Wall clock time and date at job start Tue Mar 31 2020 12:47:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52993 * 109.47216 * 2 1 4 4 C 1.53002 * 109.47216 * 180.02562 * 3 2 1 5 5 N 1.46896 * 109.47127 * 179.29361 * 4 3 2 6 6 C 1.46891 * 111.00585 * 287.84860 * 5 4 3 7 7 C 1.50704 * 109.47191 * 299.21807 * 6 5 4 8 8 H 1.07997 * 119.99607 * 4.71837 * 7 6 5 9 9 C 1.37879 * 120.00234 * 184.70981 * 7 6 5 10 10 N 1.31517 * 119.99757 * 0.02562 * 9 7 6 11 11 Si 1.86794 * 120.00231 * 180.02562 * 9 7 6 12 12 H 1.48500 * 109.46988 * 60.00166 * 11 9 7 13 13 H 1.48497 * 109.47429 * 180.02562 * 11 9 7 14 14 H 1.48507 * 109.46932 * 300.00736 * 11 9 7 15 15 C 1.46902 * 110.99953 * 163.89105 * 5 4 3 16 16 C 1.50696 * 109.47450 * 190.00327 * 15 5 4 17 17 C 1.34249 * 126.49918 * 259.98148 * 16 15 5 18 18 N 1.36827 * 109.93323 * 180.02562 * 17 16 15 19 19 H 0.96998 * 125.06701 * 179.97438 * 18 17 16 20 20 C 1.37729 * 109.86323 * 0.23755 * 18 17 16 21 21 C 1.39130 * 133.48909 * 179.75533 * 20 18 17 22 22 C 1.37743 * 119.79396 * 180.02562 * 21 20 18 23 23 C 1.38924 * 120.65737 * 0.02562 * 22 21 20 24 24 Cl 1.73598 * 119.75267 * 179.97438 * 23 22 21 25 25 C 1.36725 * 120.50027 * 359.57422 * 23 22 21 26 26 C 1.39634 * 119.75311 * 0.63710 * 25 23 22 27 27 H 1.08999 * 109.46849 * 300.00072 * 1 2 3 28 28 H 1.08993 * 109.47092 * 60.00239 * 1 2 3 29 29 H 1.09005 * 109.47056 * 180.02562 * 1 2 3 30 30 H 1.08998 * 109.47133 * 239.99200 * 2 1 3 31 31 H 1.09007 * 109.47118 * 120.00013 * 2 1 3 32 32 H 1.08998 * 109.47722 * 59.99561 * 3 2 1 33 33 H 1.09004 * 109.46699 * 299.99382 * 3 2 1 34 34 H 1.09005 * 109.47031 * 59.29590 * 4 3 2 35 35 H 1.08996 * 109.46990 * 299.30048 * 4 3 2 36 36 H 1.09004 * 109.47127 * 59.21801 * 6 5 4 37 37 H 1.09006 * 109.47738 * 179.21873 * 6 5 4 38 38 H 0.96999 * 119.99804 * 179.97438 * 10 9 7 39 39 H 1.09007 * 109.46808 * 70.00260 * 15 5 4 40 40 H 1.09000 * 109.47328 * 310.00574 * 15 5 4 41 41 H 1.07996 * 125.03017 * 0.04000 * 17 16 15 42 42 H 1.08000 * 120.09955 * 359.97438 * 21 20 18 43 43 H 1.08003 * 119.67026 * 180.02562 * 22 21 20 44 44 H 1.08007 * 120.12179 * 179.97438 * 25 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 3.5700 1.4424 -0.0006 5 7 4.0597 2.8273 -0.0177 6 6 3.8384 3.4479 -1.3306 7 6 4.5877 2.6742 -2.3847 8 1 5.1073 1.7652 -2.1200 9 6 4.6095 3.1266 -3.6869 10 7 3.9769 4.2338 -4.0091 11 14 5.5376 2.1673 -4.9936 12 1 4.9709 0.7987 -5.0989 13 1 5.4081 2.8591 -6.3012 14 1 6.9722 2.0815 -4.6193 15 6 5.4776 2.8890 0.3615 16 6 5.8792 4.3262 0.5720 17 6 6.5374 5.1071 -0.2993 18 7 6.7265 6.3506 0.2393 19 1 7.1780 7.0866 -0.2026 20 6 6.1851 6.3997 1.5048 21 6 6.1041 7.3948 2.4737 22 6 5.4832 7.1318 3.6748 23 6 4.9360 5.8807 3.9303 24 17 4.1593 5.5746 5.4524 25 6 4.9974 4.8910 2.9889 26 6 5.6264 5.1355 1.7665 27 1 -0.3633 0.5138 0.8900 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3633 -1.0277 0.0005 30 1 1.8934 -0.5139 -0.8899 31 1 1.8934 -0.5139 0.8900 32 1 1.6767 1.9564 0.8899 33 1 1.6767 1.9562 -0.8901 34 1 3.9330 0.9178 -0.8845 35 1 3.9337 0.9394 0.8953 36 1 2.7732 3.4390 -1.5618 37 1 4.1974 4.4769 -1.3113 38 1 3.9926 4.5523 -4.9251 39 1 6.0852 2.4544 -0.4323 40 1 5.6316 2.3299 1.2844 41 1 6.8684 4.7995 -1.2802 42 1 6.5276 8.3703 2.2850 43 1 5.4211 7.9059 4.4254 44 1 4.5703 3.9205 3.1942 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001137712627.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:47:45 Heat of formation + Delta-G solvation = 21.731660 kcal Electronic energy + Delta-G solvation = -24620.801409 eV Core-core repulsion = 21176.962725 eV Total energy + Delta-G solvation = -3443.838684 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 320.135 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -42.16973 -38.88130 -38.22966 -36.74238 -35.61448 -34.50149 -33.03653 -30.73295 -30.03271 -29.58648 -28.46548 -26.01351 -24.79812 -23.83538 -22.72658 -22.29417 -21.30600 -20.23464 -18.79313 -18.25636 -17.43230 -16.81187 -16.67587 -16.43046 -16.11185 -15.48740 -15.28713 -15.13189 -14.98700 -14.71171 -14.27167 -13.94530 -13.71738 -13.56306 -13.46795 -13.25005 -13.21252 -13.02103 -12.75877 -12.41878 -12.24442 -12.21872 -11.99736 -11.94874 -11.80056 -11.71714 -11.63351 -11.50767 -11.40449 -11.24624 -10.51449 -10.50271 -9.03804 -8.87712 -8.50420 -8.05078 -6.24326 0.17151 0.53730 1.31656 1.38365 1.40327 1.47007 1.78424 2.30161 2.40920 2.86029 3.17737 3.59256 3.80205 3.94470 4.15025 4.20217 4.28235 4.29552 4.39090 4.47899 4.58631 4.59724 4.72595 4.79659 4.83833 4.92974 4.98938 5.00109 5.03932 5.11095 5.15940 5.19528 5.33713 5.39191 5.43167 5.46591 5.50629 5.54553 5.59217 5.72310 5.85593 5.87195 6.14305 6.20220 6.40650 6.71185 6.75178 6.98419 7.45684 8.94645 Molecular weight = 320.14amu Principal moments of inertia in cm(-1) A = 0.010141 B = 0.004476 C = 0.003290 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2760.405278 B = 6253.921824 C = 8507.805897 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.116 4.116 3 C -0.102 4.102 4 C 0.061 3.939 5 N -0.538 5.538 6 C 0.210 3.790 7 C -0.541 4.541 8 H 0.055 0.945 9 C 0.020 3.980 10 N -0.924 5.924 11 Si 0.944 3.056 12 H -0.276 1.276 13 H -0.287 1.287 14 H -0.267 1.267 15 C 0.137 3.863 16 C -0.163 4.163 17 C 0.067 3.933 18 N -0.582 5.582 19 H 0.429 0.571 20 C 0.083 3.917 21 C -0.112 4.112 22 C -0.097 4.097 23 C -0.069 4.069 24 Cl -0.077 7.077 25 C -0.064 4.064 26 C -0.102 4.102 27 H 0.058 0.942 28 H 0.041 0.959 29 H 0.067 0.933 30 H 0.051 0.949 31 H 0.074 0.926 32 H 0.060 0.940 33 H 0.032 0.968 34 H 0.024 0.976 35 H 0.072 0.928 36 H -0.008 1.008 37 H 0.011 0.989 38 H 0.261 0.739 39 H 0.033 0.967 40 H 0.074 0.926 41 H 0.167 0.833 42 H 0.158 0.842 43 H 0.159 0.841 44 H 0.125 0.875 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.802 2.408 13.719 14.439 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.154 4.154 3 C -0.140 4.140 4 C -0.067 4.067 5 N -0.261 5.261 6 C 0.084 3.916 7 C -0.580 4.580 8 H 0.074 0.926 9 C -0.180 4.180 10 N -0.565 5.565 11 Si 0.770 3.230 12 H -0.201 1.201 13 H -0.213 1.213 14 H -0.192 1.192 15 C 0.009 3.991 16 C -0.170 4.170 17 C -0.061 4.061 18 N -0.186 5.186 19 H 0.268 0.732 20 C -0.025 4.025 21 C -0.133 4.133 22 C -0.117 4.117 23 C -0.096 4.096 24 Cl -0.049 7.049 25 C -0.083 4.083 26 C -0.108 4.108 27 H 0.077 0.923 28 H 0.060 0.940 29 H 0.086 0.914 30 H 0.069 0.931 31 H 0.092 0.908 32 H 0.079 0.921 33 H 0.051 0.949 34 H 0.042 0.958 35 H 0.091 0.909 36 H 0.010 0.990 37 H 0.029 0.971 38 H 0.070 0.930 39 H 0.051 0.949 40 H 0.093 0.907 41 H 0.184 0.816 42 H 0.176 0.824 43 H 0.176 0.824 44 H 0.143 0.857 Dipole moment (debyes) X Y Z Total from point charges 3.496 2.841 13.964 14.672 hybrid contribution 0.790 -0.546 -2.101 2.311 sum 4.287 2.294 11.862 12.820 Atomic orbital electron populations 1.21732 0.95122 1.02038 1.01530 1.21444 0.96472 0.95635 1.01889 1.21434 0.94892 0.97035 1.00673 1.22009 0.95581 0.89499 0.99633 1.62454 1.16673 1.17084 1.29927 1.19272 0.94046 0.94155 0.84162 1.21882 1.32325 1.09266 0.94563 0.92643 1.25633 0.96296 0.95630 1.00410 1.70077 1.44044 1.23064 1.19276 0.85829 0.79650 0.78901 0.78623 1.20115 1.21296 1.19183 1.20155 0.88961 0.91226 0.98749 1.20179 1.05944 0.97001 0.93870 1.21782 1.01511 0.84336 0.98462 1.41658 1.51141 1.12729 1.13054 0.73156 1.18620 1.00073 0.96326 0.87495 1.20237 1.03126 0.98392 0.91524 1.20885 0.98001 0.95343 0.97472 1.20319 1.04389 0.96323 0.88599 1.98331 1.80096 1.96164 1.30294 1.20123 0.97920 0.99181 0.91093 1.19074 1.02776 0.94082 0.94855 0.92292 0.93954 0.91385 0.93052 0.90760 0.92116 0.94895 0.95752 0.90930 0.99018 0.97052 0.93000 0.94885 0.90749 0.81592 0.82415 0.82369 0.85655 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.65 9.91 71.98 0.71 -2.93 16 2 C -0.12 -3.31 5.93 30.59 0.18 -3.12 16 3 C -0.10 -3.64 5.28 30.59 0.16 -3.48 16 4 C 0.06 2.32 4.80 86.30 0.41 2.73 16 5 N -0.54 -22.93 4.66 -905.36 -4.22 -27.15 16 6 C 0.21 10.81 4.79 85.56 0.41 11.22 16 7 C -0.54 -28.60 7.34 25.60 0.19 -28.42 16 8 H 0.06 2.89 5.95 -2.91 -0.02 2.87 16 9 C 0.02 1.06 5.46 84.65 0.46 1.52 16 10 N -0.92 -53.43 13.29 21.45 0.28 -53.14 16 11 Si 0.94 42.45 29.54 68.60 2.03 44.47 16 12 H -0.28 -12.26 7.11 99.48 0.71 -11.55 16 13 H -0.29 -12.84 7.11 99.48 0.71 -12.13 16 14 H -0.27 -11.45 7.11 99.48 0.71 -10.75 16 15 C 0.14 5.29 5.31 85.56 0.45 5.75 16 16 C -0.16 -6.06 4.92 -18.62 -0.09 -6.15 16 17 C 0.07 2.32 10.97 83.00 0.91 3.23 16 18 N -0.58 -16.41 6.07 -187.58 -1.14 -17.55 16 19 H 0.43 8.93 8.96 -92.71 -0.83 8.10 16 20 C 0.08 2.45 7.28 39.02 0.28 2.73 16 21 C -0.11 -2.58 10.08 22.37 0.23 -2.36 16 22 C -0.10 -2.21 9.79 22.32 0.22 -1.99 16 23 C -0.07 -1.84 6.28 22.08 0.14 -1.70 16 24 Cl -0.08 -1.86 28.93 -2.72 -0.08 -1.94 16 25 C -0.06 -2.00 9.81 22.25 0.22 -1.79 16 26 C -0.10 -3.50 6.35 -20.20 -0.13 -3.63 16 27 H 0.06 1.36 8.14 -2.39 -0.02 1.35 16 28 H 0.04 1.13 8.14 -2.39 -0.02 1.11 16 29 H 0.07 1.40 8.14 -2.38 -0.02 1.38 16 30 H 0.05 1.53 8.14 -2.39 -0.02 1.51 16 31 H 0.07 1.83 8.14 -2.38 -0.02 1.81 16 32 H 0.06 2.09 8.14 -2.39 -0.02 2.07 16 33 H 0.03 1.38 6.73 -2.39 -0.02 1.36 16 34 H 0.02 1.03 6.13 -2.38 -0.01 1.02 16 35 H 0.07 2.38 7.81 -2.39 -0.02 2.36 16 36 H -0.01 -0.48 6.67 -2.38 -0.02 -0.49 16 37 H 0.01 0.64 6.60 -2.38 -0.02 0.62 16 38 H 0.26 14.40 8.31 -92.71 -0.77 13.63 16 39 H 0.03 1.37 6.60 -2.38 -0.02 1.35 16 40 H 0.07 2.56 7.86 -2.39 -0.02 2.54 16 41 H 0.17 5.93 8.06 -2.91 -0.02 5.91 16 42 H 0.16 2.50 8.06 -2.91 -0.02 2.47 16 43 H 0.16 2.63 8.06 -2.91 -0.02 2.61 16 44 H 0.13 3.93 8.06 -2.91 -0.02 3.90 16 Total: -1.00 -62.45 370.81 1.81 -60.64 By element: Atomic # 1 Polarization: 22.88 SS G_CDS: 0.18 Total: 23.06 kcal Atomic # 6 Polarization: -33.15 SS G_CDS: 4.76 Total: -28.39 kcal Atomic # 7 Polarization: -92.77 SS G_CDS: -5.07 Total: -97.84 kcal Atomic # 14 Polarization: 42.45 SS G_CDS: 2.03 Total: 44.47 kcal Atomic # 17 Polarization: -1.86 SS G_CDS: -0.08 Total: -1.94 kcal Total: -62.45 1.81 -60.64 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001137712627.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 82.371 kcal (2) G-P(sol) polarization free energy of solvation -62.454 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 19.917 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.815 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.639 kcal (6) G-S(sol) free energy of system = (1) + (5) 21.732 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds