Wall clock time and date at job start Tue Mar 31 2020 12:10:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.37432 * 123.39297 * 2 1 4 4 C 1.33860 * 115.13136 * 179.97438 * 3 2 1 5 5 S 1.70613 * 111.01550 * 0.02562 * 4 3 2 6 6 C 1.37043 * 123.38579 * 179.70146 * 2 1 3 7 7 C 1.41583 * 125.47547 * 0.02562 * 6 2 1 8 8 C 1.35653 * 119.99940 * 180.02562 * 7 6 2 9 9 C 1.41469 * 120.00085 * 180.02562 * 8 7 6 10 10 O 1.21784 * 120.00092 * 355.02368 * 9 8 7 11 11 N 1.34782 * 120.00425 * 175.02979 * 9 8 7 12 12 C 1.47079 * 120.87735 * 4.98504 * 11 9 8 13 13 C 1.53697 * 108.27649 * 128.75942 * 12 11 9 14 14 N 1.46899 * 109.25821 * 54.07891 * 13 12 11 15 15 C 1.46894 * 111.00043 * 172.60812 * 14 13 12 16 16 C 1.50697 * 109.47060 * 294.30373 * 15 14 13 17 17 H 1.08000 * 120.00422 * 0.02562 * 16 15 14 18 18 C 1.37887 * 119.99825 * 179.97438 * 16 15 14 19 19 N 1.31515 * 119.99867 * 179.97438 * 18 16 15 20 20 Si 1.86798 * 119.99854 * 0.02562 * 18 16 15 21 21 H 1.48494 * 109.47357 * 89.99889 * 20 18 16 22 22 H 1.48508 * 109.46782 * 210.00174 * 20 18 16 23 23 H 1.48496 * 109.47073 * 329.99712 * 20 18 16 24 24 C 1.46895 * 111.26947 * 296.76013 * 14 13 12 25 25 C 1.47077 * 120.88425 * 185.26746 * 11 9 8 26 26 H 1.08996 * 109.47011 * 90.02053 * 1 2 3 27 27 H 1.09008 * 109.46762 * 330.02858 * 1 2 3 28 28 H 1.08996 * 109.47206 * 210.02683 * 1 2 3 29 29 H 1.07996 * 122.43382 * 359.97438 * 3 2 1 30 30 H 1.07997 * 124.49583 * 180.02562 * 4 3 2 31 31 H 1.07999 * 120.00414 * 359.97438 * 7 6 2 32 32 H 1.07999 * 120.00115 * 359.97438 * 8 7 6 33 33 H 1.09001 * 109.62858 * 248.52603 * 12 11 9 34 34 H 1.09001 * 109.62648 * 9.10163 * 12 11 9 35 35 H 1.08995 * 109.64233 * 294.07566 * 13 12 11 36 36 H 1.08995 * 109.41988 * 173.94772 * 13 12 11 37 37 H 1.09004 * 109.47292 * 54.30523 * 15 14 13 38 38 H 1.09000 * 109.47070 * 174.29869 * 15 14 13 39 39 H 0.97000 * 119.99914 * 179.97438 * 19 18 16 40 40 H 1.08998 * 109.49513 * 303.14664 * 24 14 13 41 41 H 1.08999 * 109.51513 * 183.07779 * 24 14 13 42 42 H 1.09005 * 109.62956 * 350.89003 * 25 11 9 43 43 H 1.08997 * 109.63198 * 111.46809 * 25 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2634 1.1474 0.0000 4 6 3.5881 0.9551 0.0005 5 16 3.9647 -0.7089 0.0004 6 6 2.2611 -1.1443 0.0060 7 6 1.7505 -2.4648 0.0123 8 6 2.6016 -3.5211 0.0184 9 6 2.0915 -4.8406 0.0242 10 8 0.8918 -5.0292 0.1153 11 7 2.9331 -5.8890 -0.0709 12 6 4.3903 -5.6895 -0.0720 13 6 5.0049 -6.6184 0.9872 14 7 4.5671 -7.9977 0.7346 15 6 5.2682 -8.9420 1.6147 16 6 6.7353 -8.9549 1.2706 17 1 7.1096 -8.3243 0.4778 18 6 7.6000 -9.7710 1.9689 19 7 8.8803 -9.7826 1.6683 20 14 6.9527 -10.8611 3.3407 21 1 6.5561 -12.1781 2.7811 22 1 8.0143 -11.0559 4.3608 23 1 5.7732 -10.2157 3.9710 24 6 3.1108 -8.1288 0.8752 25 6 2.4187 -7.2624 -0.1824 26 1 -0.3633 -0.0004 -1.0276 27 1 -0.3633 0.8903 0.5134 28 1 -0.3633 -0.8897 0.5142 29 1 1.8211 2.1327 -0.0004 30 1 4.3213 1.7480 0.0010 31 1 0.6834 -2.6313 0.0132 32 1 3.6687 -3.3547 0.0180 33 1 4.7926 -5.9337 -1.0552 34 1 4.6180 -4.6519 0.1724 35 1 4.6779 -6.3090 1.9798 36 1 6.0919 -6.5653 0.9289 37 1 5.1411 -8.6342 2.6526 38 1 4.8542 -9.9411 1.4788 39 1 9.4886 -10.3564 2.1597 40 1 2.8102 -7.7984 1.8695 41 1 2.8239 -9.1711 0.7361 42 1 1.3423 -7.2653 -0.0109 43 1 2.6350 -7.6548 -1.1760 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001177074182.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:10:57 Heat of formation + Delta-G solvation = 29.169304 kcal Electronic energy + Delta-G solvation = -23832.150040 eV Core-core repulsion = 20390.677583 eV Total energy + Delta-G solvation = -3441.472457 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 320.130 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -40.18224 -38.83021 -37.65746 -34.47217 -34.28310 -32.41811 -31.20363 -30.64420 -28.91735 -27.78225 -25.73983 -24.20548 -23.38232 -22.56590 -21.32585 -20.21863 -19.34398 -18.42960 -17.49336 -16.90262 -16.83352 -15.85653 -15.50472 -15.15626 -14.65385 -14.52731 -14.43080 -14.13740 -14.00349 -13.63361 -13.45713 -13.30879 -12.93571 -12.73163 -12.58049 -12.42825 -12.31575 -12.03112 -11.95390 -11.54747 -11.17335 -11.12710 -10.96406 -10.77915 -10.68802 -10.58136 -10.34183 -9.92533 -9.73409 -9.35450 -8.74385 -8.61834 -8.56734 -8.19721 -7.46551 -6.10278 -4.08143 -0.09114 1.26083 1.55613 1.67536 2.44680 3.18770 3.25589 3.33358 3.35364 3.44110 4.37921 4.52146 4.53981 4.59368 4.79046 4.88602 4.93149 5.10101 5.20866 5.22231 5.28556 5.33981 5.37369 5.47497 5.56841 5.57144 5.60278 5.72354 5.76040 5.86250 5.99352 6.00636 6.13331 6.18177 6.22378 6.37149 6.43602 6.64712 6.80254 6.91616 7.51516 7.54088 7.81372 7.94352 8.27081 8.58712 8.96821 9.51368 11.02523 Molecular weight = 320.13amu Principal moments of inertia in cm(-1) A = 0.019989 B = 0.002633 C = 0.002406 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1400.431403 B =10631.501527 C =11636.530175 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.100 4.100 2 C -0.068 4.068 3 C -0.142 4.142 4 C -0.243 4.243 5 S 0.200 5.800 6 C -0.203 4.203 7 C 0.019 3.981 8 C -0.222 4.222 9 C 0.552 3.448 10 O -0.560 6.560 11 N -0.604 5.604 12 C 0.108 3.892 13 C 0.049 3.951 14 N -0.527 5.527 15 C 0.162 3.838 16 C -0.511 4.511 17 H 0.082 0.918 18 C 0.069 3.931 19 N -0.899 5.899 20 Si 0.874 3.126 21 H -0.275 1.275 22 H -0.286 1.286 23 H -0.268 1.268 24 C 0.038 3.962 25 C 0.119 3.881 26 H 0.075 0.925 27 H 0.070 0.930 28 H 0.072 0.928 29 H 0.140 0.860 30 H 0.166 0.834 31 H 0.145 0.855 32 H 0.127 0.873 33 H 0.079 0.921 34 H 0.082 0.918 35 H 0.026 0.974 36 H 0.103 0.897 37 H -0.011 1.011 38 H 0.026 0.974 39 H 0.264 0.736 40 H 0.027 0.973 41 H 0.081 0.919 42 H 0.089 0.911 43 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.633 21.215 -3.958 25.527 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C -0.082 4.082 3 C -0.173 4.173 4 C -0.380 4.380 5 S 0.471 5.529 6 C -0.320 4.320 7 C -0.003 4.003 8 C -0.245 4.245 9 C 0.344 3.656 10 O -0.442 6.442 11 N -0.337 5.337 12 C -0.015 4.015 13 C -0.080 4.080 14 N -0.251 5.251 15 C 0.036 3.964 16 C -0.550 4.550 17 H 0.100 0.900 18 C -0.132 4.132 19 N -0.538 5.538 20 Si 0.702 3.298 21 H -0.201 1.201 22 H -0.212 1.212 23 H -0.193 1.193 24 C -0.091 4.091 25 C -0.004 4.004 26 H 0.094 0.906 27 H 0.089 0.911 28 H 0.091 0.909 29 H 0.158 0.842 30 H 0.183 0.817 31 H 0.162 0.838 32 H 0.145 0.855 33 H 0.097 0.903 34 H 0.100 0.900 35 H 0.044 0.956 36 H 0.122 0.878 37 H 0.006 0.994 38 H 0.044 0.956 39 H 0.074 0.926 40 H 0.046 0.954 41 H 0.100 0.900 42 H 0.108 0.892 43 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges -12.520 20.104 -4.339 24.078 hybrid contribution -1.387 0.470 1.635 2.195 sum -13.907 20.574 -2.704 24.980 Atomic orbital electron populations 1.20568 0.89229 1.03271 1.02775 1.19654 0.97320 0.91190 1.00003 1.19852 0.92608 0.99553 1.05333 1.25263 1.00664 1.02258 1.09845 1.83269 1.04502 0.97547 1.67630 1.22482 0.96941 0.96934 1.15646 1.20671 1.00682 0.88505 0.90450 1.22144 1.00428 0.93133 1.08800 1.16876 0.86151 0.85412 0.77140 1.90789 1.15143 1.86568 1.51735 1.48144 1.07164 1.06825 1.71518 1.22181 0.78568 0.99641 1.01128 1.22457 1.02034 0.88393 0.95072 1.61889 1.02571 1.04798 1.55880 1.20179 0.95411 0.91033 0.89750 1.21006 0.89425 1.25253 1.19278 0.90035 1.24893 0.94755 0.96648 0.96950 1.69887 1.02768 1.39657 1.41444 0.86873 0.78903 0.81526 0.82523 1.20097 1.21184 1.19319 1.22456 0.90197 0.99786 0.96677 1.21724 0.98945 0.80056 0.99687 0.90604 0.91066 0.90902 0.84240 0.81664 0.83759 0.85506 0.90264 0.89990 0.95565 0.87844 0.99353 0.95600 0.92605 0.95443 0.90044 0.89224 0.90766 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -0.67 9.89 36.00 0.36 -0.31 16 2 C -0.07 -0.60 5.92 -105.35 -0.62 -1.22 16 3 C -0.14 -1.10 9.97 -41.41 -0.41 -1.52 16 4 C -0.24 -1.84 10.92 29.19 0.32 -1.53 16 5 S 0.20 1.75 21.77 -107.50 -2.34 -0.59 16 6 C -0.20 -2.03 6.21 -38.74 -0.24 -2.27 16 7 C 0.02 0.21 8.94 -39.23 -0.35 -0.14 16 8 C -0.22 -2.77 8.68 -39.28 -0.34 -3.11 16 9 C 0.55 8.49 7.46 -15.03 -0.11 8.38 16 10 O -0.56 -10.04 15.57 5.11 0.08 -9.96 16 11 N -0.60 -9.26 3.00 -175.63 -0.53 -9.79 16 12 C 0.11 1.55 6.49 -3.36 -0.02 1.53 16 13 C 0.05 0.89 5.47 -3.46 -0.02 0.87 16 14 N -0.53 -10.63 4.62 -235.48 -1.09 -11.72 16 15 C 0.16 3.84 3.79 -4.98 -0.02 3.82 16 16 C -0.51 -14.03 8.96 -34.44 -0.31 -14.34 16 17 H 0.08 2.40 7.37 -52.49 -0.39 2.02 16 18 C 0.07 1.96 5.47 -17.82 -0.10 1.86 16 19 N -0.90 -26.90 13.96 55.43 0.77 -26.13 16 20 Si 0.87 21.16 27.47 -169.99 -4.67 16.49 16 21 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 22 H -0.29 -6.88 7.11 56.52 0.40 -6.47 16 23 H -0.27 -6.31 6.54 56.52 0.37 -5.94 16 24 C 0.04 0.66 5.62 -3.70 -0.02 0.64 16 25 C 0.12 1.83 6.61 -3.60 -0.02 1.80 16 26 H 0.08 0.45 8.14 -51.93 -0.42 0.03 16 27 H 0.07 0.37 8.14 -51.92 -0.42 -0.05 16 28 H 0.07 0.51 7.05 -51.93 -0.37 0.14 16 29 H 0.14 0.79 8.06 -52.49 -0.42 0.37 16 30 H 0.17 0.88 8.06 -52.49 -0.42 0.46 16 31 H 0.14 1.63 6.47 -52.49 -0.34 1.29 16 32 H 0.13 1.39 4.82 -52.49 -0.25 1.14 16 33 H 0.08 1.13 8.14 -51.93 -0.42 0.70 16 34 H 0.08 0.97 5.45 -51.93 -0.28 0.69 16 35 H 0.03 0.48 8.14 -51.93 -0.42 0.06 16 36 H 0.10 2.03 6.67 -51.93 -0.35 1.68 16 37 H -0.01 -0.27 7.18 -51.93 -0.37 -0.65 16 38 H 0.03 0.61 7.40 -51.93 -0.38 0.23 16 39 H 0.26 7.42 8.31 -40.82 -0.34 7.08 16 40 H 0.03 0.49 8.14 -51.93 -0.42 0.07 16 41 H 0.08 1.32 7.99 -51.93 -0.41 0.90 16 42 H 0.09 1.36 7.04 -51.93 -0.37 1.00 16 43 H 0.07 1.10 8.14 -51.93 -0.42 0.67 16 LS Contribution 358.25 15.07 5.40 5.40 Total: -1.00 -32.22 358.25 -10.35 -42.57 By element: Atomic # 1 Polarization: 5.32 SS G_CDS: -6.06 Total: -0.74 kcal Atomic # 6 Polarization: -3.62 SS G_CDS: -1.92 Total: -5.54 kcal Atomic # 7 Polarization: -46.79 SS G_CDS: -0.84 Total: -47.63 kcal Atomic # 8 Polarization: -10.04 SS G_CDS: 0.08 Total: -9.96 kcal Atomic # 14 Polarization: 21.16 SS G_CDS: -4.67 Total: 16.49 kcal Atomic # 16 Polarization: 1.75 SS G_CDS: -2.34 Total: -0.59 kcal Total LS contribution 5.40 Total: 5.40 kcal Total: -32.22 -10.35 -42.57 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001177074182.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 71.740 kcal (2) G-P(sol) polarization free energy of solvation -32.221 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 39.519 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.350 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.571 kcal (6) G-S(sol) free energy of system = (1) + (5) 29.169 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds