Wall clock time and date at job start Tue Mar 31 2020 12:21:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.32772 * 123.46068 * 2 1 4 4 S 1.75505 * 110.57833 * 180.02562 * 3 2 1 5 5 C 1.70448 * 92.44243 * 359.82321 * 4 3 2 6 6 C 1.36006 * 110.82118 * 0.31377 * 5 4 3 7 7 C 1.47186 * 123.46532 * 179.89307 * 6 5 4 8 8 O 1.21633 * 120.00184 * 179.70393 * 7 6 5 9 9 N 1.34779 * 119.99645 * 359.71247 * 7 6 5 10 10 C 1.46503 * 119.99627 * 179.97438 * 9 7 6 11 11 C 1.53006 * 109.46653 * 179.97438 * 10 9 7 12 12 C 1.50701 * 109.46625 * 180.02562 * 11 10 9 13 13 C 1.29449 * 117.69823 * 95.00277 * 12 11 10 14 14 C 1.50324 * 123.65415 * 181.13891 * 13 12 11 15 15 N 1.47112 * 109.10493 * 348.53287 * 14 13 12 16 16 C 1.36941 * 121.51266 * 223.16067 * 15 14 13 17 17 H 1.07998 * 119.99815 * 156.19092 * 16 15 14 18 18 C 1.38811 * 120.00024 * 336.18756 * 16 15 14 19 19 N 1.31620 * 119.99972 * 344.48080 * 18 16 15 20 20 Si 1.86793 * 120.00126 * 164.48826 * 18 16 15 21 21 H 1.48501 * 109.47376 * 59.99793 * 20 18 16 22 22 H 1.48500 * 109.47635 * 179.97438 * 20 18 16 23 23 H 1.48508 * 109.47046 * 300.00142 * 20 18 16 24 24 C 1.47344 * 117.11151 * 43.35151 * 15 14 13 25 25 C 1.49977 * 117.69151 * 274.97417 * 12 11 10 26 26 H 1.08994 * 109.47280 * 269.97919 * 1 2 3 27 27 H 1.09002 * 109.47097 * 29.97999 * 1 2 3 28 28 H 1.08997 * 109.46948 * 149.97672 * 1 2 3 29 29 H 1.08005 * 124.70885 * 0.05292 * 3 2 1 30 30 H 1.08004 * 124.59079 * 180.21135 * 5 4 3 31 31 H 0.96995 * 119.99900 * 359.97438 * 9 7 6 32 32 H 1.08998 * 109.46857 * 60.00329 * 10 9 7 33 33 H 1.08993 * 109.47459 * 299.99762 * 10 9 7 34 34 H 1.08992 * 109.46993 * 60.00173 * 11 10 9 35 35 H 1.09004 * 109.47004 * 299.99673 * 11 10 9 36 36 H 1.08002 * 118.17287 * 0.85287 * 13 12 11 37 37 H 1.08995 * 109.52453 * 108.64505 * 14 13 12 38 38 H 1.08998 * 109.52251 * 228.83655 * 14 13 12 39 39 H 0.97000 * 119.99856 * 179.97438 * 19 18 16 40 40 H 1.09000 * 109.77728 * 178.43237 * 24 15 14 41 41 H 1.08993 * 109.77708 * 57.62166 * 24 15 14 42 42 H 1.08991 * 109.31402 * 281.29457 * 25 12 11 43 43 H 1.08996 * 109.31268 * 40.72531 * 25 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2390 1.1077 0.0000 4 16 3.9499 0.7164 -0.0007 5 6 3.6411 -0.9599 0.0042 6 6 2.3033 -1.2050 -0.0006 7 6 1.7262 -2.5590 -0.0003 8 8 0.5187 -2.7055 0.0006 9 7 2.5358 -3.6365 -0.0009 10 6 1.9614 -4.9842 0.0000 11 6 3.0886 -6.0189 -0.0016 12 6 2.4977 -7.4053 -0.0013 13 6 2.3525 -7.9976 -1.1431 14 6 1.7559 -9.3684 -1.3005 15 7 1.6396 -9.9979 0.0240 16 6 1.9805 -11.3088 0.2259 17 1 2.2587 -11.6486 1.2126 18 6 1.9683 -12.2008 -0.8376 19 7 1.3496 -11.8839 -1.9553 20 14 2.8297 -13.8510 -0.6824 21 1 2.2291 -14.6196 0.4374 22 1 2.6705 -14.6135 -1.9467 23 1 4.2738 -13.6323 -0.4141 24 6 1.1360 -9.1579 1.1248 25 6 2.1200 -8.0016 1.3219 26 1 -0.3633 -0.0004 1.0276 27 1 -0.3633 0.8902 -0.5135 28 1 -0.3633 -0.8898 -0.5142 29 1 1.8374 2.1103 0.0008 30 1 4.4043 -1.7240 0.0088 31 1 3.4987 -3.5196 -0.0019 32 1 1.3455 -5.1172 -0.8894 33 1 1.3472 -5.1169 0.8905 34 1 3.7049 -5.8861 0.8875 35 1 3.7024 -5.8861 -0.8925 36 1 2.6738 -7.4761 -2.0327 37 1 0.7694 -9.2862 -1.7565 38 1 2.4017 -9.9761 -1.9344 39 1 1.3415 -12.5072 -2.6985 40 1 1.0721 -9.7477 2.0392 41 1 0.1520 -8.7653 0.8687 42 1 3.0163 -8.3718 1.8195 43 1 1.6562 -7.2356 1.9433 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001159739352.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:21:18 Heat of formation + Delta-G solvation = 5.164878 kcal Electronic energy + Delta-G solvation = -23555.650455 eV Core-core repulsion = 20113.137088 eV Total energy + Delta-G solvation = -3442.513367 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 320.130 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -41.05495 -39.51861 -38.17975 -36.71881 -35.18917 -33.30901 -32.14259 -31.45711 -30.10262 -28.59032 -27.13799 -25.41312 -24.55900 -23.89400 -22.51698 -21.89352 -19.93639 -19.45161 -18.66196 -18.00627 -17.52420 -17.04326 -16.61622 -16.56484 -15.74411 -15.54636 -15.42541 -15.16515 -15.08157 -14.49246 -14.38597 -14.20585 -14.08884 -13.85558 -13.56491 -13.37128 -13.21308 -13.01986 -12.86741 -12.78462 -12.76166 -12.57590 -12.36396 -12.20822 -11.89693 -11.83131 -11.67766 -11.24887 -10.86019 -10.68120 -10.20020 -9.84497 -9.49524 -9.23682 -8.76199 -7.88306 -5.30594 -0.21228 0.64555 0.96593 0.97314 1.41045 1.46354 1.49096 1.55977 2.20319 2.31471 2.50908 3.28193 3.65728 3.73652 3.90259 3.96081 4.10813 4.14768 4.21435 4.28983 4.40507 4.54489 4.58335 4.65097 4.68126 4.72733 4.81066 4.86022 4.90547 4.96810 4.99429 5.07784 5.16887 5.22997 5.28576 5.38705 5.41566 5.49739 5.57886 5.60127 5.87355 6.27803 6.33124 6.52335 7.12389 7.20663 7.82412 8.37880 9.20236 Molecular weight = 320.13amu Principal moments of inertia in cm(-1) A = 0.034231 B = 0.002049 C = 0.002006 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 817.785793 B =13664.349939 C =13956.141017 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.098 4.098 2 C -0.080 4.080 3 C -0.247 4.247 4 S 0.244 5.756 5 C -0.206 4.206 6 C -0.184 4.184 7 C 0.569 3.431 8 O -0.576 6.576 9 N -0.711 5.711 10 C 0.134 3.866 11 C -0.078 4.078 12 C -0.120 4.120 13 C -0.174 4.174 14 C 0.206 3.794 15 N -0.615 5.615 16 C -0.258 4.258 17 H 0.072 0.928 18 C -0.058 4.058 19 N -0.942 5.942 20 Si 0.973 3.027 21 H -0.275 1.275 22 H -0.294 1.294 23 H -0.277 1.277 24 C 0.135 3.865 25 C -0.087 4.087 26 H 0.067 0.933 27 H 0.081 0.919 28 H 0.063 0.937 29 H 0.190 0.810 30 H 0.196 0.804 31 H 0.414 0.586 32 H 0.050 0.950 33 H 0.060 0.940 34 H 0.094 0.906 35 H 0.084 0.916 36 H 0.113 0.887 37 H 0.002 0.998 38 H 0.056 0.944 39 H 0.250 0.750 40 H 0.059 0.941 41 H 0.016 0.984 42 H 0.069 0.931 43 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.753 29.172 4.929 30.853 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C -0.091 4.091 3 C -0.381 4.381 4 S 0.512 5.488 5 C -0.344 4.344 6 C -0.203 4.203 7 C 0.356 3.644 8 O -0.457 6.457 9 N -0.363 5.363 10 C 0.010 3.990 11 C -0.116 4.116 12 C -0.121 4.121 13 C -0.193 4.193 14 C 0.081 3.919 15 N -0.340 5.340 16 C -0.388 4.388 17 H 0.090 0.910 18 C -0.253 4.253 19 N -0.589 5.589 20 Si 0.800 3.200 21 H -0.201 1.201 22 H -0.221 1.221 23 H -0.203 1.203 24 C 0.009 3.991 25 C -0.126 4.126 26 H 0.086 0.914 27 H 0.100 0.900 28 H 0.082 0.918 29 H 0.207 0.793 30 H 0.213 0.787 31 H 0.251 0.749 32 H 0.068 0.932 33 H 0.078 0.922 34 H 0.112 0.888 35 H 0.103 0.897 36 H 0.131 0.869 37 H 0.020 0.980 38 H 0.074 0.926 39 H 0.059 0.941 40 H 0.078 0.922 41 H 0.034 0.966 42 H 0.088 0.912 43 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges 9.239 29.825 4.805 31.591 hybrid contribution -1.035 -2.293 -0.405 2.548 sum 8.204 27.532 4.400 29.064 Atomic orbital electron populations 1.20577 0.89339 1.03227 1.02585 1.19996 0.97678 0.90639 1.00744 1.25641 0.97428 1.03043 1.12033 1.82881 1.03833 0.94822 1.67309 1.26039 0.99036 1.04940 1.04389 1.20111 0.93366 0.93303 1.13483 1.18029 0.86018 0.84728 0.75631 1.90745 1.15977 1.87131 1.51831 1.45756 1.10671 1.05158 1.74749 1.21187 0.96153 0.80096 1.01527 1.20804 0.96581 0.89802 1.04374 1.20562 1.01104 0.95653 0.94740 1.22826 1.00909 0.97443 0.98171 1.19374 0.96002 0.89431 0.87110 1.44465 1.75490 1.08158 1.05844 1.19511 1.38014 0.85549 0.95738 0.91049 1.25820 1.00733 1.01447 0.97264 1.70194 1.45424 1.37601 1.05655 0.85259 0.78734 0.79369 0.76598 1.20051 1.22062 1.20316 1.21156 0.94437 0.92237 0.91250 1.20715 0.99680 0.97397 0.94760 0.91397 0.89999 0.91783 0.79317 0.78712 0.74891 0.93196 0.92167 0.88773 0.89747 0.86906 0.98028 0.92605 0.94134 0.92230 0.96562 0.91217 0.89649 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.95 9.55 71.24 0.68 -1.27 16 2 C -0.08 -1.51 6.01 -19.46 -0.12 -1.63 16 3 C -0.25 -3.11 10.91 66.64 0.73 -2.39 16 4 S 0.24 2.19 23.02 -56.49 -1.30 0.89 16 5 C -0.21 -2.50 10.38 67.30 0.70 -1.80 16 6 C -0.18 -3.62 5.98 -19.87 -0.12 -3.74 16 7 C 0.57 14.35 7.79 86.59 0.67 15.02 16 8 O -0.58 -19.31 14.21 -4.14 -0.06 -19.37 16 9 N -0.71 -14.20 5.53 -466.59 -2.58 -16.77 16 10 C 0.13 3.25 5.66 86.38 0.49 3.74 16 11 C -0.08 -1.74 5.32 29.85 0.16 -1.59 16 12 C -0.12 -3.90 5.11 -15.13 -0.08 -3.98 16 13 C -0.17 -6.77 9.47 27.11 0.26 -6.51 16 14 C 0.21 10.47 5.25 85.40 0.45 10.92 16 15 N -0.62 -32.22 3.01 -703.11 -2.12 -34.34 16 16 C -0.26 -14.58 9.71 84.03 0.82 -13.77 16 17 H 0.07 3.88 7.88 -2.91 -0.02 3.85 16 18 C -0.06 -3.32 5.01 84.86 0.43 -2.90 16 19 N -0.94 -57.22 11.07 21.65 0.24 -56.98 16 20 Si 0.97 45.66 29.58 68.60 2.03 47.69 16 21 H -0.27 -12.42 7.11 99.48 0.71 -11.71 16 22 H -0.29 -13.88 7.11 99.48 0.71 -13.18 16 23 H -0.28 -12.56 7.11 99.48 0.71 -11.86 16 24 C 0.13 5.74 6.57 86.25 0.57 6.31 16 25 C -0.09 -2.90 5.95 29.66 0.18 -2.72 16 26 H 0.07 1.33 8.14 -2.39 -0.02 1.31 16 27 H 0.08 1.20 8.13 -2.39 -0.02 1.18 16 28 H 0.06 1.66 6.02 -2.39 -0.01 1.64 16 29 H 0.19 1.43 8.06 -2.91 -0.02 1.40 16 30 H 0.20 1.16 7.01 -2.91 -0.02 1.14 16 31 H 0.41 5.17 6.97 -92.71 -0.65 4.53 16 32 H 0.05 1.44 8.14 -2.39 -0.02 1.42 16 33 H 0.06 1.61 8.09 -2.39 -0.02 1.59 16 34 H 0.09 1.70 8.11 -2.39 -0.02 1.68 16 35 H 0.08 1.67 7.78 -2.38 -0.02 1.65 16 36 H 0.11 3.82 7.73 -2.91 -0.02 3.80 16 37 H 0.00 0.11 8.14 -2.39 -0.02 0.09 16 38 H 0.06 3.17 6.40 -2.39 -0.02 3.15 16 39 H 0.25 14.68 8.31 -92.71 -0.77 13.91 16 40 H 0.06 2.45 7.96 -2.39 -0.02 2.43 16 41 H 0.02 0.71 8.14 -2.39 -0.02 0.69 16 42 H 0.07 2.29 8.14 -2.39 -0.02 2.27 16 43 H 0.09 2.35 8.08 -2.39 -0.02 2.33 16 Total: -1.00 -74.23 363.65 2.39 -71.84 By element: Atomic # 1 Polarization: 12.97 SS G_CDS: 0.37 Total: 13.34 kcal Atomic # 6 Polarization: -12.11 SS G_CDS: 5.80 Total: -6.30 kcal Atomic # 7 Polarization: -103.64 SS G_CDS: -4.45 Total: -108.09 kcal Atomic # 8 Polarization: -19.31 SS G_CDS: -0.06 Total: -19.37 kcal Atomic # 14 Polarization: 45.66 SS G_CDS: 2.03 Total: 47.69 kcal Atomic # 16 Polarization: 2.19 SS G_CDS: -1.30 Total: 0.89 kcal Total: -74.23 2.39 -71.84 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001159739352.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 77.007 kcal (2) G-P(sol) polarization free energy of solvation -74.235 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 2.772 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.393 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.842 kcal (6) G-S(sol) free energy of system = (1) + (5) 5.165 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds