Wall clock time and date at job start Tue Mar 31 2020 12:45:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.52999 * 109.46830 * 2 1 4 4 C 1.52998 * 109.46863 * 119.99926 * 2 1 3 5 5 H 1.09006 * 109.46911 * 299.99904 * 4 2 1 6 6 C 1.47204 * 109.46849 * 180.02562 * 4 2 1 7 7 N 3.43547 * 155.17155 * 119.99757 * 2 1 3 8 8 C 1.50699 * 109.47120 * 60.00091 * 4 2 1 9 9 C 1.38290 * 119.92592 * 59.73054 * 8 4 2 10 10 C 1.38095 * 120.07462 * 179.72885 * 9 8 4 11 11 C 1.38921 * 119.92719 * 0.51530 * 10 9 8 12 12 N 1.39733 * 120.08024 * 179.77630 * 11 10 9 13 13 C 1.38293 * 119.99798 * 350.96457 * 12 11 10 14 14 C 1.38998 * 120.00574 * 300.30482 * 13 12 11 15 15 H 1.07993 * 120.00680 * 158.32372 * 14 13 12 16 16 C 1.40837 * 119.99465 * 338.32041 * 14 13 12 17 17 N 1.30336 * 120.00087 * 357.30370 * 16 14 13 18 18 Si 1.86802 * 119.99852 * 177.29472 * 16 14 13 19 19 H 1.48498 * 109.46903 * 60.00352 * 18 16 14 20 20 H 1.48498 * 109.47153 * 180.02562 * 18 16 14 21 21 H 1.48498 * 109.47348 * 300.00444 * 18 16 14 22 22 C 1.41171 * 120.00024 * 120.29887 * 13 12 11 23 23 C 1.43199 * 120.00115 * 185.17523 * 22 13 12 24 24 N 9.62575 * 90.14006 * 191.29325 * 2 1 3 25 25 C 1.43205 * 119.99483 * 5.17756 * 22 13 12 26 26 N 9.22967 * 92.34738 * 164.19062 * 2 1 3 27 27 C 1.38929 * 119.84646 * 359.75088 * 11 10 9 28 28 C 1.38099 * 119.92111 * 0.02562 * 27 11 10 29 29 H 1.09002 * 109.46728 * 60.00443 * 1 2 3 30 30 H 1.08997 * 109.47161 * 179.97438 * 1 2 3 31 31 H 1.08996 * 109.47356 * 300.00412 * 1 2 3 32 32 H 1.08994 * 109.46828 * 240.00134 * 2 1 3 33 33 H 1.09010 * 109.46714 * 179.97438 * 3 2 1 34 34 H 1.09002 * 109.47103 * 299.99327 * 3 2 1 35 35 H 1.08995 * 109.47757 * 60.00141 * 3 2 1 36 36 H 1.08000 * 119.96221 * 359.97438 * 9 8 4 37 37 H 1.08008 * 120.03831 * 180.27394 * 10 9 8 38 38 H 0.96995 * 119.99986 * 170.96888 * 12 11 10 39 39 H 0.97006 * 119.99494 * 185.02807 * 17 16 14 40 40 H 1.08001 * 120.03797 * 179.97438 * 27 11 10 41 41 H 1.08004 * 119.95792 * 179.97438 * 28 27 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7212 1.2492 5 1 1.6766 -0.2073 2.1392 6 6 3.5120 -0.7207 1.2496 7 7 4.6480 -0.7212 1.2493 8 6 1.5376 -2.1420 1.2492 9 6 1.8681 -2.9906 0.2085 10 6 1.4141 -4.2948 0.2082 11 6 0.6157 -4.7510 1.2495 12 7 0.1506 -6.0687 1.2500 13 6 0.3245 -6.8637 0.1319 14 6 -0.2258 -6.4807 -1.0857 15 1 0.1750 -6.8755 -2.0075 16 6 -1.3061 -5.5778 -1.1172 17 7 -1.8240 -5.1420 -0.0033 18 14 -1.9967 -5.0045 -2.7555 19 1 -2.4867 -6.1771 -3.5236 20 1 -3.1206 -4.0637 -2.5169 21 1 -0.9315 -4.3165 -3.5282 22 6 1.0610 -8.0643 0.2271 23 6 1.3357 -8.8311 -0.9507 24 7 1.5536 -9.4393 -1.8850 25 6 1.5334 -8.5153 1.5015 26 7 1.9081 -8.8731 2.5124 27 6 0.2810 -3.8942 2.2907 28 6 0.7423 -2.5925 2.2870 29 1 -0.3633 0.5138 -0.8901 30 1 -0.3633 -1.0276 -0.0005 31 1 -0.3634 0.5139 0.8899 32 1 1.8933 -0.5138 -0.8900 33 1 3.1301 1.4425 0.0005 34 1 1.6767 1.9563 -0.8901 35 1 1.6767 1.9564 0.8899 36 1 2.4852 -2.6341 -0.6029 37 1 1.6762 -4.9583 -0.6027 38 1 -0.2941 -6.4257 2.0346 39 1 -2.6132 -4.5784 -0.0233 40 1 -0.3398 -4.2455 3.1016 41 1 0.4822 -1.9258 3.0959 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001169083032.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:45:17 Heat of formation + Delta-G solvation = 84.897602 kcal Electronic energy + Delta-G solvation = -25643.410680 eV Core-core repulsion = 22101.203583 eV Total energy + Delta-G solvation = -3542.207097 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 320.133 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -40.84634 -39.32641 -37.82329 -36.86048 -36.52637 -36.13319 -34.84713 -32.68816 -31.55550 -30.60066 -28.72818 -28.04645 -27.09163 -23.87923 -23.20911 -22.06626 -21.37238 -20.46513 -18.88576 -18.55719 -18.25049 -17.64750 -16.85876 -16.63157 -15.68512 -15.34349 -15.08773 -14.85911 -14.62464 -14.52565 -14.37698 -14.27687 -14.00863 -13.86709 -13.71939 -13.60887 -13.43778 -13.39157 -13.38289 -13.18835 -13.03289 -12.94784 -12.76809 -12.64079 -12.61251 -12.26596 -12.03664 -11.88654 -11.74613 -11.52022 -11.44522 -11.33764 -11.02495 -9.64972 -9.56424 -9.06176 -7.96794 -7.08886 0.48458 0.80838 1.05314 1.42235 1.51689 1.59947 1.85542 1.88680 2.06481 2.12741 2.23732 2.39007 2.67186 2.92506 3.01707 3.34603 3.46267 3.87622 3.90462 4.02904 4.14459 4.30123 4.36668 4.52415 4.60446 4.65692 4.77499 4.78517 4.83578 4.98222 4.99700 5.07687 5.13298 5.21036 5.36109 5.36673 5.45306 5.53453 5.63661 5.65098 5.73531 5.84900 5.92371 6.11368 6.22675 6.36237 6.66944 6.94462 7.10851 7.24082 7.36686 7.82377 Molecular weight = 320.13amu Principal moments of inertia in cm(-1) A = 0.011756 B = 0.004567 C = 0.003833 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2381.201874 B = 6128.980160 C = 7303.073038 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.079 4.079 3 C -0.150 4.150 4 C 0.069 3.931 5 H 0.150 0.850 6 C 0.241 3.759 7 N -0.497 5.497 8 C -0.150 4.150 9 C -0.073 4.073 10 C -0.198 4.198 11 C 0.250 3.750 12 N -0.660 5.660 13 C 0.379 3.621 14 C -0.373 4.373 15 H 0.096 0.904 16 C 0.051 3.949 17 N -0.708 5.708 18 Si 0.971 3.029 19 H -0.266 1.266 20 H -0.250 1.250 21 H -0.255 1.255 22 C -0.334 4.334 23 C 0.328 3.672 24 N -0.562 5.562 25 C 0.318 3.682 26 N -0.561 5.561 27 C -0.190 4.190 28 C -0.055 4.055 29 H 0.062 0.938 30 H 0.051 0.949 31 H 0.076 0.924 32 H 0.065 0.935 33 H 0.035 0.965 34 H 0.069 0.931 35 H 0.077 0.923 36 H 0.112 0.888 37 H 0.107 0.893 38 H 0.400 0.600 39 H 0.313 0.687 40 H 0.127 0.873 41 H 0.155 0.845 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.656 19.656 1.121 21.125 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.099 4.099 3 C -0.207 4.207 4 C 0.048 3.952 5 H 0.168 0.832 6 C -0.076 4.076 7 N -0.174 5.174 8 C -0.153 4.153 9 C -0.092 4.092 10 C -0.220 4.220 11 C 0.148 3.852 12 N -0.280 5.280 13 C 0.273 3.727 14 C -0.401 4.401 15 H 0.114 0.886 16 C -0.181 4.181 17 N -0.326 5.326 18 Si 0.790 3.210 19 H -0.191 1.191 20 H -0.173 1.173 21 H -0.179 1.179 22 C -0.353 4.353 23 C 0.022 3.978 24 N -0.246 5.246 25 C 0.012 3.988 26 N -0.245 5.245 27 C -0.213 4.213 28 C -0.073 4.073 29 H 0.081 0.919 30 H 0.070 0.930 31 H 0.095 0.905 32 H 0.084 0.916 33 H 0.055 0.945 34 H 0.088 0.912 35 H 0.096 0.904 36 H 0.130 0.870 37 H 0.125 0.875 38 H 0.236 0.764 39 H 0.125 0.875 40 H 0.145 0.855 41 H 0.172 0.828 Dipole moment (debyes) X Y Z Total from point charges -5.133 18.324 1.295 19.073 hybrid contribution -0.832 -0.406 -0.576 1.090 sum -5.965 17.918 0.719 18.899 Atomic orbital electron populations 1.21762 0.92578 1.02323 1.03023 1.21128 0.97658 0.95864 0.95277 1.21914 0.99859 0.95233 1.03687 1.18044 0.79111 0.94600 1.03467 0.83224 1.29710 0.95507 0.90977 0.91368 1.81206 1.14715 1.10767 1.10668 1.19053 1.04725 0.94219 0.97305 1.20705 0.98017 0.92616 0.97816 1.20768 1.03630 0.97290 1.00323 1.17724 0.90156 0.83373 0.93959 1.41415 1.61767 1.09805 1.15007 1.16689 0.84578 0.85070 0.86339 1.20402 1.08098 1.16757 0.94817 0.88600 1.26822 0.96248 0.92832 1.02157 1.69487 1.15074 1.17942 1.30083 0.85318 0.79280 0.79373 0.76988 1.19084 1.17329 1.17927 1.13119 1.35233 1.05612 0.81348 1.24954 0.90212 0.90844 0.91780 1.81037 1.17943 1.13406 1.12171 1.25304 0.90232 0.91170 0.92073 1.81047 1.18104 1.12386 1.12943 1.20677 1.06172 0.94258 1.00147 1.20921 0.94807 0.94508 0.97084 0.91931 0.93026 0.90544 0.91612 0.94544 0.91240 0.90430 0.86957 0.87532 0.76374 0.87451 0.85477 0.82754 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.78 8.95 71.98 0.64 -1.14 16 2 C -0.08 -1.15 2.30 -10.79 -0.02 -1.18 16 3 C -0.15 -1.83 8.94 71.98 0.64 -1.19 16 4 C 0.07 1.14 2.02 -13.35 -0.03 1.11 16 5 H 0.15 1.46 7.87 -2.38 -0.02 1.44 16 6 C 0.24 5.71 12.98 89.44 1.16 6.87 16 7 N -0.50 -15.00 18.54 20.01 0.37 -14.63 16 8 C -0.15 -3.28 3.50 -19.84 -0.07 -3.35 16 9 C -0.07 -2.02 8.80 22.25 0.20 -1.82 16 10 C -0.20 -6.62 8.66 22.40 0.19 -6.42 16 11 C 0.25 8.15 4.86 38.21 0.19 8.33 16 12 N -0.66 -23.50 3.34 -179.78 -0.60 -24.10 16 13 C 0.38 15.09 4.96 39.03 0.19 15.28 16 14 C -0.37 -14.44 7.00 23.09 0.16 -14.28 16 15 H 0.10 3.90 7.01 -2.91 -0.02 3.88 16 16 C 0.05 1.73 4.99 85.55 0.43 2.16 16 17 N -0.71 -22.93 10.63 21.98 0.23 -22.69 16 18 Si 0.97 27.20 29.57 68.60 2.03 29.23 16 19 H -0.27 -7.98 7.11 99.48 0.71 -7.28 16 20 H -0.25 -6.29 7.11 99.48 0.71 -5.58 16 21 H -0.26 -7.32 7.11 99.48 0.71 -6.62 16 22 C -0.33 -14.60 5.88 -20.07 -0.12 -14.72 16 23 C 0.33 15.23 13.91 88.33 1.23 16.46 16 24 N -0.56 -27.12 18.54 19.00 0.35 -26.77 16 25 C 0.32 14.46 14.80 88.33 1.31 15.77 16 26 N -0.56 -26.55 18.54 19.00 0.35 -26.20 16 27 C -0.19 -5.04 9.90 22.40 0.22 -4.82 16 28 C -0.05 -1.14 9.66 22.25 0.21 -0.93 16 29 H 0.06 0.73 8.14 -2.39 -0.02 0.71 16 30 H 0.05 0.87 7.22 -2.39 -0.02 0.85 16 31 H 0.08 0.69 8.14 -2.39 -0.02 0.67 16 32 H 0.07 1.15 7.37 -2.39 -0.02 1.13 16 33 H 0.04 0.57 7.23 -2.38 -0.02 0.55 16 34 H 0.07 0.75 8.14 -2.39 -0.02 0.73 16 35 H 0.08 0.68 8.14 -2.39 -0.02 0.66 16 36 H 0.11 2.99 7.55 -2.91 -0.02 2.97 16 37 H 0.11 4.00 6.33 -2.91 -0.02 3.99 16 38 H 0.40 13.80 8.81 -92.71 -0.82 12.98 16 39 H 0.31 8.94 8.29 -92.70 -0.77 8.17 16 40 H 0.13 3.06 8.06 -2.91 -0.02 3.03 16 41 H 0.15 2.04 7.94 -2.91 -0.02 2.01 16 Total: -1.00 -54.29 368.82 9.56 -44.74 By element: Atomic # 1 Polarization: 24.02 SS G_CDS: 0.28 Total: 24.30 kcal Atomic # 6 Polarization: 9.59 SS G_CDS: 6.54 Total: 16.13 kcal Atomic # 7 Polarization: -115.10 SS G_CDS: 0.71 Total: -114.40 kcal Atomic # 14 Polarization: 27.20 SS G_CDS: 2.03 Total: 29.23 kcal Total: -54.29 9.56 -44.74 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001169083032.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 129.635 kcal (2) G-P(sol) polarization free energy of solvation -54.293 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 75.342 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 9.555 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.738 kcal (6) G-S(sol) free energy of system = (1) + (5) 84.898 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds