 0.065 0.935 34 H 0.072 0.928 35 H 0.056 0.944 36 H 0.002 0.998 37 H -0.015 1.015 38 H 0.263 0.737 39 H 0.056 0.944 40 H 0.086 0.914 41 H 0.137 0.863 42 H 0.153 0.847 43 H 0.170 0.830 44 H 0.151 0.849 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.647 -9.240 -20.528 22.521 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.152 4.152 3 C -0.188 4.188 4 C -0.059 4.059 5 N -0.261 5.261 6 C 0.081 3.919 7 C -0.554 4.554 8 H 0.075 0.925 9 C -0.191 4.191 10 N -0.572 5.572 11 Si 0.785 3.215 12 H -0.191 1.191 13 H -0.206 1.206 14 H -0.204 1.204 15 C -0.019 4.019 16 C 0.002 3.998 17 C -0.229 4.229 18 C -0.131 4.131 19 C -0.009 4.009 20 C -0.144 4.144 21 C -0.107 4.107 22 C -0.159 4.159 23 C -0.037 4.037 24 Cl -0.052 7.052 25 N -0.184 5.184 26 H 0.264 0.736 27 H 0.057 0.943 28 H 0.079 0.921 29 H 0.086 0.914 30 H 0.096 0.904 31 H 0.070 0.930 32 H 0.060 0.940 33 H 0.083 0.917 34 H 0.090 0.910 35 H 0.075 0.925 36 H 0.020 0.980 37 H 0.003 0.997 38 H 0.072 0.928 39 H 0.074 0.926 40 H 0.104 0.896 41 H 0.155 0.845 42 H 0.171 0.829 43 H 0.187 0.813 44 H 0.168 0.832 Dipole moment (debyes) X Y Z Total from point charges 1.080 -9.064 -20.301 22.258 hybrid contribution -0.714 0.323 1.550 1.737 sum 0.366 -8.741 -18.751 20.692 Atomic orbital electron populations 1.21746 0.95226 1.02119 1.01473 1.21407 0.96375 0.95230 1.02184 1.22151 0.97239 0.98321 1.01113 1.22042 0.92761 0.89952 1.01177 1.62220 1.59844 1.02736 1.01337 1.19431 0.93025 0.92818 0.86617 1.21417 1.26419 1.16166 0.91348 0.92549 1.25758 0.95835 0.95579 1.01971 1.70067 1.36948 1.26361 1.23855 0.85481 0.78365 0.78530 0.79148 1.19110 1.20637 1.20404 1.20714 0.96103 0.98539 0.86590 1.20114 0.96852 0.89077 0.93722 1.21447 0.98349 1.03885 0.99267 1.19071 0.96674 0.98752 0.98628 1.18376 0.91077 0.98084 0.93401 1.20499 1.01111 0.98740 0.94031 1.21129 0.92389 0.97972 0.99220 1.21111 1.01912 0.94833 0.98028 1.20516 0.91438 0.93476 0.98247 1.98343 1.56867 1.52346 1.97615 1.41760 1.24592 1.26157 1.25861 0.73621 0.94283 0.92096 0.91359 0.90368 0.93001 0.94043 0.91668 0.91017 0.92541 0.98003 0.99734 0.92812 0.92646 0.89552 0.84492 0.82914 0.81268 0.83174 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.28 9.91 71.98 0.71 -2.56 16 2 C -0.11 -2.84 5.93 30.60 0.18 -2.66 16 3 C -0.15 -4.70 4.58 30.60 0.14 -4.56 16 4 C 0.07 2.45 5.01 86.30 0.43 2.88 16 5 N -0.54 -22.10 4.65 -905.39 -4.21 -26.31 16 6 C 0.21 10.53 4.49 85.56 0.38 10.91 16 7 C -0.52 -28.65 8.50 25.60 0.22 -28.44 16 8 H 0.06 3.15 7.11 -2.91 -0.02 3.13 16 9 C 0.01 0.37 5.46 84.66 0.46 0.84 16 10 N -0.93 -55.13 13.29 21.45 0.28 -54.85 16 11 Si 0.96 44.32 29.54 68.60 2.03 46.34 16 12 H -0.27 -11.98 7.11 99.48 0.71 -11.28 16 13 H -0.28 -12.76 7.11 99.48 0.71 -12.05 16 14 H -0.28 -12.47 7.11 99.48 0.71 -11.77 16 15 C 0.11 3.69 5.35 85.56 0.46 4.14 16 16 C 0.11 3.39 6.00 40.86 0.25 3.63 16 17 C -0.20 -6.58 10.86 23.51 0.26 -6.32 16 18 C -0.13 -3.66 6.21 -20.18 -0.13 -3.78 16 19 C 0.10 2.44 7.27 39.02 0.28 2.72 16 20 C -0.12 -2.20 10.07 22.36 0.23 -1.97 16 21 C -0.09 -1.37 10.01 22.29 0.22 -1.14 16 22 C -0.14 -2.70 9.81 22.29 0.22 -2.49 16 23 C -0.01 -0.25 6.35 22.51 0.14 -0.11 16 24 Cl -0.08 -2.07 28.91 -2.72 -0.08 -2.15 16 25 N -0.58 -14.25 5.26 -175.91 -0.92 -15.17 16 26 H 0.42 8.25 8.55 -92.71 -0.79 7.46 16 27 H 0.04 0.98 8.14 -2.39 -0.02 0.96 16 28 H 0.06 1.20 8.14 -2.39 -0.02 1.18 16 29 H 0.07 1.25 8.14 -2.39 -0.02 1.23 16 30 H 0.08 1.56 8.14 -2.39 -0.02 1.54 16 31 H 0.05 1.42 8.14 -2.39 -0.02 1.40 16 32 H 0.04 1.65 6.24 -2.39 -0.01 1.63 16 33 H 0.06 1.81 6.30 -2.39 -0.02 1.80 16 34 H 0.07 2.19 6.33 -2.39 -0.02 2.18 16 35 H 0.06 2.31 6.83 -2.39 -0.02 2.30 16 36 H 0.00 0.10 7.87 -2.39 -0.02 0.09 16 37 H -0.01 -0.80 6.00 -2.39 -0.01 -0.81 16 38 H 0.26 14.69 8.31 -92.71 -0.77 13.92 16 39 H 0.06 1.71 5.92 -2.39 -0.01 1.69 16 40 H 0.09 3.04 7.81 -2.39 -0.02 3.02 16 41 H 0.14 4.54 8.06 -2.91 -0.02 4.52 16 42 H 0.15 1.77 8.06 -2.91 -0.02 1.75 16 43 H 0.17 1.33 8.06 -2.91 -0.02 1.31 16 44 H 0.15 2.22 8.06 -2.91 -0.02 2.19 16 Total: -1.00 -65.41 368.99 1.77 -63.64 By element: Atomic # 1 Polarization: 17.18 SS G_CDS: 0.22 Total: 17.40 kcal Atomic # 6 Polarization: -33.36 SS G_CDS: 4.46 Total: -28.91 kcal Atomic # 7 Polarization: -91.48 SS G_CDS: -4.85 Total: -96.33 kcal Atomic # 14 Polarization: 44.32 SS G_CDS: 2.03 Total: 46.34 kcal Atomic # 17 Polarization: -2.07 SS G_CDS: -0.08 Total: -2.15 kcal Total: -65.41 1.77 -63.64 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001136861174.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 87.264 kcal (2) G-P(sol) polarization free energy of solvation -65.412 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 21.852 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.774 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.638 kcal (6) G-S(sol) free energy of system = (1) + (5) 23.626 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds