Wall clock time and date at job start Tue Mar 31 2020 12:10:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50710 * 1 3 3 C 1.38622 * 120.44486 * 2 1 4 4 C 1.38578 * 118.39884 * 179.97438 * 3 2 1 5 5 N 1.32347 * 119.10233 * 0.02562 * 4 3 2 6 6 C 1.31777 * 120.82495 * 359.97438 * 5 4 3 7 7 C 1.50693 * 119.12899 * 180.02562 * 6 5 4 8 8 N 1.46506 * 109.46974 * 90.00154 * 7 6 5 9 9 C 1.38085 * 119.99905 * 180.02562 * 8 7 6 10 10 N 1.31357 * 119.76750 * 0.02562 * 9 8 7 11 11 C 1.34030 * 121.97065 * 179.97438 * 10 9 8 12 12 C 1.40433 * 120.12444 * 179.97438 * 11 10 9 13 13 C 1.36284 * 119.96650 * 179.72128 * 12 11 10 14 14 C 1.39291 * 121.07165 * 0.25972 * 13 12 11 15 15 C 1.36134 * 120.77146 * 0.02562 * 14 13 12 16 16 C 1.40844 * 119.70535 * 359.97275 * 15 14 13 17 17 C 1.40238 * 120.56925 * 180.02562 * 16 15 14 18 18 C 1.40279 * 118.13339 * 179.21772 * 17 16 15 19 19 C 1.40891 * 120.69535 * 180.26254 * 18 17 16 20 20 H 1.07998 * 120.00044 * 205.20937 * 19 18 17 21 21 C 1.40068 * 120.00174 * 25.21062 * 19 18 17 22 22 N 1.30794 * 119.99938 * 14.42328 * 21 19 18 23 23 Si 1.86799 * 120.00133 * 194.41900 * 21 19 18 24 24 H 1.48502 * 109.46863 * 60.00061 * 23 21 19 25 25 H 1.48506 * 109.47179 * 180.02562 * 23 21 19 26 26 H 1.48502 * 109.47438 * 300.00164 * 23 21 19 27 27 N 1.31822 * 121.75032 * 0.28127 * 6 5 4 28 28 H 1.09002 * 109.46882 * 89.99624 * 1 2 3 29 29 H 1.08992 * 109.47055 * 209.99466 * 1 2 3 30 30 H 1.08999 * 109.47157 * 329.99808 * 1 2 3 31 31 H 1.08006 * 120.80372 * 0.03074 * 3 2 1 32 32 H 1.07993 * 120.44737 * 180.02562 * 4 3 2 33 33 H 1.08996 * 109.46918 * 330.00720 * 7 6 5 34 34 H 1.08994 * 109.47593 * 210.00155 * 7 6 5 35 35 H 0.97004 * 120.00020 * 0.02562 * 8 7 6 36 36 H 1.07997 * 120.01850 * 0.02562 * 12 11 10 37 37 H 1.08003 * 119.46409 * 180.27794 * 13 12 11 38 38 H 1.08001 * 119.61605 * 179.97438 * 14 13 12 39 39 H 1.08006 * 120.14584 * 179.97438 * 15 14 13 40 40 H 1.08003 * 120.93002 * 359.95646 * 17 16 15 41 41 H 0.96994 * 119.99745 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.2095 1.1951 0.0000 4 6 3.5944 1.1456 0.0005 5 7 4.1964 -0.0330 0.0005 6 6 3.4958 -1.1491 0.0005 7 6 4.2207 -2.4702 0.0011 8 7 4.4550 -2.8981 1.3825 9 6 5.1084 -4.0880 1.6354 10 7 5.5183 -4.8325 0.6338 11 6 6.1571 -5.9946 0.8284 12 6 6.5781 -6.7602 -0.2710 13 6 7.2324 -7.9386 -0.0695 14 6 7.4902 -8.4068 1.2168 15 6 7.0935 -7.6974 2.3088 16 6 6.4148 -6.4751 2.1382 17 6 5.9984 -5.7292 3.2504 18 6 5.3415 -4.5110 3.0216 19 6 4.9051 -3.7157 4.0995 20 1 4.0821 -3.0293 3.9656 21 6 5.5385 -3.8151 5.3448 22 7 6.6943 -4.4192 5.4442 23 14 4.7327 -3.0850 6.8636 24 1 3.4118 -3.7280 7.0806 25 1 5.5993 -3.3217 8.0461 26 1 4.5465 -1.6242 6.6715 27 7 2.1776 -1.1406 -0.0050 28 1 -0.3633 0.0001 -1.0277 29 1 -0.3633 -0.8900 0.5137 30 1 -0.3633 0.8900 0.5139 31 1 1.6900 2.1420 0.0005 32 1 4.1746 2.0565 0.0010 33 1 5.1759 -2.3607 -0.5123 34 1 3.6155 -3.2170 -0.5128 35 1 4.1511 -2.3454 2.1196 36 1 6.3878 -6.4129 -1.2758 37 1 7.5565 -8.5187 -0.9209 38 1 8.0101 -9.3441 1.3493 39 1 7.2983 -8.0701 3.3016 40 1 6.1890 -6.0770 4.2550 41 1 7.1328 -4.4884 6.3066 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001162193594.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:10:17 Heat of formation + Delta-G solvation = 76.757812 kcal Electronic energy + Delta-G solvation = -25189.862596 eV Core-core repulsion = 21647.302531 eV Total energy + Delta-G solvation = -3542.560065 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 320.133 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -42.15043 -40.84690 -38.39528 -36.40952 -35.64838 -35.24561 -33.53804 -33.24054 -31.16787 -30.20925 -29.44110 -27.90204 -27.25743 -24.52080 -23.77552 -23.38618 -22.88669 -22.16282 -19.91059 -18.85088 -18.65113 -17.98007 -17.31830 -17.19762 -16.48145 -16.38003 -16.06625 -15.65367 -15.41926 -15.21075 -14.81689 -14.68193 -14.41774 -14.15003 -14.04459 -13.88879 -13.72957 -13.51077 -13.34897 -13.15522 -12.94372 -12.69672 -12.40741 -12.27597 -12.00516 -11.82759 -11.63294 -11.61274 -11.26334 -10.61353 -10.51163 -10.39248 -10.28325 -10.00022 -8.99709 -8.69318 -8.30122 -6.28811 -0.24535 0.10190 0.13319 0.53021 1.33839 1.38369 1.47640 1.72683 2.14223 2.24670 2.34587 2.72368 2.91153 2.99633 3.11280 3.57981 3.81686 3.94259 4.02798 4.12753 4.22548 4.30592 4.36149 4.44081 4.47114 4.62017 4.65904 4.70485 4.73390 4.77845 4.87673 4.90220 5.06318 5.08598 5.24714 5.43470 5.45091 5.58002 5.68209 5.84926 5.94867 6.01561 6.03954 6.24750 6.26946 6.56426 6.62228 6.74337 6.89982 7.06254 7.67693 8.25465 Molecular weight = 320.13amu Principal moments of inertia in cm(-1) A = 0.009449 B = 0.004370 C = 0.003190 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2962.707509 B = 6406.050900 C = 8775.527748 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.103 4.103 2 C 0.153 3.847 3 C -0.208 4.208 4 C 0.136 3.864 5 N -0.537 5.537 6 C 0.297 3.703 7 C 0.219 3.781 8 N -0.702 5.702 9 C 0.376 3.624 10 N -0.567 5.567 11 C 0.058 3.942 12 C -0.103 4.103 13 C -0.148 4.148 14 C -0.129 4.129 15 C -0.137 4.137 16 C -0.094 4.094 17 C -0.209 4.209 18 C 0.019 3.981 19 C -0.463 4.463 20 H 0.082 0.918 21 C 0.033 3.967 22 N -0.811 5.811 23 Si 0.985 3.015 24 H -0.260 1.260 25 H -0.267 1.267 26 H -0.258 1.258 27 N -0.532 5.532 28 H 0.100 0.900 29 H 0.071 0.929 30 H 0.111 0.889 31 H 0.194 0.806 32 H 0.204 0.796 33 H 0.072 0.928 34 H 0.074 0.926 35 H 0.406 0.594 36 H 0.124 0.876 37 H 0.147 0.853 38 H 0.143 0.857 39 H 0.114 0.886 40 H 0.118 0.882 41 H 0.291 0.709 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.731 10.059 -6.532 14.835 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C 0.008 3.992 3 C -0.229 4.229 4 C -0.028 4.028 5 N -0.252 5.252 6 C 0.028 3.972 7 C 0.094 3.906 8 N -0.340 5.340 9 C 0.122 3.878 10 N -0.288 5.288 11 C -0.059 4.059 12 C -0.122 4.122 13 C -0.167 4.167 14 C -0.147 4.147 15 C -0.156 4.156 16 C -0.098 4.098 17 C -0.235 4.235 18 C 0.013 3.987 19 C -0.492 4.492 20 H 0.100 0.900 21 C -0.184 4.184 22 N -0.436 5.436 23 Si 0.805 3.195 24 H -0.184 1.184 25 H -0.191 1.191 26 H -0.182 1.182 27 N -0.248 5.248 28 H 0.118 0.882 29 H 0.090 0.910 30 H 0.130 0.870 31 H 0.211 0.789 32 H 0.221 0.779 33 H 0.090 0.910 34 H 0.092 0.908 35 H 0.242 0.758 36 H 0.142 0.858 37 H 0.165 0.835 38 H 0.161 0.839 39 H 0.132 0.868 40 H 0.136 0.864 41 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges -8.155 9.324 -7.453 14.457 hybrid contribution -0.303 0.900 1.893 2.118 sum -8.458 10.224 -5.561 14.387 Atomic orbital electron populations 1.20910 0.85173 1.05057 1.04824 1.22555 0.99477 0.88038 0.89174 1.23250 0.96049 1.01591 1.02040 1.23982 0.93552 0.96001 0.89237 1.68253 1.42813 0.99768 1.14368 1.22824 0.87026 0.94154 0.93183 1.19492 0.98157 0.88524 0.84470 1.43722 1.63067 1.20586 1.06589 1.20181 0.91471 0.86751 0.89417 1.67031 1.20197 1.08229 1.33380 1.18561 1.01753 0.92992 0.92592 1.20696 0.99601 0.95133 0.96814 1.20826 1.01659 0.96577 0.97660 1.20909 1.01162 1.00461 0.92173 1.21039 1.00524 0.94842 0.99242 1.18925 1.00105 0.96791 0.93934 1.21279 1.10273 0.95058 0.96887 1.19253 0.95804 0.93540 0.90147 1.19491 1.14863 1.20149 0.94698 0.89974 1.26776 0.93959 0.94439 1.03200 1.69848 1.12737 1.32942 1.28024 0.85206 0.79071 0.79438 0.75809 1.18416 1.19123 1.18165 1.68125 1.09337 1.32671 1.14665 0.88186 0.91039 0.87040 0.78891 0.77903 0.91039 0.90827 0.75797 0.85833 0.83519 0.83935 0.86818 0.86449 0.89824 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.37 10.22 71.24 0.73 -0.64 16 2 C 0.15 3.31 6.82 42.58 0.29 3.60 16 3 C -0.21 -3.37 9.86 22.44 0.22 -3.15 16 4 C 0.14 2.80 11.30 84.70 0.96 3.76 16 5 N -0.54 -16.47 10.33 -187.86 -1.94 -18.41 16 6 C 0.30 9.96 7.01 138.74 0.97 10.94 16 7 C 0.22 8.48 6.10 85.63 0.52 9.00 16 8 N -0.70 -31.02 5.62 -343.12 -1.93 -32.94 16 9 C 0.38 19.35 7.67 135.71 1.04 20.39 16 10 N -0.57 -29.09 9.45 -180.99 -1.71 -30.80 16 11 C 0.06 2.95 6.60 40.24 0.27 3.21 16 12 C -0.10 -4.34 9.94 22.35 0.22 -4.11 16 13 C -0.15 -5.29 9.95 22.07 0.22 -5.07 16 14 C -0.13 -4.71 9.96 22.03 0.22 -4.49 16 15 C -0.14 -6.06 9.75 22.42 0.22 -5.84 16 16 C -0.09 -4.88 5.74 -21.26 -0.12 -5.00 16 17 C -0.21 -11.62 8.53 23.25 0.20 -11.42 16 18 C 0.02 1.05 5.74 -19.89 -0.11 0.94 16 19 C -0.46 -24.04 8.60 23.36 0.20 -23.84 16 20 H 0.08 4.00 6.75 -2.91 -0.02 3.98 16 21 C 0.03 1.60 5.23 85.29 0.45 2.05 16 22 N -0.81 -41.92 10.84 21.85 0.24 -41.69 16 23 Si 0.98 36.97 29.58 68.60 2.03 39.00 16 24 H -0.26 -9.59 7.11 99.48 0.71 -8.88 16 25 H -0.27 -9.55 7.11 99.48 0.71 -8.84 16 26 H -0.26 -9.27 7.11 99.48 0.71 -8.56 16 27 N -0.53 -16.34 10.27 -176.01 -1.81 -18.14 16 28 H 0.10 1.04 8.14 -2.39 -0.02 1.02 16 29 H 0.07 1.16 8.14 -2.39 -0.02 1.14 16 30 H 0.11 0.78 8.10 -2.39 -0.02 0.76 16 31 H 0.19 1.22 8.06 -2.91 -0.02 1.20 16 32 H 0.20 2.48 8.06 -2.91 -0.02 2.45 16 33 H 0.07 2.87 8.14 -2.39 -0.02 2.85 16 34 H 0.07 2.91 8.14 -2.39 -0.02 2.89 16 35 H 0.41 17.61 6.79 -92.71 -0.63 16.98 16 36 H 0.12 4.73 8.06 -2.91 -0.02 4.71 16 37 H 0.15 3.98 8.06 -2.91 -0.02 3.96 16 38 H 0.14 4.04 8.06 -2.91 -0.02 4.01 16 39 H 0.11 4.71 8.06 -2.91 -0.02 4.69 16 40 H 0.12 6.72 6.16 -2.91 -0.02 6.70 16 41 H 0.29 13.61 8.29 -92.71 -0.77 12.84 16 Total: -1.00 -70.57 353.45 1.81 -68.75 By element: Atomic # 1 Polarization: 43.46 SS G_CDS: 0.45 Total: 43.91 kcal Atomic # 6 Polarization: -16.17 SS G_CDS: 6.49 Total: -9.68 kcal Atomic # 7 Polarization: -134.83 SS G_CDS: -7.15 Total: -141.98 kcal Atomic # 14 Polarization: 36.97 SS G_CDS: 2.03 Total: 39.00 kcal Total: -70.57 1.81 -68.75 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001162193594.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 145.509 kcal (2) G-P(sol) polarization free energy of solvation -70.565 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 74.944 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.814 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.752 kcal (6) G-S(sol) free energy of system = (1) + (5) 76.758 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds