Wall clock time and date at job start Tue Mar 31 2020 12:47:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52995 * 109.47253 * 2 1 4 4 C 1.52999 * 109.47253 * 180.02562 * 3 2 1 5 5 N 1.46904 * 109.47541 * 179.29359 * 4 3 2 6 6 C 1.46895 * 110.99719 * 287.85104 * 5 4 3 7 7 C 1.50695 * 109.47707 * 299.20553 * 6 5 4 8 8 H 1.08000 * 119.99756 * 4.72483 * 7 6 5 9 9 C 1.37874 * 120.00644 * 184.72803 * 7 6 5 10 10 N 1.31520 * 119.99827 * 359.97438 * 9 7 6 11 11 Si 1.86803 * 120.00347 * 180.02562 * 9 7 6 12 12 H 1.48492 * 109.47181 * 59.99553 * 11 9 7 13 13 H 1.48502 * 109.47269 * 179.97438 * 11 9 7 14 14 H 1.48499 * 109.46688 * 299.99777 * 11 9 7 15 15 C 1.46890 * 110.99925 * 163.89437 * 5 4 3 16 16 C 1.50704 * 109.46905 * 190.00077 * 15 5 4 17 17 C 1.34223 * 126.50416 * 259.97839 * 16 15 5 18 18 N 1.36860 * 109.91834 * 179.77637 * 17 16 15 19 19 H 0.96995 * 125.05923 * 180.32226 * 18 17 16 20 20 C 1.37704 * 109.87205 * 0.40973 * 18 17 16 21 21 C 1.39140 * 133.41240 * 179.88733 * 20 18 17 22 22 C 1.37715 * 119.94511 * 179.68284 * 21 20 18 23 23 C 1.38837 * 120.67947 * 0.02562 * 22 21 20 24 24 C 1.37728 * 120.37173 * 0.02562 * 23 22 21 25 25 Cl 1.73600 * 120.18487 * 179.97438 * 24 23 22 26 26 C 1.39732 * 119.62789 * 359.97438 * 24 23 22 27 27 H 1.08994 * 109.47670 * 180.02562 * 1 2 3 28 28 H 1.09005 * 109.46882 * 300.00104 * 1 2 3 29 29 H 1.08996 * 109.47722 * 59.99591 * 1 2 3 30 30 H 1.09005 * 109.46882 * 239.99896 * 2 1 3 31 31 H 1.08998 * 109.47001 * 120.00230 * 2 1 3 32 32 H 1.09005 * 109.47262 * 60.00129 * 3 2 1 33 33 H 1.08998 * 109.47305 * 300.00044 * 3 2 1 34 34 H 1.09007 * 109.46756 * 59.29507 * 4 3 2 35 35 H 1.08999 * 109.47668 * 299.30121 * 4 3 2 36 36 H 1.08997 * 109.47654 * 59.21138 * 6 5 4 37 37 H 1.09004 * 109.47187 * 179.20648 * 6 5 4 38 38 H 0.97000 * 119.99654 * 180.02562 * 10 9 7 39 39 H 1.09007 * 109.47539 * 70.00784 * 15 5 4 40 40 H 1.09003 * 109.47721 * 310.00292 * 15 5 4 41 41 H 1.08004 * 125.04123 * 0.02562 * 17 16 15 42 42 H 1.08002 * 120.02618 * 359.66363 * 21 20 18 43 43 H 1.07994 * 119.66097 * 179.97438 * 22 21 20 44 44 H 1.08001 * 119.81544 * 179.97438 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 3.5700 1.4424 -0.0006 5 7 4.0598 2.8273 -0.0177 6 6 3.8384 3.4478 -1.3307 7 6 4.5877 2.6742 -2.3847 8 1 5.1075 1.7653 -2.1201 9 6 4.6098 3.1268 -3.6869 10 7 3.9764 4.2335 -4.0093 11 14 5.5380 2.1675 -4.9936 12 1 4.9715 0.7990 -5.0990 13 1 5.4077 2.8588 -6.3014 14 1 6.9725 2.0819 -4.6192 15 6 5.4776 2.8890 0.3614 16 6 5.8792 4.3262 0.5718 17 6 6.5373 5.1070 -0.2993 18 7 6.7213 6.3524 0.2376 19 1 7.1677 7.0902 -0.2064 20 6 6.1800 6.4012 1.5029 21 6 6.0940 7.3996 2.4682 22 6 5.4698 7.1431 3.6687 23 6 4.9227 5.8941 3.9300 24 6 4.9971 4.8906 2.9896 25 17 4.3120 3.3305 3.3216 26 6 5.6272 5.1354 1.7666 27 1 -0.3634 -1.0276 0.0005 28 1 -0.3633 0.5139 0.8900 29 1 -0.3634 0.5139 -0.8899 30 1 1.8933 -0.5139 -0.8900 31 1 1.8933 -0.5139 0.8899 32 1 1.6767 1.9563 0.8900 33 1 1.6767 1.9563 -0.8899 34 1 3.9329 0.9178 -0.8845 35 1 3.9338 0.9394 0.8953 36 1 2.7732 3.4388 -1.5619 37 1 4.1972 4.4769 -1.3114 38 1 3.9917 4.5517 -4.9255 39 1 6.0852 2.4545 -0.4325 40 1 5.6316 2.3298 1.2843 41 1 6.8687 4.7995 -1.2802 42 1 6.5166 8.3748 2.2763 43 1 5.4060 7.9212 4.4149 44 1 4.4368 5.7080 4.8764 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001140436957.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:47:52 Heat of formation + Delta-G solvation = 38.579807 kcal Electronic energy + Delta-G solvation = -25054.784261 eV Core-core repulsion = 21611.676168 eV Total energy + Delta-G solvation = -3443.108093 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 320.135 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -40.92209 -37.21490 -36.78332 -35.68528 -34.18212 -32.49243 -31.51906 -29.34231 -29.03779 -27.92911 -26.72962 -24.27647 -23.11121 -22.55139 -21.65752 -20.91166 -19.62028 -18.86117 -17.48074 -16.25324 -16.08763 -15.39072 -15.10480 -14.71342 -14.54170 -14.18399 -14.09179 -13.89425 -13.59231 -13.41829 -12.69415 -12.42484 -12.22473 -12.19573 -12.01416 -11.90764 -11.65140 -11.24047 -11.08309 -10.94917 -10.77879 -10.73227 -10.64730 -10.49490 -10.39966 -10.04623 -9.96164 -9.90853 -9.73814 -9.47998 -8.98751 -8.38655 -7.96936 -7.23208 -6.92572 -5.97956 -4.07103 1.27050 1.78671 2.63128 3.12926 3.26129 3.32362 3.34915 3.46983 4.03023 4.40713 5.00063 5.14632 5.16155 5.29512 5.30237 5.42868 5.45079 5.55612 5.62567 5.70666 5.87251 5.97391 6.00245 6.05435 6.20958 6.21677 6.25841 6.32697 6.42672 6.48128 6.54538 6.58374 6.63038 6.64921 6.79909 6.94320 7.02780 7.09229 7.15224 7.41575 7.47491 7.63174 7.86591 7.98767 8.22737 8.39651 8.50364 9.06143 9.58362 11.05033 Molecular weight = 320.14amu Principal moments of inertia in cm(-1) A = 0.009918 B = 0.005563 C = 0.003850 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2822.372952 B = 5032.319774 C = 7270.864495 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.121 4.121 3 C -0.108 4.108 4 C 0.063 3.937 5 N -0.529 5.529 6 C 0.187 3.813 7 C -0.541 4.541 8 H 0.055 0.945 9 C 0.066 3.934 10 N -0.891 5.891 11 Si 0.881 3.119 12 H -0.278 1.278 13 H -0.288 1.288 14 H -0.278 1.278 15 C 0.133 3.867 16 C -0.131 4.131 17 C 0.070 3.930 18 N -0.595 5.595 19 H 0.414 0.586 20 C 0.102 3.898 21 C -0.132 4.132 22 C -0.099 4.099 23 C -0.153 4.153 24 C 0.026 3.974 25 Cl -0.062 7.062 26 C -0.084 4.084 27 H 0.045 0.955 28 H 0.050 0.950 29 H 0.053 0.947 30 H 0.058 0.942 31 H 0.052 0.948 32 H 0.056 0.944 33 H 0.066 0.934 34 H 0.043 0.957 35 H 0.044 0.956 36 H 0.025 0.975 37 H 0.035 0.965 38 H 0.260 0.740 39 H 0.045 0.955 40 H 0.061 0.939 41 H 0.175 0.825 42 H 0.118 0.882 43 H 0.127 0.873 44 H 0.126 0.874 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.929 2.352 12.791 13.331 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.160 4.160 3 C -0.146 4.146 4 C -0.065 4.065 5 N -0.252 5.252 6 C 0.061 3.939 7 C -0.580 4.580 8 H 0.073 0.927 9 C -0.136 4.136 10 N -0.530 5.530 11 Si 0.709 3.291 12 H -0.203 1.203 13 H -0.214 1.214 14 H -0.204 1.204 15 C 0.004 3.996 16 C -0.138 4.138 17 C -0.056 4.056 18 N -0.198 5.198 19 H 0.250 0.750 20 C -0.006 4.006 21 C -0.153 4.153 22 C -0.118 4.118 23 C -0.173 4.173 24 C -0.001 4.001 25 Cl -0.032 7.032 26 C -0.090 4.090 27 H 0.064 0.936 28 H 0.069 0.931 29 H 0.072 0.928 30 H 0.077 0.923 31 H 0.071 0.929 32 H 0.075 0.925 33 H 0.085 0.915 34 H 0.061 0.939 35 H 0.063 0.937 36 H 0.043 0.957 37 H 0.054 0.946 38 H 0.070 0.930 39 H 0.063 0.937 40 H 0.079 0.921 41 H 0.192 0.808 42 H 0.136 0.864 43 H 0.145 0.855 44 H 0.144 0.856 Dipole moment (debyes) X Y Z Total from point charges 2.613 2.657 12.913 13.439 hybrid contribution 1.050 -0.613 -1.875 2.235 sum 3.663 2.043 11.038 11.808 Atomic orbital electron populations 1.21746 0.96548 1.00637 1.01677 1.21481 0.95208 0.98051 1.01223 1.21489 0.95929 0.94963 1.02229 1.21889 0.94596 0.90797 0.99218 1.62450 1.14969 1.15859 1.31946 1.19735 0.96507 0.95143 0.82493 1.21732 1.32688 1.09424 0.94155 0.92691 1.24915 0.95518 0.94849 0.98333 1.69952 1.42634 1.21564 1.18805 0.86842 0.80442 0.80449 0.81363 1.20341 1.21409 1.20418 1.20216 0.90643 0.89858 0.98863 1.20149 1.04244 0.97171 0.92223 1.21879 1.01597 0.83188 0.98907 1.41753 1.51875 1.12993 1.13157 0.74974 1.18104 1.00017 0.95462 0.87056 1.19979 1.04597 0.97464 0.93267 1.20563 0.98684 0.96282 0.96300 1.20681 1.04552 0.92699 0.99355 1.20281 0.98376 0.87591 0.93850 1.98355 1.83122 1.26845 1.94927 1.18814 1.02124 0.93869 0.94199 0.93557 0.93104 0.92775 0.92322 0.92890 0.92475 0.91494 0.93880 0.93729 0.95692 0.94649 0.93001 0.93651 0.92096 0.80769 0.86356 0.85543 0.85603 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.00 9.91 37.16 0.37 -1.63 16 2 C -0.12 -1.84 5.93 -26.73 -0.16 -2.00 16 3 C -0.11 -1.95 5.28 -26.73 -0.14 -2.10 16 4 C 0.06 1.23 4.80 -3.82 -0.02 1.22 16 5 N -0.53 -11.14 4.66 -237.52 -1.11 -12.25 16 6 C 0.19 4.66 4.79 -4.98 -0.02 4.63 16 7 C -0.54 -14.07 7.34 -34.44 -0.25 -14.32 16 8 H 0.06 1.43 5.95 -52.49 -0.31 1.12 16 9 C 0.07 1.77 5.46 -17.82 -0.10 1.68 16 10 N -0.89 -25.32 13.29 55.43 0.74 -24.58 16 11 Si 0.88 20.74 29.54 -169.99 -5.02 15.72 16 12 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 13 H -0.29 -6.81 7.11 56.52 0.40 -6.41 16 14 H -0.28 -6.42 7.11 56.52 0.40 -6.02 16 15 C 0.13 2.60 4.56 -4.98 -0.02 2.58 16 16 C -0.13 -2.48 4.92 -102.71 -0.51 -2.98 16 17 C 0.07 1.23 10.97 -16.72 -0.18 1.04 16 18 N -0.60 -8.78 6.07 -10.65 -0.06 -8.85 16 19 H 0.41 4.67 8.96 -40.82 -0.37 4.30 16 20 C 0.10 1.60 7.27 -83.99 -0.61 0.99 16 21 C -0.13 -1.72 10.07 -39.44 -0.40 -2.11 16 22 C -0.10 -1.21 10.01 -39.55 -0.40 -1.60 16 23 C -0.15 -2.09 9.81 -39.55 -0.39 -2.48 16 24 C 0.03 0.43 6.35 -39.21 -0.25 0.18 16 25 Cl -0.06 -0.99 27.03 -51.86 -1.40 -2.39 16 26 C -0.08 -1.49 6.21 -105.11 -0.65 -2.14 16 27 H 0.05 0.54 8.14 -51.93 -0.42 0.12 16 28 H 0.05 0.65 8.14 -51.93 -0.42 0.23 16 29 H 0.05 0.75 8.14 -51.93 -0.42 0.33 16 30 H 0.06 0.92 8.14 -51.93 -0.42 0.49 16 31 H 0.05 0.74 8.14 -51.93 -0.42 0.32 16 32 H 0.06 1.03 8.14 -51.93 -0.42 0.60 16 33 H 0.07 1.37 6.73 -51.93 -0.35 1.02 16 34 H 0.04 0.92 6.14 -51.93 -0.32 0.60 16 35 H 0.04 0.80 7.81 -51.93 -0.41 0.39 16 36 H 0.03 0.69 6.67 -51.93 -0.35 0.34 16 37 H 0.04 0.96 6.60 -51.93 -0.34 0.62 16 38 H 0.26 7.10 8.31 -40.82 -0.34 6.77 16 39 H 0.05 0.95 6.60 -51.93 -0.34 0.61 16 40 H 0.06 1.13 6.67 -51.93 -0.35 0.78 16 41 H 0.18 3.06 8.06 -52.48 -0.42 2.63 16 42 H 0.12 1.21 8.06 -52.49 -0.42 0.78 16 43 H 0.13 1.14 8.06 -52.49 -0.42 0.71 16 44 H 0.13 1.45 8.06 -52.49 -0.42 1.03 16 LS Contribution 367.10 15.07 5.53 5.53 Total: -1.00 -29.13 367.10 -11.55 -40.67 By element: Atomic # 1 Polarization: 11.69 SS G_CDS: -6.49 Total: 5.19 kcal Atomic # 6 Polarization: -15.32 SS G_CDS: -3.73 Total: -19.05 kcal Atomic # 7 Polarization: -45.24 SS G_CDS: -0.43 Total: -45.68 kcal Atomic # 14 Polarization: 20.74 SS G_CDS: -5.02 Total: 15.72 kcal Atomic # 17 Polarization: -0.99 SS G_CDS: -1.40 Total: -2.39 kcal Total LS contribution 5.53 Total: 5.53 kcal Total: -29.13 -11.55 -40.67 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001140436957.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 79.251 kcal (2) G-P(sol) polarization free energy of solvation -29.125 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 50.126 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.546 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.672 kcal (6) G-S(sol) free energy of system = (1) + (5) 38.580 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds