Wall clock time and date at job start Tue Mar 31 2020 12:45:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.52998 * 109.47124 * 2 1 4 4 C 1.53005 * 109.47194 * 119.99789 * 2 1 3 5 5 H 1.08996 * 109.46866 * 299.99930 * 4 2 1 6 6 C 1.47199 * 109.46708 * 59.99867 * 4 2 1 7 7 N 3.43553 * 83.99656 * 158.55094 * 2 1 3 8 8 C 1.50697 * 109.47085 * 179.97438 * 4 2 1 9 9 C 1.38288 * 119.92431 * 119.99822 * 8 4 2 10 10 C 1.38094 * 120.07623 * 179.97438 * 9 8 4 11 11 C 1.38922 * 119.92831 * 0.02562 * 10 9 8 12 12 N 1.39732 * 120.08235 * 180.02562 * 11 10 9 13 13 C 1.38292 * 120.00406 * 172.95507 * 12 11 10 14 14 C 1.39003 * 119.99847 * 300.07200 * 13 12 11 15 15 H 1.08001 * 119.99922 * 151.52687 * 14 13 12 16 16 C 1.40831 * 119.99958 * 331.52412 * 14 13 12 17 17 N 1.30343 * 120.00122 * 168.56919 * 16 14 13 18 18 Si 1.86802 * 120.00119 * 348.56542 * 16 14 13 19 19 H 1.48494 * 109.47126 * 87.55938 * 18 16 14 20 20 H 1.48498 * 109.47088 * 207.55719 * 18 16 14 21 21 H 1.48503 * 109.47105 * 327.55852 * 18 16 14 22 22 C 1.41158 * 120.00435 * 120.06902 * 13 12 11 23 23 C 1.43193 * 120.00648 * 185.15060 * 22 13 12 24 24 N 9.46331 * 159.93429 * 230.00703 * 2 1 3 25 25 C 1.43200 * 119.99622 * 5.14868 * 22 13 12 26 26 N 8.41503 * 168.01452 * 350.48850 * 2 1 3 27 27 C 1.38926 * 119.84556 * 359.97438 * 11 10 9 28 28 C 1.38098 * 119.92187 * 0.02562 * 27 11 10 29 29 H 1.09006 * 109.46964 * 299.99929 * 1 2 3 30 30 H 1.09001 * 109.47230 * 59.99667 * 1 2 3 31 31 H 1.08999 * 109.47585 * 180.02562 * 1 2 3 32 32 H 1.08997 * 109.47226 * 240.00091 * 2 1 3 33 33 H 1.08996 * 109.47478 * 59.99738 * 3 2 1 34 34 H 1.09003 * 109.47201 * 180.02562 * 3 2 1 35 35 H 1.09006 * 109.46940 * 300.00032 * 3 2 1 36 36 H 1.08006 * 119.96148 * 0.28576 * 9 8 4 37 37 H 1.08001 * 120.03819 * 180.02562 * 10 9 8 38 38 H 0.97002 * 119.99584 * 352.95612 * 12 11 10 39 39 H 0.96992 * 120.00189 * 180.02562 * 17 16 14 40 40 H 1.07997 * 120.04183 * 179.97438 * 27 11 10 41 41 H 1.08004 * 119.96326 * 180.02562 * 28 27 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7212 1.2493 5 1 1.6767 -0.2073 2.1392 6 6 1.5493 -2.1090 1.2493 7 7 1.1706 -3.1801 1.2494 8 6 3.5470 -0.7218 1.2490 9 6 4.2373 -0.1225 2.2866 10 6 5.6182 -0.1216 2.2897 11 6 6.3140 -0.7232 1.2486 12 7 7.7114 -0.7246 1.2488 13 6 8.4023 -1.4466 0.2929 14 6 8.2260 -2.8222 0.1990 15 1 8.3580 -3.3200 -0.7503 16 6 7.8754 -3.5668 1.3418 17 7 7.4935 -4.8071 1.2197 18 14 7.9578 -2.7771 3.0327 19 1 6.6712 -2.0951 3.3237 20 1 8.2058 -3.8239 4.0564 21 1 9.0620 -1.7845 3.0621 22 6 9.2865 -0.7867 -0.5876 23 6 9.9174 -1.5143 -1.6474 24 7 10.4188 -2.0867 -2.4875 25 6 9.5525 0.6105 -0.4211 26 7 9.7615 1.7235 -0.2888 27 6 5.6174 -1.3243 0.2078 28 6 4.2364 -1.3215 0.2110 29 1 -0.3633 0.5139 0.8900 30 1 -0.3634 0.5139 -0.8900 31 1 -0.3634 -1.0276 0.0005 32 1 1.8933 -0.5138 -0.8900 33 1 1.6766 1.9564 0.8899 34 1 3.1300 1.4425 -0.0005 35 1 1.6766 1.9563 -0.8900 36 1 3.6957 0.3409 3.0981 37 1 6.1567 0.3462 3.1007 38 1 8.1968 -0.2192 1.9195 39 1 7.2517 -5.3198 2.0068 40 1 6.1551 -1.7925 -0.6034 41 1 3.6942 -1.7890 -0.5977 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001169083034.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:45:20 Heat of formation + Delta-G solvation = 85.796397 kcal Electronic energy + Delta-G solvation = -25622.810186 eV Core-core repulsion = 22080.642064 eV Total energy + Delta-G solvation = -3542.168122 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 320.133 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -41.11578 -39.51770 -37.92440 -36.92016 -36.55410 -36.18468 -35.37434 -32.90087 -31.71353 -30.75788 -29.00642 -28.07636 -27.22275 -24.03929 -23.26831 -22.15740 -21.40664 -20.65004 -19.11897 -18.74908 -18.42229 -17.83414 -17.20873 -16.77179 -15.78181 -15.30289 -15.09739 -14.87355 -14.82788 -14.61198 -14.51954 -14.42378 -14.24814 -14.16853 -13.97959 -13.80943 -13.53832 -13.43005 -13.42456 -13.26756 -13.03956 -12.91091 -12.79658 -12.75070 -12.66815 -12.33391 -12.15593 -11.88746 -11.83190 -11.56225 -11.53616 -11.33231 -10.89419 -9.86108 -9.66840 -9.33583 -8.32900 -7.17385 0.27933 0.63541 0.74271 1.27914 1.45352 1.51233 1.83741 1.85613 1.98658 2.01325 2.18829 2.22595 2.53176 2.68677 2.88648 3.24132 3.35737 3.72729 3.81559 3.97109 4.08122 4.21064 4.25936 4.41288 4.49326 4.56214 4.68752 4.69349 4.76826 4.86071 4.95217 4.98925 5.10462 5.20522 5.23649 5.35360 5.39617 5.48986 5.53393 5.59182 5.63754 5.66467 5.79935 5.81809 6.10422 6.14585 6.59443 6.65347 6.77587 7.12876 7.28557 7.64588 Molecular weight = 320.13amu Principal moments of inertia in cm(-1) A = 0.012617 B = 0.004456 C = 0.003953 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2218.683055 B = 6282.706642 C = 7081.661815 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.080 4.080 3 C -0.141 4.141 4 C 0.067 3.933 5 H 0.157 0.843 6 C 0.239 3.761 7 N -0.495 5.495 8 C -0.133 4.133 9 C -0.057 4.057 10 C -0.182 4.182 11 C 0.197 3.803 12 N -0.691 5.691 13 C 0.364 3.636 14 C -0.366 4.366 15 H 0.087 0.913 16 C 0.054 3.946 17 N -0.759 5.759 18 Si 0.957 3.043 19 H -0.214 1.214 20 H -0.291 1.291 21 H -0.245 1.245 22 C -0.307 4.307 23 C 0.326 3.674 24 N -0.555 5.555 25 C 0.318 3.682 26 N -0.544 5.544 27 C -0.177 4.177 28 C -0.076 4.076 29 H 0.079 0.921 30 H 0.068 0.932 31 H 0.035 0.965 32 H 0.065 0.935 33 H 0.078 0.922 34 H 0.052 0.948 35 H 0.061 0.939 36 H 0.167 0.833 37 H 0.145 0.855 38 H 0.410 0.590 39 H 0.313 0.687 40 H 0.110 0.890 41 H 0.114 0.886 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.007 8.782 9.939 20.788 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.100 4.100 3 C -0.198 4.198 4 C 0.046 3.954 5 H 0.175 0.825 6 C -0.078 4.078 7 N -0.171 5.171 8 C -0.136 4.136 9 C -0.075 4.075 10 C -0.203 4.203 11 C 0.099 3.901 12 N -0.320 5.320 13 C 0.259 3.741 14 C -0.393 4.393 15 H 0.105 0.895 16 C -0.175 4.175 17 N -0.378 5.378 18 Si 0.778 3.222 19 H -0.137 1.137 20 H -0.219 1.219 21 H -0.169 1.169 22 C -0.325 4.325 23 C 0.019 3.981 24 N -0.238 5.238 25 C 0.011 3.989 26 N -0.226 5.226 27 C -0.199 4.199 28 C -0.095 4.095 29 H 0.098 0.902 30 H 0.087 0.913 31 H 0.054 0.946 32 H 0.083 0.917 33 H 0.097 0.903 34 H 0.071 0.929 35 H 0.080 0.920 36 H 0.185 0.815 37 H 0.162 0.838 38 H 0.249 0.751 39 H 0.125 0.875 40 H 0.128 0.872 41 H 0.132 0.868 Dipole moment (debyes) X Y Z Total from point charges -15.577 7.622 8.758 19.428 hybrid contribution 0.708 -0.476 0.266 0.894 sum -14.869 7.146 9.025 18.804 Atomic orbital electron populations 1.21914 0.93907 1.01157 1.03761 1.21138 0.96295 0.97385 0.95196 1.21778 1.01298 0.93527 1.03181 1.18116 0.90947 0.82531 1.03856 0.82548 1.29681 0.91494 0.95147 0.91480 1.81230 1.11519 1.13822 1.10554 1.19237 0.93192 1.04216 0.96934 1.21047 0.92541 0.96597 0.97326 1.20904 0.95273 1.05640 0.98519 1.17941 0.81523 0.95745 0.94903 1.42175 1.03819 1.52327 1.33636 1.16547 0.85963 0.88582 0.82978 1.19950 1.30295 0.91059 0.98010 0.89525 1.27353 0.89208 0.94878 1.06016 1.69401 1.21362 1.09974 1.37039 0.85582 0.83572 0.79213 0.73868 1.13660 1.21909 1.16903 1.12930 1.24191 0.85032 1.10387 1.24883 0.90523 0.91619 0.91083 1.80947 1.16546 1.10637 1.15687 1.25231 0.90773 0.91418 0.91450 1.81257 1.15491 1.12389 1.13513 1.20858 0.94826 1.04687 0.99515 1.20776 0.92908 0.97617 0.98201 0.90247 0.91316 0.94603 0.91661 0.90271 0.92869 0.92031 0.81517 0.83751 0.75110 0.87450 0.87232 0.86772 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.70 8.94 71.98 0.64 -1.05 16 2 C -0.08 -1.06 2.30 -10.79 -0.02 -1.09 16 3 C -0.14 -1.58 8.95 71.98 0.64 -0.94 16 4 C 0.07 0.97 2.03 -13.35 -0.03 0.95 16 5 H 0.16 1.11 7.87 -2.39 -0.02 1.09 16 6 C 0.24 5.39 12.97 89.44 1.16 6.55 16 7 N -0.49 -14.63 18.54 20.01 0.37 -14.26 16 8 C -0.13 -2.61 3.50 -19.84 -0.07 -2.68 16 9 C -0.06 -0.98 9.66 22.25 0.21 -0.76 16 10 C -0.18 -4.01 8.49 22.40 0.19 -3.82 16 11 C 0.20 5.79 4.48 38.21 0.17 5.97 16 12 N -0.69 -22.20 2.24 -179.79 -0.40 -22.60 16 13 C 0.36 14.01 4.43 39.02 0.17 14.18 16 14 C -0.37 -15.45 7.22 23.09 0.17 -15.29 16 15 H 0.09 4.20 7.36 -2.91 -0.02 4.18 16 16 C 0.05 2.17 5.36 85.55 0.46 2.63 16 17 N -0.76 -32.17 13.90 21.98 0.31 -31.86 16 18 Si 0.96 30.28 24.34 68.60 1.67 31.95 16 19 H -0.21 -5.91 5.19 99.48 0.52 -5.40 16 20 H -0.29 -9.42 7.11 99.48 0.71 -8.71 16 21 H -0.25 -7.42 6.64 99.48 0.66 -6.76 16 22 C -0.31 -12.81 5.88 -20.07 -0.12 -12.93 16 23 C 0.33 15.05 13.98 88.36 1.24 16.29 16 24 N -0.56 -27.17 18.52 18.97 0.35 -26.82 16 25 C 0.32 13.26 14.82 88.28 1.31 14.57 16 26 N -0.54 -23.36 18.57 19.06 0.35 -23.00 16 27 C -0.18 -5.64 8.84 22.40 0.20 -5.45 16 28 C -0.08 -2.01 8.79 22.25 0.20 -1.82 16 29 H 0.08 0.60 8.14 -2.38 -0.02 0.58 16 30 H 0.07 0.70 8.14 -2.39 -0.02 0.68 16 31 H 0.03 0.53 7.23 -2.39 -0.02 0.51 16 32 H 0.06 1.08 7.38 -2.39 -0.02 1.06 16 33 H 0.08 0.57 8.14 -2.39 -0.02 0.55 16 34 H 0.05 0.79 7.22 -2.39 -0.02 0.77 16 35 H 0.06 0.67 8.14 -2.38 -0.02 0.65 16 36 H 0.17 1.44 7.94 -2.91 -0.02 1.42 16 37 H 0.14 2.51 8.06 -2.91 -0.02 2.49 16 38 H 0.41 11.73 7.77 -92.71 -0.72 11.01 16 39 H 0.31 11.87 8.28 -92.71 -0.77 11.10 16 40 H 0.11 4.10 6.22 -2.91 -0.02 4.08 16 41 H 0.11 2.98 7.56 -2.91 -0.02 2.95 16 Total: -1.00 -58.35 361.15 9.31 -49.04 By element: Atomic # 1 Polarization: 22.12 SS G_CDS: 0.14 Total: 22.26 kcal Atomic # 6 Polarization: 8.79 SS G_CDS: 6.52 Total: 15.30 kcal Atomic # 7 Polarization: -119.53 SS G_CDS: 0.98 Total: -118.55 kcal Atomic # 14 Polarization: 30.28 SS G_CDS: 1.67 Total: 31.95 kcal Total: -58.35 9.31 -49.04 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001169083034.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 134.838 kcal (2) G-P(sol) polarization free energy of solvation -58.347 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 76.491 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 9.306 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -49.042 kcal (6) G-S(sol) free energy of system = (1) + (5) 85.796 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds