Wall clock time and date at job start Tue Mar 31 2020 12:21:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.32772 * 123.46068 * 2 1 4 4 S 1.75505 * 110.57833 * 180.02562 * 3 2 1 5 5 C 1.70448 * 92.44243 * 359.82321 * 4 3 2 6 6 C 1.36006 * 110.82118 * 0.31377 * 5 4 3 7 7 C 1.47186 * 123.46532 * 179.89307 * 6 5 4 8 8 O 1.21633 * 120.00184 * 179.70393 * 7 6 5 9 9 N 1.34779 * 119.99645 * 359.71247 * 7 6 5 10 10 C 1.46503 * 119.99627 * 179.97438 * 9 7 6 11 11 C 1.53006 * 109.46653 * 179.97438 * 10 9 7 12 12 C 1.50701 * 109.46625 * 180.02562 * 11 10 9 13 13 C 1.29449 * 117.69823 * 95.00277 * 12 11 10 14 14 C 1.50324 * 123.65415 * 181.13891 * 13 12 11 15 15 N 1.47112 * 109.10493 * 348.53287 * 14 13 12 16 16 C 1.36941 * 121.51266 * 223.16067 * 15 14 13 17 17 H 1.07998 * 119.99815 * 156.19092 * 16 15 14 18 18 C 1.38811 * 120.00024 * 336.18756 * 16 15 14 19 19 N 1.31620 * 119.99972 * 344.48080 * 18 16 15 20 20 Si 1.86793 * 120.00126 * 164.48826 * 18 16 15 21 21 H 1.48501 * 109.47376 * 59.99793 * 20 18 16 22 22 H 1.48500 * 109.47635 * 179.97438 * 20 18 16 23 23 H 1.48508 * 109.47046 * 300.00142 * 20 18 16 24 24 C 1.47344 * 117.11151 * 43.35151 * 15 14 13 25 25 C 1.49977 * 117.69151 * 274.97417 * 12 11 10 26 26 H 1.08994 * 109.47280 * 269.97919 * 1 2 3 27 27 H 1.09002 * 109.47097 * 29.97999 * 1 2 3 28 28 H 1.08997 * 109.46948 * 149.97672 * 1 2 3 29 29 H 1.08005 * 124.70885 * 0.05292 * 3 2 1 30 30 H 1.08004 * 124.59079 * 180.21135 * 5 4 3 31 31 H 0.96995 * 119.99900 * 359.97438 * 9 7 6 32 32 H 1.08998 * 109.46857 * 60.00329 * 10 9 7 33 33 H 1.08993 * 109.47459 * 299.99762 * 10 9 7 34 34 H 1.08992 * 109.46993 * 60.00173 * 11 10 9 35 35 H 1.09004 * 109.47004 * 299.99673 * 11 10 9 36 36 H 1.08002 * 118.17287 * 0.85287 * 13 12 11 37 37 H 1.08995 * 109.52453 * 108.64505 * 14 13 12 38 38 H 1.08998 * 109.52251 * 228.83655 * 14 13 12 39 39 H 0.97000 * 119.99856 * 179.97438 * 19 18 16 40 40 H 1.09000 * 109.77728 * 178.43237 * 24 15 14 41 41 H 1.08993 * 109.77708 * 57.62166 * 24 15 14 42 42 H 1.08991 * 109.31402 * 281.29457 * 25 12 11 43 43 H 1.08996 * 109.31268 * 40.72531 * 25 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2390 1.1077 0.0000 4 16 3.9499 0.7164 -0.0007 5 6 3.6411 -0.9599 0.0042 6 6 2.3033 -1.2050 -0.0006 7 6 1.7262 -2.5590 -0.0003 8 8 0.5187 -2.7055 0.0006 9 7 2.5358 -3.6365 -0.0009 10 6 1.9614 -4.9842 0.0000 11 6 3.0886 -6.0189 -0.0016 12 6 2.4977 -7.4053 -0.0013 13 6 2.3525 -7.9976 -1.1431 14 6 1.7559 -9.3684 -1.3005 15 7 1.6396 -9.9979 0.0240 16 6 1.9805 -11.3088 0.2259 17 1 2.2587 -11.6486 1.2126 18 6 1.9683 -12.2008 -0.8376 19 7 1.3496 -11.8839 -1.9553 20 14 2.8297 -13.8510 -0.6824 21 1 2.2291 -14.6196 0.4374 22 1 2.6705 -14.6135 -1.9467 23 1 4.2738 -13.6323 -0.4141 24 6 1.1360 -9.1579 1.1248 25 6 2.1200 -8.0016 1.3219 26 1 -0.3633 -0.0004 1.0276 27 1 -0.3633 0.8902 -0.5135 28 1 -0.3633 -0.8898 -0.5142 29 1 1.8374 2.1103 0.0008 30 1 4.4043 -1.7240 0.0088 31 1 3.4987 -3.5196 -0.0019 32 1 1.3455 -5.1172 -0.8894 33 1 1.3472 -5.1169 0.8905 34 1 3.7049 -5.8861 0.8875 35 1 3.7024 -5.8861 -0.8925 36 1 2.6738 -7.4761 -2.0327 37 1 0.7694 -9.2862 -1.7565 38 1 2.4017 -9.9761 -1.9344 39 1 1.3415 -12.5072 -2.6985 40 1 1.0721 -9.7477 2.0392 41 1 0.1520 -8.7653 0.8687 42 1 3.0163 -8.3718 1.8195 43 1 1.6562 -7.2356 1.9433 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001159739352.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:21:19 Heat of formation + Delta-G solvation = 24.536793 kcal Electronic energy + Delta-G solvation = -23554.810426 eV Core-core repulsion = 20113.137088 eV Total energy + Delta-G solvation = -3441.673338 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 320.130 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -40.16124 -38.03718 -37.34778 -35.43712 -33.66161 -31.82854 -31.03607 -29.81370 -28.74658 -27.80989 -25.54345 -24.39489 -23.02629 -22.48095 -21.06887 -20.90295 -19.10998 -18.09332 -17.60642 -17.14576 -16.09837 -15.68884 -15.40477 -15.00407 -14.60673 -14.36207 -14.08549 -13.70416 -13.61859 -13.54049 -13.41734 -13.25768 -12.92304 -12.60754 -12.36312 -12.20915 -12.12801 -11.96845 -11.56928 -11.41196 -11.23469 -11.00029 -10.88685 -10.71553 -10.32804 -10.25964 -9.93191 -9.79484 -9.53061 -9.30398 -9.15336 -8.66545 -8.63824 -7.91346 -6.71370 -5.77049 -3.15695 0.41056 1.18223 1.55107 1.69527 2.81776 3.16579 3.17715 3.39796 3.45201 3.46423 4.28885 4.51094 4.68251 4.83276 4.94060 5.10814 5.18510 5.26663 5.27446 5.36217 5.41268 5.54852 5.56785 5.65234 5.70315 5.79864 5.93738 6.01220 6.04243 6.15159 6.22144 6.27643 6.37141 6.41535 6.57150 6.80668 6.92374 7.24572 7.32018 7.36597 7.42896 7.76188 7.89620 8.08687 8.40850 9.22124 9.85041 10.44114 11.33349 Molecular weight = 320.13amu Principal moments of inertia in cm(-1) A = 0.034231 B = 0.002049 C = 0.002006 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 817.785793 B =13664.349939 C =13956.141017 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.102 4.102 2 C -0.050 4.050 3 C -0.246 4.246 4 S 0.181 5.819 5 C -0.212 4.212 6 C -0.150 4.150 7 C 0.573 3.427 8 O -0.530 6.530 9 N -0.724 5.724 10 C 0.125 3.875 11 C -0.092 4.092 12 C -0.142 4.142 13 C -0.146 4.146 14 C 0.196 3.804 15 N -0.596 5.596 16 C -0.245 4.245 17 H 0.068 0.932 18 C -0.002 4.002 19 N -0.910 5.910 20 Si 0.905 3.095 21 H -0.283 1.283 22 H -0.291 1.291 23 H -0.285 1.285 24 C 0.143 3.857 25 C -0.091 4.091 26 H 0.072 0.928 27 H 0.062 0.938 28 H 0.093 0.907 29 H 0.168 0.832 30 H 0.170 0.830 31 H 0.396 0.604 32 H 0.071 0.929 33 H 0.071 0.929 34 H 0.066 0.934 35 H 0.066 0.934 36 H 0.091 0.909 37 H 0.038 0.962 38 H 0.091 0.909 39 H 0.254 0.746 40 H 0.056 0.944 41 H 0.024 0.976 42 H 0.062 0.938 43 H 0.053 0.947 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.835 26.756 3.569 27.617 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C -0.061 4.061 3 C -0.381 4.381 4 S 0.448 5.552 5 C -0.350 4.350 6 C -0.168 4.168 7 C 0.359 3.641 8 O -0.408 6.408 9 N -0.376 5.376 10 C 0.002 3.998 11 C -0.130 4.130 12 C -0.143 4.143 13 C -0.165 4.165 14 C 0.071 3.929 15 N -0.319 5.319 16 C -0.374 4.374 17 H 0.086 0.914 18 C -0.200 4.200 19 N -0.555 5.555 20 Si 0.735 3.265 21 H -0.209 1.209 22 H -0.216 1.216 23 H -0.211 1.211 24 C 0.016 3.984 25 C -0.130 4.130 26 H 0.091 0.909 27 H 0.081 0.919 28 H 0.112 0.888 29 H 0.186 0.814 30 H 0.187 0.813 31 H 0.231 0.769 32 H 0.089 0.911 33 H 0.089 0.911 34 H 0.085 0.915 35 H 0.084 0.916 36 H 0.109 0.891 37 H 0.056 0.944 38 H 0.109 0.891 39 H 0.064 0.936 40 H 0.074 0.926 41 H 0.042 0.958 42 H 0.080 0.920 43 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges 6.283 27.378 3.416 28.297 hybrid contribution -0.144 -1.661 -0.058 1.668 sum 6.139 25.718 3.358 26.653 Atomic orbital electron populations 1.20674 0.88536 1.03823 1.03031 1.19904 0.97675 0.89824 0.98681 1.25321 0.96306 1.02686 1.13769 1.83017 1.05789 0.96768 1.69606 1.25653 0.99625 1.02916 1.06849 1.20246 0.92098 0.94527 1.09963 1.17579 0.86434 0.83512 0.76598 1.90765 1.13997 1.86397 1.49635 1.45978 1.09862 1.06366 1.75363 1.21471 0.96399 0.78911 1.02975 1.20913 0.96688 0.93243 1.02109 1.20211 1.04146 0.94023 0.95939 1.23124 0.97947 0.99432 0.96033 1.19725 0.98080 0.87049 0.88047 1.44165 1.75011 1.08102 1.04603 1.19141 1.38472 0.84316 0.95515 0.91432 1.24992 0.99788 0.97793 0.97456 1.70008 1.43938 1.36540 1.05019 0.86321 0.79708 0.83636 0.76822 1.20940 1.21646 1.21133 1.20957 0.93699 0.91323 0.92428 1.20759 1.00302 0.98099 0.93843 0.90936 0.91885 0.88800 0.81408 0.81275 0.76941 0.91076 0.91056 0.91488 0.91559 0.89086 0.94390 0.89123 0.93584 0.92556 0.95845 0.91966 0.92881 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -0.99 9.55 36.00 0.34 -0.64 16 2 C -0.05 -0.50 6.01 -104.06 -0.63 -1.12 16 3 C -0.25 -1.87 10.91 28.86 0.31 -1.56 16 4 S 0.18 1.16 23.02 -107.50 -2.48 -1.32 16 5 C -0.21 -1.64 10.38 29.93 0.31 -1.33 16 6 C -0.15 -1.58 5.98 -104.63 -0.63 -2.20 16 7 C 0.57 7.37 7.79 -12.63 -0.10 7.27 16 8 O -0.53 -8.58 14.21 5.25 0.07 -8.50 16 9 N -0.72 -7.96 5.53 -61.46 -0.34 -8.30 16 10 C 0.13 1.62 5.66 -4.04 -0.02 1.60 16 11 C -0.09 -1.18 5.32 -27.88 -0.15 -1.33 16 12 C -0.14 -2.45 5.11 -100.99 -0.52 -2.97 16 13 C -0.15 -2.83 9.47 -35.78 -0.34 -3.17 16 14 C 0.20 4.75 5.25 -5.04 -0.03 4.72 16 15 N -0.60 -15.20 3.01 -173.59 -0.52 -15.72 16 16 C -0.25 -6.79 9.71 -15.06 -0.15 -6.94 16 17 H 0.07 1.83 7.88 -52.49 -0.41 1.41 16 18 C 0.00 -0.07 5.01 -17.43 -0.09 -0.16 16 19 N -0.91 -26.52 11.07 55.49 0.61 -25.91 16 20 Si 0.91 21.85 29.58 -169.99 -5.03 16.82 16 21 H -0.28 -6.74 7.11 56.52 0.40 -6.34 16 22 H -0.29 -7.05 7.11 56.52 0.40 -6.65 16 23 H -0.28 -6.80 7.11 56.52 0.40 -6.40 16 24 C 0.14 3.04 6.57 -3.53 -0.02 3.01 16 25 C -0.09 -1.61 5.95 -28.18 -0.17 -1.78 16 26 H 0.07 0.68 8.14 -51.93 -0.42 0.25 16 27 H 0.06 0.47 8.13 -51.93 -0.42 0.05 16 28 H 0.09 1.13 6.02 -51.93 -0.31 0.82 16 29 H 0.17 0.89 8.06 -52.48 -0.42 0.47 16 30 H 0.17 0.88 7.01 -52.48 -0.37 0.51 16 31 H 0.40 3.17 6.97 -40.82 -0.28 2.89 16 32 H 0.07 1.04 8.14 -51.93 -0.42 0.62 16 33 H 0.07 1.01 8.09 -51.93 -0.42 0.59 16 34 H 0.07 0.78 8.11 -51.93 -0.42 0.36 16 35 H 0.07 0.79 7.78 -51.93 -0.40 0.39 16 36 H 0.09 1.56 7.73 -52.49 -0.41 1.16 16 37 H 0.04 0.99 8.14 -51.93 -0.42 0.57 16 38 H 0.09 2.43 6.40 -51.93 -0.33 2.10 16 39 H 0.25 7.18 8.31 -40.82 -0.34 6.84 16 40 H 0.06 1.16 7.96 -51.93 -0.41 0.75 16 41 H 0.02 0.50 8.14 -51.93 -0.42 0.08 16 42 H 0.06 1.11 8.14 -51.93 -0.42 0.69 16 43 H 0.05 0.82 8.08 -51.93 -0.42 0.40 16 LS Contribution 363.65 15.07 5.48 5.48 Total: -1.00 -32.15 363.65 -10.34 -42.49 By element: Atomic # 1 Polarization: 7.82 SS G_CDS: -6.29 Total: 1.53 kcal Atomic # 6 Polarization: -4.72 SS G_CDS: -1.86 Total: -6.57 kcal Atomic # 7 Polarization: -49.68 SS G_CDS: -0.25 Total: -49.92 kcal Atomic # 8 Polarization: -8.58 SS G_CDS: 0.07 Total: -8.50 kcal Atomic # 14 Polarization: 21.85 SS G_CDS: -5.03 Total: 16.82 kcal Atomic # 16 Polarization: 1.16 SS G_CDS: -2.48 Total: -1.32 kcal Total LS contribution 5.48 Total: 5.48 kcal Total: -32.15 -10.34 -42.49 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001159739352.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 67.027 kcal (2) G-P(sol) polarization free energy of solvation -32.149 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 34.879 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.342 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.491 kcal (6) G-S(sol) free energy of system = (1) + (5) 24.537 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds