Wall clock time and date at job start Tue Mar 31 2020 12:45:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.52999 * 109.46830 * 2 1 4 4 C 1.52998 * 109.46863 * 119.99926 * 2 1 3 5 5 H 1.09006 * 109.46911 * 299.99904 * 4 2 1 6 6 C 1.47204 * 109.46849 * 180.02562 * 4 2 1 7 7 N 3.43547 * 155.17155 * 119.99757 * 2 1 3 8 8 C 1.50699 * 109.47120 * 60.00091 * 4 2 1 9 9 C 1.38290 * 119.92592 * 59.73054 * 8 4 2 10 10 C 1.38095 * 120.07462 * 179.72885 * 9 8 4 11 11 C 1.38921 * 119.92719 * 0.51530 * 10 9 8 12 12 N 1.39733 * 120.08024 * 179.77630 * 11 10 9 13 13 C 1.38293 * 119.99798 * 350.96457 * 12 11 10 14 14 C 1.38998 * 120.00574 * 300.30482 * 13 12 11 15 15 H 1.07993 * 120.00680 * 158.32372 * 14 13 12 16 16 C 1.40837 * 119.99465 * 338.32041 * 14 13 12 17 17 N 1.30336 * 120.00087 * 357.30370 * 16 14 13 18 18 Si 1.86802 * 119.99852 * 177.29472 * 16 14 13 19 19 H 1.48498 * 109.46903 * 60.00352 * 18 16 14 20 20 H 1.48498 * 109.47153 * 180.02562 * 18 16 14 21 21 H 1.48498 * 109.47348 * 300.00444 * 18 16 14 22 22 C 1.41171 * 120.00024 * 120.29887 * 13 12 11 23 23 C 1.43199 * 120.00115 * 185.17523 * 22 13 12 24 24 N 9.62575 * 90.14006 * 191.29325 * 2 1 3 25 25 C 1.43205 * 119.99483 * 5.17756 * 22 13 12 26 26 N 9.22967 * 92.34738 * 164.19062 * 2 1 3 27 27 C 1.38929 * 119.84646 * 359.75088 * 11 10 9 28 28 C 1.38099 * 119.92111 * 0.02562 * 27 11 10 29 29 H 1.09002 * 109.46728 * 60.00443 * 1 2 3 30 30 H 1.08997 * 109.47161 * 179.97438 * 1 2 3 31 31 H 1.08996 * 109.47356 * 300.00412 * 1 2 3 32 32 H 1.08994 * 109.46828 * 240.00134 * 2 1 3 33 33 H 1.09010 * 109.46714 * 179.97438 * 3 2 1 34 34 H 1.09002 * 109.47103 * 299.99327 * 3 2 1 35 35 H 1.08995 * 109.47757 * 60.00141 * 3 2 1 36 36 H 1.08000 * 119.96221 * 359.97438 * 9 8 4 37 37 H 1.08008 * 120.03831 * 180.27394 * 10 9 8 38 38 H 0.96995 * 119.99986 * 170.96888 * 12 11 10 39 39 H 0.97006 * 119.99494 * 185.02807 * 17 16 14 40 40 H 1.08001 * 120.03797 * 179.97438 * 27 11 10 41 41 H 1.08004 * 119.95792 * 179.97438 * 28 27 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7212 1.2492 5 1 1.6766 -0.2073 2.1392 6 6 3.5120 -0.7207 1.2496 7 7 4.6480 -0.7212 1.2493 8 6 1.5376 -2.1420 1.2492 9 6 1.8681 -2.9906 0.2085 10 6 1.4141 -4.2948 0.2082 11 6 0.6157 -4.7510 1.2495 12 7 0.1506 -6.0687 1.2500 13 6 0.3245 -6.8637 0.1319 14 6 -0.2258 -6.4807 -1.0857 15 1 0.1750 -6.8755 -2.0075 16 6 -1.3061 -5.5778 -1.1172 17 7 -1.8240 -5.1420 -0.0033 18 14 -1.9967 -5.0045 -2.7555 19 1 -2.4867 -6.1771 -3.5236 20 1 -3.1206 -4.0637 -2.5169 21 1 -0.9315 -4.3165 -3.5282 22 6 1.0610 -8.0643 0.2271 23 6 1.3357 -8.8311 -0.9507 24 7 1.5536 -9.4393 -1.8850 25 6 1.5334 -8.5153 1.5015 26 7 1.9081 -8.8731 2.5124 27 6 0.2810 -3.8942 2.2907 28 6 0.7423 -2.5925 2.2870 29 1 -0.3633 0.5138 -0.8901 30 1 -0.3633 -1.0276 -0.0005 31 1 -0.3634 0.5139 0.8899 32 1 1.8933 -0.5138 -0.8900 33 1 3.1301 1.4425 0.0005 34 1 1.6767 1.9563 -0.8901 35 1 1.6767 1.9564 0.8899 36 1 2.4852 -2.6341 -0.6029 37 1 1.6762 -4.9583 -0.6027 38 1 -0.2941 -6.4257 2.0346 39 1 -2.6132 -4.5784 -0.0233 40 1 -0.3398 -4.2455 3.1016 41 1 0.4822 -1.9258 3.0959 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001169083032.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:45:18 Heat of formation + Delta-G solvation = 93.791141 kcal Electronic energy + Delta-G solvation = -25643.025027 eV Core-core repulsion = 22101.203583 eV Total energy + Delta-G solvation = -3541.821444 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 320.133 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -39.72666 -38.14132 -36.51211 -35.40625 -35.03876 -34.74118 -33.50586 -31.38523 -30.42269 -29.43912 -27.36434 -27.16862 -26.07143 -22.65767 -21.97557 -20.79376 -20.57708 -18.91626 -17.63613 -17.29342 -16.99341 -16.28481 -15.68238 -15.44554 -14.79244 -14.22145 -13.97883 -13.75960 -13.51394 -13.30428 -13.03200 -12.77032 -12.68253 -12.61465 -12.59121 -12.39014 -12.31102 -12.29320 -12.03373 -11.79756 -11.72180 -11.58024 -11.53614 -11.38993 -11.20677 -11.08171 -10.96098 -10.83929 -10.71388 -10.60717 -10.42256 -10.07497 -9.78291 -8.43420 -8.17081 -7.70370 -6.66320 -5.48412 1.78251 1.95171 2.30785 2.68149 2.70879 2.84930 2.86243 2.92436 3.37172 3.82167 3.94816 4.00978 4.03574 4.22124 4.37713 4.45645 4.70319 4.79658 4.93562 5.14442 5.22531 5.28210 5.43124 5.47672 5.52697 5.56399 5.58073 5.71433 5.81757 5.91176 5.97675 6.08742 6.16584 6.20262 6.23744 6.29657 6.33789 6.50108 6.80396 6.94248 7.00412 7.04939 7.20388 7.43494 7.64860 7.67146 7.78393 8.32763 8.50456 8.94193 9.10364 9.19314 Molecular weight = 320.13amu Principal moments of inertia in cm(-1) A = 0.011756 B = 0.004567 C = 0.003833 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2381.201874 B = 6128.980160 C = 7303.073038 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.083 4.083 3 C -0.153 4.153 4 C 0.065 3.935 5 H 0.112 0.888 6 C 0.220 3.780 7 N -0.446 5.446 8 C -0.163 4.163 9 C -0.066 4.066 10 C -0.177 4.177 11 C 0.273 3.727 12 N -0.658 5.658 13 C 0.383 3.617 14 C -0.378 4.378 15 H 0.108 0.892 16 C 0.073 3.927 17 N -0.717 5.717 18 Si 0.923 3.077 19 H -0.255 1.255 20 H -0.268 1.268 21 H -0.251 1.251 22 C -0.314 4.314 23 C 0.324 3.676 24 N -0.534 5.534 25 C 0.310 3.690 26 N -0.535 5.535 27 C -0.188 4.188 28 C -0.064 4.064 29 H 0.055 0.945 30 H 0.069 0.931 31 H 0.056 0.944 32 H 0.079 0.921 33 H 0.051 0.949 34 H 0.060 0.940 35 H 0.058 0.942 36 H 0.110 0.890 37 H 0.131 0.869 38 H 0.400 0.600 39 H 0.301 0.699 40 H 0.116 0.884 41 H 0.115 0.885 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.710 16.312 0.362 17.286 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.103 4.103 3 C -0.210 4.210 4 C 0.044 3.956 5 H 0.130 0.870 6 C -0.097 4.097 7 N -0.121 5.121 8 C -0.166 4.166 9 C -0.085 4.085 10 C -0.199 4.199 11 C 0.169 3.831 12 N -0.277 5.277 13 C 0.278 3.722 14 C -0.406 4.406 15 H 0.126 0.874 16 C -0.158 4.158 17 N -0.335 5.335 18 Si 0.745 3.255 19 H -0.179 1.179 20 H -0.193 1.193 21 H -0.175 1.175 22 C -0.333 4.333 23 C 0.016 3.984 24 N -0.216 5.216 25 C 0.003 3.997 26 N -0.217 5.217 27 C -0.210 4.210 28 C -0.083 4.083 29 H 0.074 0.926 30 H 0.088 0.912 31 H 0.075 0.925 32 H 0.098 0.902 33 H 0.070 0.930 34 H 0.079 0.921 35 H 0.077 0.923 36 H 0.128 0.872 37 H 0.149 0.851 38 H 0.236 0.764 39 H 0.113 0.887 40 H 0.134 0.866 41 H 0.133 0.867 Dipole moment (debyes) X Y Z Total from point charges -3.188 14.950 0.508 15.295 hybrid contribution -1.361 0.442 -0.323 1.467 sum -4.550 15.393 0.185 16.052 Atomic orbital electron populations 1.21795 0.93510 1.03174 1.01612 1.21153 0.97081 0.95424 0.96609 1.21940 1.00890 0.95930 1.02282 1.17763 0.81054 0.95717 1.01062 0.86993 1.29222 0.95085 0.92454 0.92967 1.81179 1.12985 1.09192 1.08789 1.18837 1.05938 0.93440 0.98406 1.20585 0.97989 0.93069 0.96846 1.20847 1.02171 0.96520 1.00324 1.17512 0.89206 0.83523 0.92878 1.41499 1.61189 1.09360 1.15617 1.16744 0.84759 0.85338 0.85392 1.20273 1.08172 1.16831 0.95341 0.87427 1.26420 0.96553 0.92934 0.99929 1.69517 1.15339 1.19285 1.29368 0.86008 0.79544 0.79991 0.80006 1.17864 1.19270 1.17455 1.13000 1.33579 1.04565 0.82134 1.24718 0.90698 0.91192 0.91744 1.81063 1.16575 1.12501 1.11472 1.25186 0.90714 0.91728 0.92089 1.81069 1.16809 1.11524 1.12315 1.20424 1.06203 0.93707 1.00680 1.20506 0.96270 0.94923 0.96564 0.92621 0.91176 0.92526 0.90228 0.93000 0.92114 0.92255 0.87186 0.85131 0.76392 0.88699 0.86608 0.86733 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.20 8.95 37.16 0.33 -0.86 16 2 C -0.08 -0.73 2.30 -90.62 -0.21 -0.94 16 3 C -0.15 -1.19 8.94 37.16 0.33 -0.85 16 4 C 0.07 0.66 2.02 -94.56 -0.19 0.46 16 5 H 0.11 0.87 7.87 -51.93 -0.41 0.46 16 6 C 0.22 2.83 12.98 -20.76 -0.27 2.56 16 7 N -0.45 -6.92 18.54 42.15 0.78 -6.14 16 8 C -0.16 -2.02 3.50 -104.59 -0.37 -2.38 16 9 C -0.07 -0.95 8.80 -39.61 -0.35 -1.29 16 10 C -0.18 -2.94 8.66 -39.38 -0.34 -3.28 16 11 C 0.27 4.53 4.86 -83.75 -0.41 4.12 16 12 N -0.66 -11.67 3.34 -8.18 -0.03 -11.69 16 13 C 0.38 7.45 4.96 -83.55 -0.41 7.04 16 14 C -0.38 -7.22 7.00 -38.32 -0.27 -7.49 16 15 H 0.11 2.12 7.01 -52.49 -0.37 1.75 16 16 C 0.07 1.27 4.99 -17.20 -0.09 1.18 16 17 N -0.72 -12.20 10.63 55.60 0.59 -11.61 16 18 Si 0.92 13.90 29.57 -169.99 -5.03 8.87 16 19 H -0.25 -4.03 7.11 56.52 0.40 -3.63 16 20 H -0.27 -3.90 7.11 56.52 0.40 -3.50 16 21 H -0.25 -3.83 7.11 56.52 0.40 -3.42 16 22 C -0.31 -6.65 5.88 -104.93 -0.62 -7.27 16 23 C 0.32 7.27 13.91 -22.48 -0.31 6.95 16 24 N -0.53 -12.49 18.54 41.84 0.78 -11.72 16 25 C 0.31 6.86 14.80 -22.47 -0.33 6.53 16 26 N -0.53 -12.39 18.54 41.83 0.78 -11.61 16 27 C -0.19 -2.71 9.90 -39.38 -0.39 -3.10 16 28 C -0.06 -0.79 9.66 -39.61 -0.38 -1.17 16 29 H 0.05 0.43 8.14 -51.93 -0.42 0.00 16 30 H 0.07 0.71 7.22 -51.93 -0.37 0.34 16 31 H 0.06 0.40 8.14 -51.93 -0.42 -0.02 16 32 H 0.08 0.77 7.37 -51.93 -0.38 0.39 16 33 H 0.05 0.46 7.23 -51.92 -0.38 0.09 16 34 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 35 H 0.06 0.39 8.14 -51.93 -0.42 -0.03 16 36 H 0.11 1.47 7.55 -52.49 -0.40 1.07 16 37 H 0.13 2.34 6.33 -52.48 -0.33 2.01 16 38 H 0.40 6.88 8.81 -40.82 -0.36 6.52 16 39 H 0.30 4.70 8.29 -40.82 -0.34 4.36 16 40 H 0.12 1.55 8.06 -52.49 -0.42 1.12 16 41 H 0.11 1.10 7.94 -52.48 -0.42 0.68 16 LS Contribution 368.82 15.07 5.56 5.56 Total: -1.00 -24.44 368.82 -5.51 -29.94 By element: Atomic # 1 Polarization: 12.85 SS G_CDS: -4.66 Total: 8.19 kcal Atomic # 6 Polarization: 4.48 SS G_CDS: -4.27 Total: 0.21 kcal Atomic # 7 Polarization: -55.67 SS G_CDS: 2.90 Total: -52.77 kcal Atomic # 14 Polarization: 13.90 SS G_CDS: -5.03 Total: 8.87 kcal Total LS contribution 5.56 Total: 5.56 kcal Total: -24.44 -5.51 -29.94 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001169083032.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 123.735 kcal (2) G-P(sol) polarization free energy of solvation -24.439 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 99.296 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.505 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -29.944 kcal (6) G-S(sol) free energy of system = (1) + (5) 93.791 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds