Wall clock time and date at job start Tue Mar 31 2020 12:16:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.33820 * 122.45063 * 2 1 4 4 S 1.70615 * 110.95840 * 179.78523 * 3 2 1 5 5 C 1.75830 * 91.56043 * 0.31065 * 4 3 2 6 6 C 1.46587 * 125.45674 * 179.97438 * 5 4 3 7 7 O 1.21699 * 119.99846 * 179.68840 * 6 5 4 8 8 N 1.34777 * 119.99789 * 359.69165 * 6 5 4 9 9 C 1.46504 * 119.99778 * 180.02562 * 8 6 5 10 10 C 1.52998 * 109.46899 * 179.97438 * 9 8 6 11 11 C 1.50701 * 109.46807 * 179.97438 * 10 9 8 12 12 C 1.29454 * 117.69515 * 95.00377 * 11 10 9 13 13 C 1.50316 * 123.65460 * 180.85752 * 12 11 10 14 14 N 1.47012 * 109.16472 * 349.02174 * 13 12 11 15 15 C 1.36937 * 121.37477 * 222.96977 * 14 13 12 16 16 H 1.07997 * 120.00386 * 155.96447 * 15 14 13 17 17 C 1.38818 * 120.00162 * 335.96978 * 15 14 13 18 18 N 1.31616 * 119.99424 * 344.51716 * 17 15 14 19 19 Si 1.86793 * 120.00033 * 164.51677 * 17 15 14 20 20 H 1.48507 * 109.47179 * 90.00114 * 19 17 15 21 21 H 1.48501 * 109.47307 * 209.99995 * 19 17 15 22 22 H 1.48499 * 109.47498 * 330.00025 * 19 17 15 23 23 C 1.47334 * 117.25050 * 42.94171 * 14 13 12 24 24 C 1.49972 * 117.69467 * 274.73759 * 11 10 9 25 25 C 1.36649 * 109.08267 * 359.69395 * 5 4 3 26 26 H 1.08992 * 109.47021 * 269.97225 * 1 2 3 27 27 H 1.09000 * 109.47530 * 29.97582 * 1 2 3 28 28 H 1.09002 * 109.46885 * 149.97077 * 1 2 3 29 29 H 1.08006 * 124.51703 * 0.02562 * 3 2 1 30 30 H 0.97001 * 120.00105 * 359.97438 * 8 6 5 31 31 H 1.09007 * 109.46684 * 59.99855 * 9 8 6 32 32 H 1.08991 * 109.47025 * 299.99700 * 9 8 6 33 33 H 1.08997 * 109.47374 * 60.00106 * 10 9 8 34 34 H 1.09001 * 109.47335 * 300.00131 * 10 9 8 35 35 H 1.08004 * 118.17621 * 0.87886 * 12 11 10 36 36 H 1.09004 * 109.52565 * 108.92300 * 13 12 11 37 37 H 1.09004 * 109.52817 * 229.11696 * 13 12 11 38 38 H 0.97005 * 119.99607 * 179.97438 * 18 17 15 39 39 H 1.09009 * 109.77415 * 57.81374 * 23 14 13 40 40 H 1.09001 * 109.77952 * 178.61777 * 23 14 13 41 41 H 1.09000 * 109.31400 * 281.29459 * 24 11 10 42 42 H 1.08997 * 109.31188 * 40.72365 * 24 11 10 43 43 H 1.08004 * 123.34886 * 180.24693 * 25 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2250 1.1292 0.0000 4 16 3.8970 0.7893 0.0060 5 6 3.5937 -0.9426 -0.0010 6 6 4.6232 -1.9861 -0.0006 7 8 4.3002 -3.1595 -0.0001 8 7 5.9274 -1.6461 -0.0008 9 6 6.9563 -2.6890 -0.0010 10 6 8.3413 -2.0390 -0.0018 11 6 9.3996 -3.1118 -0.0014 12 6 9.8930 -3.4707 -1.1431 13 6 10.9393 -4.5385 -1.2998 14 7 11.4726 -4.8897 0.0244 15 6 12.8146 -5.0716 0.2272 16 1 13.2339 -4.9433 1.2141 17 6 13.6362 -5.4208 -0.8359 18 7 13.1090 -5.8720 -1.9543 19 14 15.4897 -5.2505 -0.6789 20 1 16.0597 -6.5142 -0.1465 21 1 16.0756 -4.9670 -2.0137 22 1 15.8076 -4.1348 0.2482 23 6 10.5036 -5.0373 1.1244 24 6 9.8114 -3.6841 1.3223 25 6 2.2446 -1.1600 -0.0006 26 1 -0.3633 -0.0005 1.0276 27 1 -0.3634 0.8902 -0.5134 28 1 -0.3633 -0.8897 -0.5143 29 1 1.8024 2.1232 0.0004 30 1 6.1848 -0.7108 -0.0016 31 1 6.8454 -3.3085 -0.8911 32 1 6.8458 -3.3085 0.8889 33 1 8.4523 -1.4192 0.8879 34 1 8.4515 -1.4197 -0.8920 35 1 9.5332 -2.9750 -2.0327 36 1 10.4933 -5.4211 -1.7585 37 1 11.7469 -4.1676 -1.9310 38 1 13.6831 -6.1157 -2.6973 39 1 9.7670 -5.7986 0.8673 40 1 11.0243 -5.3209 2.0390 41 1 10.4953 -2.9940 1.8164 42 1 8.9283 -3.8208 1.9463 43 1 1.8020 -2.1451 -0.0004 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001160036572.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:16:32 Heat of formation + Delta-G solvation = 23.982023 kcal Electronic energy + Delta-G solvation = -23265.839604 eV Core-core repulsion = 19824.142210 eV Total energy + Delta-G solvation = -3441.697395 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 320.130 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -39.96507 -38.43990 -37.81521 -35.44438 -33.59564 -31.71258 -31.12917 -29.82895 -28.83611 -28.11421 -25.75381 -24.36471 -22.91669 -22.38749 -21.07395 -20.73042 -19.34223 -18.63658 -17.59049 -16.51295 -16.24196 -15.75640 -15.54703 -15.03908 -14.81687 -14.46530 -14.05839 -13.91920 -13.81665 -13.56807 -13.53056 -13.31403 -12.66892 -12.55624 -12.39982 -12.34841 -12.18427 -12.00274 -11.57208 -11.41708 -11.30595 -11.00695 -10.89888 -10.70420 -10.37387 -10.29365 -10.14189 -9.79428 -9.53575 -9.34878 -9.11362 -8.79220 -8.63612 -7.91075 -6.70269 -5.76794 -3.15258 0.16089 1.10058 1.50171 2.00019 2.78101 2.99659 3.11009 3.39063 3.45698 3.48034 4.45781 4.51498 4.55590 4.77533 4.91297 5.10478 5.14813 5.16400 5.20781 5.27244 5.41762 5.47877 5.54447 5.57743 5.65136 5.79410 5.91927 6.00572 6.00785 6.04752 6.15489 6.22300 6.28757 6.41256 6.57544 6.80908 6.93019 7.23759 7.26056 7.35216 7.42954 7.77037 7.90051 7.96878 8.41330 9.22745 9.85752 10.44515 11.33628 Molecular weight = 320.13amu Principal moments of inertia in cm(-1) A = 0.039985 B = 0.001994 C = 0.001970 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 700.091231 B =14035.725799 C =14210.231534 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.094 4.094 2 C -0.117 4.117 3 C -0.236 4.236 4 S 0.198 5.802 5 C -0.260 4.260 6 C 0.587 3.413 7 O -0.527 6.527 8 N -0.725 5.725 9 C 0.125 3.875 10 C -0.092 4.092 11 C -0.143 4.143 12 C -0.145 4.145 13 C 0.196 3.804 14 N -0.596 5.596 15 C -0.245 4.245 16 H 0.068 0.932 17 C -0.003 4.003 18 N -0.909 5.909 19 Si 0.904 3.096 20 H -0.287 1.287 21 H -0.290 1.290 22 H -0.280 1.280 23 C 0.143 3.857 24 C -0.091 4.091 25 C -0.054 4.054 26 H 0.071 0.929 27 H 0.066 0.934 28 H 0.069 0.931 29 H 0.168 0.832 30 H 0.396 0.604 31 H 0.072 0.928 32 H 0.073 0.927 33 H 0.067 0.933 34 H 0.067 0.933 35 H 0.091 0.909 36 H 0.038 0.962 37 H 0.091 0.909 38 H 0.253 0.747 39 H 0.024 0.976 40 H 0.056 0.944 41 H 0.063 0.937 42 H 0.052 0.948 43 H 0.154 0.846 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.837 16.493 3.626 28.402 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.130 4.130 3 C -0.374 4.374 4 S 0.467 5.533 5 C -0.381 4.381 6 C 0.372 3.628 7 O -0.405 6.405 8 N -0.376 5.376 9 C 0.002 3.998 10 C -0.130 4.130 11 C -0.144 4.144 12 C -0.165 4.165 13 C 0.071 3.929 14 N -0.319 5.319 15 C -0.374 4.374 16 H 0.086 0.914 17 C -0.200 4.200 18 N -0.555 5.555 19 Si 0.734 3.266 20 H -0.215 1.215 21 H -0.216 1.216 22 H -0.206 1.206 23 C 0.016 3.984 24 C -0.130 4.130 25 C -0.088 4.088 26 H 0.089 0.911 27 H 0.085 0.915 28 H 0.088 0.912 29 H 0.186 0.814 30 H 0.230 0.770 31 H 0.091 0.909 32 H 0.091 0.909 33 H 0.086 0.914 34 H 0.085 0.915 35 H 0.109 0.891 36 H 0.056 0.944 37 H 0.109 0.891 38 H 0.063 0.937 39 H 0.042 0.958 40 H 0.074 0.926 41 H 0.081 0.919 42 H 0.071 0.929 43 H 0.172 0.828 Dipole moment (debyes) X Y Z Total from point charges -21.588 16.493 3.487 27.390 hybrid contribution -0.305 -0.124 -0.097 0.343 sum -21.892 16.369 3.390 27.545 Atomic orbital electron populations 1.20521 0.89289 1.02988 1.02526 1.18806 0.98046 0.91490 1.04645 1.25137 0.98458 1.03394 1.10372 1.82993 1.04154 0.98238 1.67944 1.24667 0.98093 0.97190 1.18104 1.16949 0.81712 0.87396 0.76712 1.90855 1.81638 1.18168 1.49806 1.45987 1.05582 1.10593 1.75442 1.21511 0.85414 0.89720 1.03133 1.20921 0.92268 0.97577 1.02246 1.20212 0.98725 0.99453 0.95963 1.23129 0.98518 0.98814 0.96045 1.19709 0.93074 0.92063 0.88034 1.44132 1.02512 1.80516 1.04723 1.19171 0.82458 1.40283 0.95493 0.91439 1.24992 0.98209 0.99400 0.97437 1.70020 1.33913 1.46551 1.04986 0.86265 0.85565 0.77907 0.76865 1.21452 1.21601 1.20587 1.20992 0.92099 0.92881 0.92402 1.20794 0.98954 0.99471 0.93804 1.20690 0.91009 1.00077 0.96979 0.91053 0.91461 0.91164 0.81419 0.76990 0.90917 0.90894 0.91386 0.91457 0.89052 0.94389 0.89142 0.93651 0.95778 0.92558 0.91898 0.92902 0.82833 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -0.49 10.13 36.00 0.36 -0.13 16 2 C -0.12 -0.90 5.78 -106.46 -0.62 -1.51 16 3 C -0.24 -1.61 10.67 29.18 0.31 -1.29 16 4 S 0.20 1.46 22.16 -107.50 -2.38 -0.92 16 5 C -0.26 -2.76 6.45 -36.79 -0.24 -3.00 16 6 C 0.59 7.78 7.78 -12.89 -0.10 7.68 16 7 O -0.53 -8.98 16.84 5.19 0.09 -8.89 16 8 N -0.72 -8.33 5.55 -61.65 -0.34 -8.67 16 9 C 0.12 1.65 5.66 -4.04 -0.02 1.63 16 10 C -0.09 -1.20 5.32 -27.88 -0.15 -1.35 16 11 C -0.14 -2.46 5.11 -100.99 -0.52 -2.98 16 12 C -0.15 -2.83 9.47 -35.78 -0.34 -3.16 16 13 C 0.20 4.76 5.23 -5.10 -0.03 4.73 16 14 N -0.60 -15.18 3.01 -173.56 -0.52 -15.70 16 15 C -0.24 -6.78 9.71 -15.06 -0.15 -6.93 16 16 H 0.07 1.83 7.88 -52.49 -0.41 1.41 16 17 C 0.00 -0.07 5.01 -17.43 -0.09 -0.16 16 18 N -0.91 -26.52 11.08 55.49 0.61 -25.90 16 19 Si 0.90 21.84 29.58 -169.99 -5.03 16.81 16 20 H -0.29 -6.94 7.11 56.52 0.40 -6.54 16 21 H -0.29 -7.03 7.11 56.52 0.40 -6.63 16 22 H -0.28 -6.65 7.11 56.52 0.40 -6.24 16 23 C 0.14 3.04 6.59 -3.44 -0.02 3.02 16 24 C -0.09 -1.62 5.95 -28.09 -0.17 -1.78 16 25 C -0.05 -0.53 9.80 -40.44 -0.40 -0.93 16 26 H 0.07 0.33 8.14 -51.93 -0.42 -0.10 16 27 H 0.07 0.27 8.12 -51.93 -0.42 -0.15 16 28 H 0.07 0.34 8.13 -51.93 -0.42 -0.08 16 29 H 0.17 0.74 8.06 -52.48 -0.42 0.31 16 30 H 0.40 3.51 7.59 -40.82 -0.31 3.21 16 31 H 0.07 1.07 8.14 -51.92 -0.42 0.65 16 32 H 0.07 1.04 8.11 -51.93 -0.42 0.62 16 33 H 0.07 0.80 8.11 -51.93 -0.42 0.38 16 34 H 0.07 0.81 7.78 -51.93 -0.40 0.41 16 35 H 0.09 1.57 7.73 -52.48 -0.41 1.16 16 36 H 0.04 0.99 8.14 -51.93 -0.42 0.57 16 37 H 0.09 2.42 6.41 -51.93 -0.33 2.09 16 38 H 0.25 7.14 8.31 -40.82 -0.34 6.80 16 39 H 0.02 0.52 8.14 -51.92 -0.42 0.09 16 40 H 0.06 1.16 7.96 -51.93 -0.41 0.75 16 41 H 0.06 1.13 8.14 -51.93 -0.42 0.70 16 42 H 0.05 0.81 8.10 -51.93 -0.42 0.39 16 43 H 0.15 1.48 8.06 -52.48 -0.42 1.06 16 LS Contribution 369.24 15.07 5.56 5.56 Total: -1.00 -32.38 369.24 -10.64 -43.02 By element: Atomic # 1 Polarization: 7.34 SS G_CDS: -6.48 Total: 0.86 kcal Atomic # 6 Polarization: -4.02 SS G_CDS: -2.15 Total: -6.17 kcal Atomic # 7 Polarization: -50.03 SS G_CDS: -0.25 Total: -50.28 kcal Atomic # 8 Polarization: -8.98 SS G_CDS: 0.09 Total: -8.89 kcal Atomic # 14 Polarization: 21.84 SS G_CDS: -5.03 Total: 16.81 kcal Atomic # 16 Polarization: 1.46 SS G_CDS: -2.38 Total: -0.92 kcal Total LS contribution 5.56 Total: 5.56 kcal Total: -32.38 -10.64 -43.02 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001160036572.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 67.000 kcal (2) G-P(sol) polarization free energy of solvation -32.381 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 34.619 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.637 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.018 kcal (6) G-S(sol) free energy of system = (1) + (5) 23.982 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds