Wall clock time and date at job start Tue Mar 31 2020 12:10:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50710 * 1 3 3 C 1.38622 * 120.44486 * 2 1 4 4 C 1.38578 * 118.39884 * 179.97438 * 3 2 1 5 5 N 1.32347 * 119.10233 * 0.02562 * 4 3 2 6 6 C 1.31777 * 120.82495 * 359.97438 * 5 4 3 7 7 C 1.50693 * 119.12899 * 180.02562 * 6 5 4 8 8 N 1.46506 * 109.46974 * 90.00154 * 7 6 5 9 9 C 1.38085 * 119.99905 * 180.02562 * 8 7 6 10 10 N 1.31357 * 119.76750 * 0.02562 * 9 8 7 11 11 C 1.34030 * 121.97065 * 179.97438 * 10 9 8 12 12 C 1.40433 * 120.12444 * 179.97438 * 11 10 9 13 13 C 1.36284 * 119.96650 * 179.72128 * 12 11 10 14 14 C 1.39291 * 121.07165 * 0.25972 * 13 12 11 15 15 C 1.36134 * 120.77146 * 0.02562 * 14 13 12 16 16 C 1.40844 * 119.70535 * 359.97275 * 15 14 13 17 17 C 1.40238 * 120.56925 * 180.02562 * 16 15 14 18 18 C 1.40279 * 118.13339 * 179.21772 * 17 16 15 19 19 C 1.40891 * 120.69535 * 180.26254 * 18 17 16 20 20 H 1.07998 * 120.00044 * 205.20937 * 19 18 17 21 21 C 1.40068 * 120.00174 * 25.21062 * 19 18 17 22 22 N 1.30794 * 119.99938 * 14.42328 * 21 19 18 23 23 Si 1.86799 * 120.00133 * 194.41900 * 21 19 18 24 24 H 1.48502 * 109.46863 * 60.00061 * 23 21 19 25 25 H 1.48506 * 109.47179 * 180.02562 * 23 21 19 26 26 H 1.48502 * 109.47438 * 300.00164 * 23 21 19 27 27 N 1.31822 * 121.75032 * 0.28127 * 6 5 4 28 28 H 1.09002 * 109.46882 * 89.99624 * 1 2 3 29 29 H 1.08992 * 109.47055 * 209.99466 * 1 2 3 30 30 H 1.08999 * 109.47157 * 329.99808 * 1 2 3 31 31 H 1.08006 * 120.80372 * 0.03074 * 3 2 1 32 32 H 1.07993 * 120.44737 * 180.02562 * 4 3 2 33 33 H 1.08996 * 109.46918 * 330.00720 * 7 6 5 34 34 H 1.08994 * 109.47593 * 210.00155 * 7 6 5 35 35 H 0.97004 * 120.00020 * 0.02562 * 8 7 6 36 36 H 1.07997 * 120.01850 * 0.02562 * 12 11 10 37 37 H 1.08003 * 119.46409 * 180.27794 * 13 12 11 38 38 H 1.08001 * 119.61605 * 179.97438 * 14 13 12 39 39 H 1.08006 * 120.14584 * 179.97438 * 15 14 13 40 40 H 1.08003 * 120.93002 * 359.95646 * 17 16 15 41 41 H 0.96994 * 119.99745 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.2095 1.1951 0.0000 4 6 3.5944 1.1456 0.0005 5 7 4.1964 -0.0330 0.0005 6 6 3.4958 -1.1491 0.0005 7 6 4.2207 -2.4702 0.0011 8 7 4.4550 -2.8981 1.3825 9 6 5.1084 -4.0880 1.6354 10 7 5.5183 -4.8325 0.6338 11 6 6.1571 -5.9946 0.8284 12 6 6.5781 -6.7602 -0.2710 13 6 7.2324 -7.9386 -0.0695 14 6 7.4902 -8.4068 1.2168 15 6 7.0935 -7.6974 2.3088 16 6 6.4148 -6.4751 2.1382 17 6 5.9984 -5.7292 3.2504 18 6 5.3415 -4.5110 3.0216 19 6 4.9051 -3.7157 4.0995 20 1 4.0821 -3.0293 3.9656 21 6 5.5385 -3.8151 5.3448 22 7 6.6943 -4.4192 5.4442 23 14 4.7327 -3.0850 6.8636 24 1 3.4118 -3.7280 7.0806 25 1 5.5993 -3.3217 8.0461 26 1 4.5465 -1.6242 6.6715 27 7 2.1776 -1.1406 -0.0050 28 1 -0.3633 0.0001 -1.0277 29 1 -0.3633 -0.8900 0.5137 30 1 -0.3633 0.8900 0.5139 31 1 1.6900 2.1420 0.0005 32 1 4.1746 2.0565 0.0010 33 1 5.1759 -2.3607 -0.5123 34 1 3.6155 -3.2170 -0.5128 35 1 4.1511 -2.3454 2.1196 36 1 6.3878 -6.4129 -1.2758 37 1 7.5565 -8.5187 -0.9209 38 1 8.0101 -9.3441 1.3493 39 1 7.2983 -8.0701 3.3016 40 1 6.1890 -6.0770 4.2550 41 1 7.1328 -4.4884 6.3066 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001162193594.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:10:18 Heat of formation + Delta-G solvation = 93.433182 kcal Electronic energy + Delta-G solvation = -25189.139498 eV Core-core repulsion = 21647.302531 eV Total energy + Delta-G solvation = -3541.836966 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 320.133 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -41.15627 -39.08576 -36.74054 -34.88935 -34.35627 -33.81884 -32.34570 -31.44613 -29.47994 -28.85142 -28.33220 -26.45980 -25.45973 -23.52329 -22.41177 -21.67469 -21.42000 -20.41148 -18.17827 -17.73615 -17.09004 -16.36135 -16.11848 -15.59968 -15.35800 -15.03066 -14.71075 -14.38578 -13.85971 -13.62844 -13.39630 -13.25947 -13.08992 -12.94204 -12.62686 -12.51140 -12.43486 -12.36865 -11.79430 -11.57538 -11.29360 -10.99108 -10.83218 -10.77873 -10.69852 -10.63018 -10.36147 -9.86792 -9.61111 -9.48097 -9.28197 -8.79896 -8.72087 -8.16470 -7.18491 -6.90267 -6.55736 -4.39716 0.73426 1.00204 1.88047 2.28903 2.92600 2.97295 2.99763 3.48923 3.55906 3.78045 3.79084 4.01964 4.07405 4.31682 4.34779 4.78752 4.80497 4.93263 5.15818 5.27732 5.28297 5.54427 5.66750 5.70041 5.70181 5.85366 5.92624 6.00790 6.06840 6.23653 6.32320 6.36733 6.50260 6.58412 6.86115 6.95569 6.96676 7.13423 7.31808 7.49107 7.53031 7.69066 7.84947 7.90767 8.07425 8.13697 8.26681 8.47318 8.60128 8.74120 9.50989 10.02115 Molecular weight = 320.13amu Principal moments of inertia in cm(-1) A = 0.009449 B = 0.004370 C = 0.003190 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2962.707509 B = 6406.050900 C = 8775.527748 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.107 4.107 2 C 0.172 3.828 3 C -0.233 4.233 4 C 0.148 3.852 5 N -0.507 5.507 6 C 0.317 3.683 7 C 0.210 3.790 8 N -0.710 5.710 9 C 0.389 3.611 10 N -0.559 5.559 11 C 0.087 3.913 12 C -0.088 4.088 13 C -0.165 4.165 14 C -0.141 4.141 15 C -0.119 4.119 16 C -0.066 4.066 17 C -0.184 4.184 18 C 0.046 3.954 19 C -0.439 4.439 20 H 0.076 0.924 21 C 0.073 3.927 22 N -0.778 5.778 23 Si 0.911 3.089 24 H -0.262 1.262 25 H -0.276 1.276 26 H -0.266 1.266 27 N -0.504 5.504 28 H 0.084 0.916 29 H 0.084 0.916 30 H 0.079 0.921 31 H 0.146 0.854 32 H 0.168 0.832 33 H 0.084 0.916 34 H 0.083 0.917 35 H 0.407 0.593 36 H 0.108 0.892 37 H 0.102 0.898 38 H 0.101 0.899 39 H 0.107 0.893 40 H 0.134 0.866 41 H 0.285 0.715 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.844 8.832 -5.958 13.230 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C 0.025 3.975 3 C -0.255 4.255 4 C -0.017 4.017 5 N -0.221 5.221 6 C 0.049 3.951 7 C 0.084 3.916 8 N -0.349 5.349 9 C 0.136 3.864 10 N -0.279 5.279 11 C -0.031 4.031 12 C -0.108 4.108 13 C -0.185 4.185 14 C -0.160 4.160 15 C -0.138 4.138 16 C -0.070 4.070 17 C -0.210 4.210 18 C 0.040 3.960 19 C -0.469 4.469 20 H 0.094 0.906 21 C -0.147 4.147 22 N -0.402 5.402 23 Si 0.735 3.265 24 H -0.187 1.187 25 H -0.200 1.200 26 H -0.190 1.190 27 N -0.220 5.220 28 H 0.103 0.897 29 H 0.103 0.897 30 H 0.098 0.902 31 H 0.164 0.836 32 H 0.186 0.814 33 H 0.102 0.898 34 H 0.101 0.899 35 H 0.243 0.757 36 H 0.127 0.873 37 H 0.121 0.879 38 H 0.119 0.881 39 H 0.125 0.875 40 H 0.151 0.849 41 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges -7.258 8.081 -6.853 12.843 hybrid contribution -0.596 1.299 1.855 2.342 sum -7.854 9.380 -4.998 13.215 Atomic orbital electron populations 1.20788 0.87845 1.04156 1.03591 1.21807 0.97707 0.88263 0.89742 1.22763 0.96706 1.00423 1.05599 1.23282 0.92124 0.96311 0.90034 1.68340 1.41762 0.98738 1.13295 1.23448 0.86476 0.94802 0.90368 1.19671 0.98607 0.87004 0.86359 1.43708 1.64060 1.21741 1.05360 1.20019 0.90988 0.85699 0.89706 1.66961 1.19687 1.07838 1.33440 1.18032 1.01030 0.92403 0.91621 1.20411 0.99005 0.94391 0.96980 1.20305 1.04296 0.97654 0.96219 1.20435 1.02862 0.99686 0.92986 1.20837 0.99997 0.95278 0.97679 1.18657 0.98922 0.95416 0.93994 1.21313 1.08504 0.94104 0.97052 1.18909 0.95132 0.93088 0.88901 1.19237 1.14205 1.19536 0.93894 0.90576 1.25880 0.93828 0.94380 1.00593 1.69770 1.11482 1.31936 1.26974 0.86301 0.80221 0.80102 0.79827 1.18669 1.20049 1.19024 1.68198 1.09754 1.30347 1.13681 0.89739 0.89716 0.90197 0.83646 0.81443 0.89790 0.89851 0.75674 0.87347 0.87948 0.88101 0.87495 0.84851 0.90423 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.84 10.22 36.01 0.37 -0.47 16 2 C 0.17 2.00 6.82 -82.24 -0.56 1.44 16 3 C -0.23 -2.26 9.86 -39.31 -0.39 -2.65 16 4 C 0.15 1.67 11.30 -17.20 -0.19 1.48 16 5 N -0.51 -7.73 10.33 -10.73 -0.11 -7.84 16 6 C 0.32 5.14 7.01 -157.19 -1.10 4.04 16 7 C 0.21 3.79 6.10 -5.19 -0.03 3.76 16 8 N -0.71 -14.69 5.62 -59.80 -0.34 -15.03 16 9 C 0.39 9.40 7.67 -153.67 -1.18 8.22 16 10 N -0.56 -13.61 9.45 -8.56 -0.08 -13.69 16 11 C 0.09 2.12 6.60 -84.69 -0.56 1.56 16 12 C -0.09 -1.89 9.94 -39.46 -0.39 -2.28 16 13 C -0.16 -3.19 9.95 -39.89 -0.40 -3.58 16 14 C -0.14 -2.75 9.96 -39.95 -0.40 -3.15 16 15 C -0.12 -2.60 9.75 -39.35 -0.38 -2.99 16 16 C -0.07 -1.65 5.74 -106.77 -0.61 -2.26 16 17 C -0.18 -4.80 8.53 -38.06 -0.32 -5.12 16 18 C 0.05 1.19 5.74 -104.67 -0.60 0.59 16 19 C -0.44 -10.84 8.60 -37.89 -0.33 -11.17 16 20 H 0.08 1.76 6.75 -52.49 -0.35 1.41 16 21 C 0.07 1.73 5.23 -17.31 -0.09 1.64 16 22 N -0.78 -19.26 10.84 55.55 0.60 -18.66 16 23 Si 0.91 17.77 29.58 -169.99 -5.03 12.74 16 24 H -0.26 -5.10 7.11 56.52 0.40 -4.69 16 25 H -0.28 -5.27 7.11 56.52 0.40 -4.86 16 26 H -0.27 -5.11 7.11 56.52 0.40 -4.71 16 27 N -0.50 -7.65 10.27 -6.98 -0.07 -7.72 16 28 H 0.08 0.56 8.14 -51.93 -0.42 0.13 16 29 H 0.08 0.74 8.14 -51.93 -0.42 0.31 16 30 H 0.08 0.44 8.10 -51.93 -0.42 0.02 16 31 H 0.15 0.87 8.06 -52.48 -0.42 0.45 16 32 H 0.17 1.29 8.06 -52.49 -0.42 0.86 16 33 H 0.08 1.56 8.14 -51.93 -0.42 1.13 16 34 H 0.08 1.52 8.14 -51.93 -0.42 1.10 16 35 H 0.41 8.27 6.79 -40.82 -0.28 8.00 16 36 H 0.11 2.12 8.06 -52.49 -0.42 1.70 16 37 H 0.10 1.65 8.06 -52.48 -0.42 1.23 16 38 H 0.10 1.65 8.06 -52.49 -0.42 1.23 16 39 H 0.11 2.17 8.06 -52.48 -0.42 1.75 16 40 H 0.13 3.55 6.16 -52.48 -0.32 3.23 16 41 H 0.28 6.43 8.29 -40.82 -0.34 6.09 16 LS Contribution 353.45 15.07 5.33 5.33 Total: -1.00 -29.84 353.45 -11.61 -41.45 By element: Atomic # 1 Polarization: 19.12 SS G_CDS: -4.74 Total: 14.38 kcal Atomic # 6 Polarization: -3.78 SS G_CDS: -7.17 Total: -10.95 kcal Atomic # 7 Polarization: -62.95 SS G_CDS: 0.00 Total: -62.95 kcal Atomic # 14 Polarization: 17.77 SS G_CDS: -5.03 Total: 12.74 kcal Total LS contribution 5.33 Total: 5.33 kcal Total: -29.84 -11.61 -41.45 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001162193594.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 134.888 kcal (2) G-P(sol) polarization free energy of solvation -29.844 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 105.043 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.610 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.454 kcal (6) G-S(sol) free energy of system = (1) + (5) 93.433 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds