Wall clock time and date at job start Tue Mar 31 2020 12:48:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52999 * 109.47365 * 2 1 4 4 C 1.52998 * 109.47014 * 180.02562 * 3 2 1 5 5 N 1.46507 * 109.46978 * 179.97438 * 4 3 2 6 6 C 1.37035 * 119.99526 * 269.99746 * 5 4 3 7 7 H 1.08003 * 119.99740 * 141.10546 * 6 5 4 8 8 C 1.38892 * 120.00036 * 321.10309 * 6 5 4 9 9 N 1.31471 * 120.00061 * 340.20015 * 8 6 5 10 10 Si 1.86804 * 119.99656 * 160.19496 * 8 6 5 11 11 H 1.48500 * 109.46962 * 90.00327 * 10 8 6 12 12 H 1.48507 * 109.46621 * 209.99809 * 10 8 6 13 13 H 1.48495 * 109.47463 * 330.00088 * 10 8 6 14 14 C 1.34770 * 120.00476 * 89.99381 * 5 4 3 15 15 S 1.71208 * 119.99619 * 5.20396 * 14 5 4 16 16 N 1.34772 * 120.00543 * 185.20082 * 14 5 4 17 17 C 1.39187 * 119.99980 * 71.73019 * 16 14 5 18 18 C 1.39258 * 119.90313 * 9.18194 * 17 16 14 19 19 C 1.36578 * 120.10403 * 180.23205 * 18 17 16 20 20 C 1.40089 * 119.89316 * 359.46873 * 19 18 17 21 21 C 1.46809 * 120.09176 * 180.30203 * 20 19 18 22 22 C 1.50703 * 119.99663 * 175.31002 * 21 20 19 23 23 O 1.21299 * 120.00605 * 355.31015 * 21 20 19 24 24 C 1.40074 * 119.80816 * 0.27546 * 20 19 18 25 25 C 1.36586 * 119.89752 * 0.02562 * 24 20 19 26 26 H 1.09002 * 109.46689 * 60.00268 * 1 2 3 27 27 H 1.08994 * 109.47245 * 180.02562 * 1 2 3 28 28 H 1.08996 * 109.46931 * 300.00466 * 1 2 3 29 29 H 1.09002 * 109.47340 * 239.99495 * 2 1 3 30 30 H 1.09002 * 109.46689 * 119.99732 * 2 1 3 31 31 H 1.09002 * 109.47304 * 59.99473 * 3 2 1 32 32 H 1.09000 * 109.46487 * 299.99461 * 3 2 1 33 33 H 1.08997 * 109.47832 * 59.99960 * 4 3 2 34 34 H 1.09000 * 109.46988 * 299.99074 * 4 3 2 35 35 H 0.97001 * 119.99678 * 185.03444 * 9 8 6 36 36 H 0.97003 * 120.00177 * 251.74275 * 16 14 5 37 37 H 1.08004 * 119.94811 * 359.97438 * 18 17 16 38 38 H 1.07993 * 120.05158 * 179.74427 * 19 18 17 39 39 H 1.09002 * 109.47148 * 4.68438 * 22 21 20 40 40 H 1.08998 * 109.46873 * 124.68147 * 22 21 20 41 41 H 1.08999 * 109.47160 * 244.68474 * 22 21 20 42 42 H 1.07990 * 120.05224 * 180.02562 * 24 20 19 43 43 H 1.08001 * 119.94865 * 179.97438 * 25 24 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 3.5701 1.4424 -0.0006 5 7 4.0585 2.8236 -0.0013 6 6 4.2864 3.4691 -1.1884 7 1 4.0328 4.5138 -1.2923 8 6 4.8435 2.7800 -2.2578 9 7 5.5025 1.6619 -2.0477 10 14 4.6563 3.4417 -3.9947 11 1 5.7935 4.3446 -4.3056 12 1 4.6451 2.3104 -4.9567 13 1 3.3817 4.1958 -4.1024 14 6 4.2835 3.4594 1.1655 15 16 4.1272 2.6130 2.6455 16 7 4.6317 4.7614 1.1674 17 6 3.6903 5.7340 0.8430 18 6 2.3496 5.3837 0.7045 19 6 1.4232 6.3338 0.3816 20 6 1.8217 7.6646 0.2007 21 6 0.8285 8.6906 -0.1399 22 6 1.2405 10.1375 -0.2301 23 8 -0.3236 8.3740 -0.3487 24 6 3.1705 8.0134 0.3464 25 6 4.0911 7.0555 0.6633 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3633 -1.0276 0.0005 28 1 -0.3633 0.5139 0.8899 29 1 1.8934 -0.5139 -0.8899 30 1 1.8933 -0.5138 0.8900 31 1 1.6767 1.9564 0.8899 32 1 1.6768 1.9562 -0.8901 33 1 3.9331 0.9287 -0.8908 34 1 3.9337 0.9285 0.8892 35 1 5.9535 1.2192 -2.7836 36 1 5.5383 5.0207 1.3946 37 1 2.0426 4.3582 0.8484 38 1 0.3844 6.0605 0.2703 39 1 2.3190 10.2173 -0.0943 40 1 0.9672 10.5327 -1.2085 41 1 0.7331 10.7088 0.5473 42 1 3.4820 9.0381 0.2083 43 1 5.1313 7.3234 0.7754 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001196549186.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:48:27 Heat of formation + Delta-G solvation = -16.221558 kcal Electronic energy + Delta-G solvation = -24919.357819 eV Core-core repulsion = 21475.917066 eV Total energy + Delta-G solvation = -3443.440753 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 320.130 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -41.48908 -40.42356 -39.12694 -36.89238 -35.70884 -34.30565 -32.59920 -31.74623 -30.24139 -29.56876 -27.96524 -25.62588 -24.22652 -23.66679 -22.82997 -22.12613 -20.78870 -19.80443 -18.99946 -18.26320 -18.14589 -17.42030 -16.90547 -16.38949 -16.12310 -15.88735 -15.70503 -15.47452 -15.22841 -14.75934 -14.51901 -14.31004 -14.09713 -14.03401 -13.74345 -13.63990 -13.40050 -13.13633 -12.96410 -12.88936 -12.51057 -12.45490 -12.23484 -12.19554 -12.02928 -11.88700 -11.74631 -11.53249 -11.28150 -10.77361 -10.66387 -10.07205 -9.18362 -8.93351 -8.71438 -8.32535 -6.66344 -0.23397 0.24497 0.49685 1.26727 1.37471 1.44652 1.51222 1.57233 2.04998 2.33635 2.56692 2.82475 2.98313 3.28987 3.77799 3.93311 3.95197 3.98532 4.15031 4.25240 4.32944 4.38275 4.47894 4.56567 4.64538 4.70295 4.74408 4.80290 4.85064 4.88031 4.92282 4.98698 5.07946 5.15949 5.20390 5.25073 5.27284 5.35497 5.38850 5.45069 5.51292 5.70737 5.89494 6.18909 6.43502 6.59080 6.68300 6.91180 8.00896 Molecular weight = 320.13amu Principal moments of inertia in cm(-1) A = 0.009864 B = 0.004863 C = 0.004463 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2837.790248 B = 5756.680420 C = 6272.480919 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.111 4.111 3 C -0.109 4.109 4 C 0.084 3.916 5 N -0.276 5.276 6 C -0.349 4.349 7 H 0.118 0.882 8 C 0.034 3.966 9 N -0.827 5.827 10 Si 0.996 3.004 11 H -0.255 1.255 12 H -0.263 1.263 13 H -0.259 1.259 14 C 0.439 3.561 15 S -0.858 6.858 16 N -0.646 5.646 17 C 0.237 3.763 18 C -0.205 4.205 19 C -0.026 4.026 20 C -0.246 4.246 21 C 0.400 3.600 22 C -0.192 4.192 23 O -0.522 6.522 24 C -0.008 4.008 25 C -0.193 4.193 26 H 0.057 0.943 27 H 0.073 0.927 28 H 0.046 0.954 29 H 0.070 0.930 30 H 0.058 0.942 31 H 0.042 0.958 32 H 0.058 0.942 33 H 0.109 0.891 34 H 0.080 0.920 35 H 0.301 0.699 36 H 0.421 0.579 37 H 0.090 0.910 38 H 0.116 0.884 39 H 0.111 0.889 40 H 0.101 0.899 41 H 0.105 0.895 42 H 0.183 0.817 43 H 0.160 0.840 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.152 11.181 -6.720 13.221 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.149 4.149 3 C -0.147 4.147 4 C -0.040 4.040 5 N 0.052 4.948 6 C -0.484 4.484 7 H 0.136 0.864 8 C -0.181 4.181 9 N -0.455 5.455 10 Si 0.815 3.185 11 H -0.179 1.179 12 H -0.187 1.187 13 H -0.182 1.182 14 C 0.080 3.920 15 S -0.727 6.727 16 N -0.275 5.275 17 C 0.132 3.868 18 C -0.228 4.228 19 C -0.046 4.046 20 C -0.250 4.250 21 C 0.284 3.716 22 C -0.249 4.249 23 O -0.403 6.403 24 C -0.027 4.027 25 C -0.215 4.215 26 H 0.076 0.924 27 H 0.092 0.908 28 H 0.065 0.935 29 H 0.089 0.911 30 H 0.077 0.923 31 H 0.061 0.939 32 H 0.077 0.923 33 H 0.127 0.873 34 H 0.098 0.902 35 H 0.112 0.888 36 H 0.262 0.738 37 H 0.108 0.892 38 H 0.134 0.866 39 H 0.129 0.871 40 H 0.120 0.880 41 H 0.124 0.876 42 H 0.200 0.800 43 H 0.178 0.822 Dipole moment (debyes) X Y Z Total from point charges -2.827 9.909 -6.178 12.014 hybrid contribution 0.489 -0.083 -0.811 0.951 sum -2.337 9.825 -6.989 12.282 Atomic orbital electron populations 1.21707 0.94157 1.02553 1.01671 1.21359 0.97092 0.94264 1.02217 1.21666 0.93242 0.99065 1.00768 1.22345 0.94882 0.81649 1.05112 1.44306 1.34684 1.11525 1.04295 1.20587 1.41908 0.98372 0.87573 0.86427 1.26593 0.91858 0.94954 1.04731 1.69915 1.22320 1.16495 1.36720 0.84879 0.80353 0.79065 0.74221 1.17907 1.18742 1.18237 1.20512 0.97285 0.86582 0.87628 1.92644 1.82965 1.72541 1.24554 1.41083 1.13337 1.01177 1.71888 1.18476 0.88426 0.89669 0.90268 1.20286 0.92561 0.99570 1.10416 1.20825 0.98681 0.92534 0.92514 1.20478 0.96489 0.94207 1.13784 1.22935 0.86212 0.92741 0.69760 1.22255 1.05837 0.91143 1.05632 1.90509 1.23020 1.85595 1.41192 1.21378 0.89833 1.00719 0.90747 1.20721 1.02319 0.89730 1.08779 0.92406 0.90773 0.93451 0.91132 0.92292 0.93910 0.92321 0.87330 0.90221 0.88795 0.73830 0.89207 0.86570 0.87052 0.88020 0.87624 0.79971 0.82242 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.80 9.91 71.98 0.71 -3.09 16 2 C -0.11 -3.53 5.93 30.59 0.18 -3.34 16 3 C -0.11 -4.24 5.54 30.59 0.17 -4.07 16 4 C 0.08 3.72 4.84 86.38 0.42 4.14 16 5 N -0.28 -12.63 2.41 -523.25 -1.26 -13.89 16 6 C -0.35 -15.10 8.53 84.04 0.72 -14.39 16 7 H 0.12 5.01 6.21 -2.91 -0.02 4.99 16 8 C 0.03 1.40 4.98 84.90 0.42 1.82 16 9 N -0.83 -35.79 11.46 21.66 0.25 -35.54 16 10 Si 1.00 31.69 29.60 68.60 2.03 33.72 16 11 H -0.25 -7.76 7.11 99.48 0.71 -7.05 16 12 H -0.26 -8.09 7.11 99.48 0.71 -7.38 16 13 H -0.26 -8.34 7.11 99.48 0.71 -7.63 16 14 C 0.44 20.75 5.39 179.06 0.97 21.72 16 15 S -0.86 -47.10 28.79 -56.49 -1.63 -48.73 16 16 N -0.65 -25.62 4.65 -189.96 -0.88 -26.50 16 17 C 0.24 8.36 5.08 38.46 0.20 8.55 16 18 C -0.21 -7.95 8.72 22.13 0.19 -7.76 16 19 C -0.03 -0.91 9.54 22.33 0.21 -0.70 16 20 C -0.25 -6.76 5.87 -20.14 -0.12 -6.88 16 21 C 0.40 10.07 7.21 27.93 0.20 10.27 16 22 C -0.19 -2.56 10.19 71.24 0.73 -1.84 16 23 O -0.52 -17.62 17.09 -3.09 -0.05 -17.67 16 24 C -0.01 -0.18 9.39 22.33 0.21 0.03 16 25 C -0.19 -4.91 9.83 22.13 0.22 -4.69 16 26 H 0.06 1.45 8.14 -2.39 -0.02 1.43 16 27 H 0.07 1.63 8.14 -2.39 -0.02 1.61 16 28 H 0.05 1.31 8.14 -2.39 -0.02 1.29 16 29 H 0.07 2.07 8.14 -2.39 -0.02 2.05 16 30 H 0.06 1.94 8.14 -2.39 -0.02 1.92 16 31 H 0.04 1.86 8.14 -2.39 -0.02 1.84 16 32 H 0.06 2.25 8.14 -2.39 -0.02 2.23 16 33 H 0.11 4.87 5.55 -2.39 -0.01 4.85 16 34 H 0.08 3.95 6.46 -2.39 -0.02 3.94 16 35 H 0.30 11.79 8.32 -92.71 -0.77 11.02 16 36 H 0.42 14.91 8.82 -92.71 -0.82 14.09 16 37 H 0.09 4.07 6.98 -2.91 -0.02 4.05 16 38 H 0.12 4.12 7.65 -2.91 -0.02 4.10 16 39 H 0.11 0.82 5.61 -2.39 -0.01 0.80 16 40 H 0.10 1.18 8.14 -2.39 -0.02 1.16 16 41 H 0.11 1.19 8.14 -2.39 -0.02 1.17 16 42 H 0.18 1.93 5.93 -2.92 -0.02 1.91 16 43 H 0.16 3.03 8.06 -2.91 -0.02 3.01 16 Total: -1.00 -67.53 369.12 4.10 -63.44 By element: Atomic # 1 Polarization: 45.17 SS G_CDS: 0.21 Total: 45.38 kcal Atomic # 6 Polarization: -5.63 SS G_CDS: 5.42 Total: -0.21 kcal Atomic # 7 Polarization: -74.03 SS G_CDS: -1.89 Total: -75.93 kcal Atomic # 8 Polarization: -17.62 SS G_CDS: -0.05 Total: -17.67 kcal Atomic # 14 Polarization: 31.69 SS G_CDS: 2.03 Total: 33.72 kcal Atomic # 16 Polarization: -47.10 SS G_CDS: -1.63 Total: -48.73 kcal Total: -67.53 4.10 -63.44 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001196549186.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 47.215 kcal (2) G-P(sol) polarization free energy of solvation -67.532 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.317 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.095 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.437 kcal (6) G-S(sol) free energy of system = (1) + (5) -16.222 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds