Wall clock time and date at job start Tue Mar 31 2020 12:16:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.33820 * 122.45063 * 2 1 4 4 S 1.70615 * 110.95840 * 179.78523 * 3 2 1 5 5 C 1.75830 * 91.56043 * 0.31065 * 4 3 2 6 6 C 1.46587 * 125.45674 * 179.97438 * 5 4 3 7 7 O 1.21699 * 119.99846 * 179.68840 * 6 5 4 8 8 N 1.34777 * 119.99789 * 359.69165 * 6 5 4 9 9 C 1.46504 * 119.99778 * 180.02562 * 8 6 5 10 10 C 1.52998 * 109.46899 * 179.97438 * 9 8 6 11 11 C 1.50701 * 109.46807 * 179.97438 * 10 9 8 12 12 C 1.29454 * 117.69515 * 95.00377 * 11 10 9 13 13 C 1.50316 * 123.65460 * 180.85752 * 12 11 10 14 14 N 1.47012 * 109.16472 * 349.02174 * 13 12 11 15 15 C 1.36937 * 121.37477 * 222.96977 * 14 13 12 16 16 H 1.07997 * 120.00386 * 155.96447 * 15 14 13 17 17 C 1.38818 * 120.00162 * 335.96978 * 15 14 13 18 18 N 1.31616 * 119.99424 * 344.51716 * 17 15 14 19 19 Si 1.86793 * 120.00033 * 164.51677 * 17 15 14 20 20 H 1.48507 * 109.47179 * 90.00114 * 19 17 15 21 21 H 1.48501 * 109.47307 * 209.99995 * 19 17 15 22 22 H 1.48499 * 109.47498 * 330.00025 * 19 17 15 23 23 C 1.47334 * 117.25050 * 42.94171 * 14 13 12 24 24 C 1.49972 * 117.69467 * 274.73759 * 11 10 9 25 25 C 1.36649 * 109.08267 * 359.69395 * 5 4 3 26 26 H 1.08992 * 109.47021 * 269.97225 * 1 2 3 27 27 H 1.09000 * 109.47530 * 29.97582 * 1 2 3 28 28 H 1.09002 * 109.46885 * 149.97077 * 1 2 3 29 29 H 1.08006 * 124.51703 * 0.02562 * 3 2 1 30 30 H 0.97001 * 120.00105 * 359.97438 * 8 6 5 31 31 H 1.09007 * 109.46684 * 59.99855 * 9 8 6 32 32 H 1.08991 * 109.47025 * 299.99700 * 9 8 6 33 33 H 1.08997 * 109.47374 * 60.00106 * 10 9 8 34 34 H 1.09001 * 109.47335 * 300.00131 * 10 9 8 35 35 H 1.08004 * 118.17621 * 0.87886 * 12 11 10 36 36 H 1.09004 * 109.52565 * 108.92300 * 13 12 11 37 37 H 1.09004 * 109.52817 * 229.11696 * 13 12 11 38 38 H 0.97005 * 119.99607 * 179.97438 * 18 17 15 39 39 H 1.09009 * 109.77415 * 57.81374 * 23 14 13 40 40 H 1.09001 * 109.77952 * 178.61777 * 23 14 13 41 41 H 1.09000 * 109.31400 * 281.29459 * 24 11 10 42 42 H 1.08997 * 109.31188 * 40.72365 * 24 11 10 43 43 H 1.08004 * 123.34886 * 180.24693 * 25 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2250 1.1292 0.0000 4 16 3.8970 0.7893 0.0060 5 6 3.5937 -0.9426 -0.0010 6 6 4.6232 -1.9861 -0.0006 7 8 4.3002 -3.1595 -0.0001 8 7 5.9274 -1.6461 -0.0008 9 6 6.9563 -2.6890 -0.0010 10 6 8.3413 -2.0390 -0.0018 11 6 9.3996 -3.1118 -0.0014 12 6 9.8930 -3.4707 -1.1431 13 6 10.9393 -4.5385 -1.2998 14 7 11.4726 -4.8897 0.0244 15 6 12.8146 -5.0716 0.2272 16 1 13.2339 -4.9433 1.2141 17 6 13.6362 -5.4208 -0.8359 18 7 13.1090 -5.8720 -1.9543 19 14 15.4897 -5.2505 -0.6789 20 1 16.0597 -6.5142 -0.1465 21 1 16.0756 -4.9670 -2.0137 22 1 15.8076 -4.1348 0.2482 23 6 10.5036 -5.0373 1.1244 24 6 9.8114 -3.6841 1.3223 25 6 2.2446 -1.1600 -0.0006 26 1 -0.3633 -0.0005 1.0276 27 1 -0.3634 0.8902 -0.5134 28 1 -0.3633 -0.8897 -0.5143 29 1 1.8024 2.1232 0.0004 30 1 6.1848 -0.7108 -0.0016 31 1 6.8454 -3.3085 -0.8911 32 1 6.8458 -3.3085 0.8889 33 1 8.4523 -1.4192 0.8879 34 1 8.4515 -1.4197 -0.8920 35 1 9.5332 -2.9750 -2.0327 36 1 10.4933 -5.4211 -1.7585 37 1 11.7469 -4.1676 -1.9310 38 1 13.6831 -6.1157 -2.6973 39 1 9.7670 -5.7986 0.8673 40 1 11.0243 -5.3209 2.0390 41 1 10.4953 -2.9940 1.8164 42 1 8.9283 -3.8208 1.9463 43 1 1.8020 -2.1451 -0.0004 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001160036572.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:16:32 Heat of formation + Delta-G solvation = 4.588557 kcal Electronic energy + Delta-G solvation = -23266.680568 eV Core-core repulsion = 19824.142210 eV Total energy + Delta-G solvation = -3442.538358 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 320.130 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -40.93955 -39.53381 -38.96500 -36.77538 -35.16970 -33.25496 -32.10424 -31.46381 -30.19983 -28.69859 -27.30612 -25.55575 -24.49725 -23.75216 -22.50900 -21.77595 -19.96774 -19.53157 -19.35689 -17.67475 -17.21820 -17.07039 -16.84879 -16.64113 -15.86769 -15.56551 -15.52077 -15.18432 -15.07595 -14.66811 -14.63042 -14.30172 -14.06444 -13.88292 -13.41438 -13.22810 -13.15011 -12.92859 -12.86300 -12.80560 -12.77311 -12.57229 -12.38440 -12.18674 -11.93303 -11.88189 -11.67979 -11.38033 -11.13201 -10.68205 -10.33120 -9.83384 -9.49781 -9.34356 -8.75100 -7.88084 -5.30129 -0.53012 0.47190 0.91000 1.32624 1.39848 1.46579 1.47704 1.57757 2.06451 2.09358 2.51138 3.28703 3.64581 3.71103 3.94944 4.04791 4.08385 4.09369 4.19214 4.27669 4.39047 4.55330 4.56774 4.66699 4.69157 4.84077 4.86179 4.88370 4.91288 4.95848 5.04349 5.05498 5.16832 5.23470 5.27673 5.39291 5.41578 5.46962 5.50317 5.60854 5.87122 6.27292 6.33619 6.35990 7.02607 7.13067 7.83216 8.38269 9.20604 Molecular weight = 320.13amu Principal moments of inertia in cm(-1) A = 0.039985 B = 0.001994 C = 0.001970 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 700.091231 B =14035.725799 C =14210.231534 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.093 4.093 2 C -0.131 4.131 3 C -0.225 4.225 4 S 0.246 5.754 5 C -0.299 4.299 6 C 0.585 3.415 7 O -0.577 6.577 8 N -0.712 5.712 9 C 0.132 3.868 10 C -0.080 4.080 11 C -0.120 4.120 12 C -0.173 4.173 13 C 0.206 3.794 14 N -0.615 5.615 15 C -0.257 4.257 16 H 0.071 0.929 17 C -0.058 4.058 18 N -0.942 5.942 19 Si 0.972 3.028 20 H -0.285 1.285 21 H -0.293 1.293 22 H -0.269 1.269 23 C 0.135 3.865 24 C -0.087 4.087 25 C -0.059 4.059 26 H 0.078 0.922 27 H 0.083 0.917 28 H 0.068 0.932 29 H 0.199 0.801 30 H 0.411 0.589 31 H 0.053 0.947 32 H 0.064 0.936 33 H 0.095 0.905 34 H 0.085 0.915 35 H 0.114 0.886 36 H 0.002 0.998 37 H 0.056 0.944 38 H 0.249 0.751 39 H 0.017 0.983 40 H 0.059 0.941 41 H 0.070 0.930 42 H 0.085 0.915 43 H 0.143 0.857 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.980 19.968 4.969 31.599 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.144 4.144 3 C -0.363 4.363 4 S 0.515 5.485 5 C -0.420 4.420 6 C 0.372 3.628 7 O -0.459 6.459 8 N -0.364 5.364 9 C 0.009 3.991 10 C -0.117 4.117 11 C -0.121 4.121 12 C -0.192 4.192 13 C 0.081 3.919 14 N -0.339 5.339 15 C -0.387 4.387 16 H 0.089 0.911 17 C -0.253 4.253 18 N -0.589 5.589 19 Si 0.800 3.200 20 H -0.212 1.212 21 H -0.219 1.219 22 H -0.194 1.194 23 C 0.009 3.991 24 C -0.126 4.126 25 C -0.094 4.094 26 H 0.096 0.904 27 H 0.102 0.898 28 H 0.087 0.913 29 H 0.216 0.784 30 H 0.248 0.752 31 H 0.072 0.928 32 H 0.082 0.918 33 H 0.113 0.887 34 H 0.103 0.897 35 H 0.131 0.869 36 H 0.020 0.980 37 H 0.074 0.926 38 H 0.058 0.942 39 H 0.035 0.965 40 H 0.078 0.922 41 H 0.088 0.912 42 H 0.104 0.896 43 H 0.160 0.840 Dipole moment (debyes) X Y Z Total from point charges -22.736 20.019 4.858 30.680 hybrid contribution -0.039 -1.176 -0.438 1.255 sum -22.775 18.844 4.420 29.888 Atomic orbital electron populations 1.20572 0.87679 1.03758 1.03214 1.18975 0.99291 0.90917 1.05203 1.25594 0.98288 1.04476 1.07945 1.82756 1.04266 0.94788 1.66657 1.24519 0.97642 0.98885 1.20906 1.17342 0.82450 0.87366 0.75624 1.90820 1.82431 1.20382 1.52255 1.45783 1.04802 1.11056 1.74731 1.21269 0.85997 0.89956 1.01905 1.20820 0.90094 0.96283 1.04508 1.20547 0.97924 0.98809 0.94805 1.22834 0.98908 0.99326 0.98174 1.19359 0.93155 0.92282 0.87110 1.44426 1.02698 1.80839 1.05947 1.19538 0.83884 1.39622 0.95700 0.91081 1.25814 1.02592 0.99597 0.97255 1.70202 1.35187 1.47836 1.05634 0.85207 0.80163 0.78010 0.76659 1.21163 1.21893 1.19405 1.21193 0.91509 0.95124 0.91233 1.20752 0.99992 0.97128 0.94704 1.20844 0.91235 1.00644 0.96691 0.90374 0.89844 0.91312 0.78423 0.75177 0.92807 0.91783 0.88701 0.89658 0.86854 0.98021 0.92605 0.94156 0.96460 0.92221 0.91154 0.89640 0.83975 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -0.78 10.13 71.24 0.72 -0.06 16 2 C -0.13 -1.75 5.78 -21.05 -0.12 -1.88 16 3 C -0.23 -2.29 10.67 66.82 0.71 -1.58 16 4 S 0.25 2.89 22.16 -56.49 -1.25 1.64 16 5 C -0.30 -6.04 6.45 24.08 0.16 -5.88 16 6 C 0.58 15.28 7.78 86.42 0.67 15.96 16 7 O -0.58 -20.26 16.84 -4.35 -0.07 -20.33 16 8 N -0.71 -15.10 5.55 -467.17 -2.59 -17.69 16 9 C 0.13 3.27 5.66 86.38 0.49 3.76 16 10 C -0.08 -1.81 5.32 29.85 0.16 -1.65 16 11 C -0.12 -3.92 5.11 -15.14 -0.08 -3.99 16 12 C -0.17 -6.72 9.47 27.10 0.26 -6.46 16 13 C 0.21 10.46 5.23 85.41 0.45 10.91 16 14 N -0.61 -32.11 3.01 -703.02 -2.11 -34.22 16 15 C -0.26 -14.53 9.71 84.03 0.82 -13.71 16 16 H 0.07 3.86 7.88 -2.91 -0.02 3.84 16 17 C -0.06 -3.32 5.01 84.86 0.43 -2.90 16 18 N -0.94 -57.16 11.08 21.65 0.24 -56.92 16 19 Si 0.97 45.66 29.58 68.60 2.03 47.69 16 20 H -0.28 -13.16 7.11 99.48 0.71 -12.46 16 21 H -0.29 -13.76 7.11 99.48 0.71 -13.05 16 22 H -0.27 -12.04 7.11 99.48 0.71 -11.33 16 23 C 0.13 5.73 6.59 86.31 0.57 6.30 16 24 C -0.09 -2.90 5.95 29.71 0.18 -2.73 16 25 C -0.06 -1.13 9.80 21.72 0.21 -0.92 16 26 H 0.08 0.55 8.14 -2.39 -0.02 0.53 16 27 H 0.08 0.42 8.12 -2.39 -0.02 0.41 16 28 H 0.07 0.59 8.13 -2.39 -0.02 0.57 16 29 H 0.20 0.79 8.06 -2.91 -0.02 0.76 16 30 H 0.41 6.07 7.59 -92.71 -0.70 5.37 16 31 H 0.05 1.56 8.14 -2.38 -0.02 1.54 16 32 H 0.06 1.72 8.11 -2.39 -0.02 1.70 16 33 H 0.09 1.75 8.11 -2.39 -0.02 1.73 16 34 H 0.08 1.72 7.78 -2.39 -0.02 1.71 16 35 H 0.11 3.83 7.73 -2.91 -0.02 3.81 16 36 H 0.00 0.12 8.14 -2.39 -0.02 0.10 16 37 H 0.06 3.16 6.41 -2.38 -0.02 3.15 16 38 H 0.25 14.63 8.31 -92.70 -0.77 13.86 16 39 H 0.02 0.75 8.14 -2.38 -0.02 0.73 16 40 H 0.06 2.44 7.96 -2.39 -0.02 2.42 16 41 H 0.07 2.31 8.14 -2.39 -0.02 2.29 16 42 H 0.09 2.35 8.10 -2.39 -0.02 2.33 16 43 H 0.14 2.88 8.06 -2.91 -0.02 2.86 16 Total: -1.00 -73.98 369.24 2.16 -71.82 By element: Atomic # 1 Polarization: 12.55 SS G_CDS: 0.31 Total: 12.85 kcal Atomic # 6 Polarization: -10.45 SS G_CDS: 5.61 Total: -4.83 kcal Atomic # 7 Polarization: -104.37 SS G_CDS: -4.47 Total: -108.83 kcal Atomic # 8 Polarization: -20.26 SS G_CDS: -0.07 Total: -20.33 kcal Atomic # 14 Polarization: 45.66 SS G_CDS: 2.03 Total: 47.69 kcal Atomic # 16 Polarization: 2.89 SS G_CDS: -1.25 Total: 1.64 kcal Total: -73.98 2.16 -71.82 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001160036572.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 76.405 kcal (2) G-P(sol) polarization free energy of solvation -73.975 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 2.430 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.159 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.816 kcal (6) G-S(sol) free energy of system = (1) + (5) 4.589 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds