Wall clock time and date at job start Tue Mar 31 2020 12:47:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52997 * 109.46939 * 2 1 4 4 C 1.53000 * 109.46939 * 180.02562 * 3 2 1 5 5 N 1.46903 * 109.46919 * 179.97438 * 4 3 2 6 6 C 1.46898 * 110.99849 * 298.48056 * 5 4 3 7 7 C 1.50698 * 109.47300 * 293.24891 * 6 5 4 8 8 H 1.07998 * 120.00045 * 354.96069 * 7 6 5 9 9 C 1.37875 * 120.00220 * 174.96191 * 7 6 5 10 10 N 1.31515 * 119.99798 * 359.97438 * 9 7 6 11 11 Si 1.86795 * 120.00362 * 180.02562 * 9 7 6 12 12 H 1.48502 * 109.47092 * 59.99756 * 11 9 7 13 13 H 1.48498 * 109.47215 * 179.97438 * 11 9 7 14 14 H 1.48499 * 109.47231 * 299.99992 * 11 9 7 15 15 C 1.46902 * 111.00378 * 62.43597 * 5 4 3 16 16 C 1.50701 * 109.46855 * 66.04701 * 15 5 4 17 17 C 1.34245 * 125.03186 * 264.97428 * 16 15 5 18 18 C 1.46489 * 107.00415 * 180.02562 * 17 16 15 19 19 C 1.39636 * 134.01576 * 180.32614 * 18 17 16 20 20 C 1.36718 * 119.75597 * 180.20858 * 19 18 17 21 21 Cl 1.73599 * 119.74997 * 179.73357 * 20 19 18 22 22 C 1.38933 * 120.49943 * 359.45245 * 20 19 18 23 23 C 1.37741 * 120.65255 * 0.25674 * 22 20 19 24 24 C 1.39123 * 119.79891 * 0.02562 * 23 22 20 25 25 N 1.36820 * 125.03671 * 85.00264 * 16 15 5 26 26 H 0.97003 * 125.06850 * 359.93558 * 25 16 15 27 27 H 1.08999 * 109.47192 * 60.00381 * 1 2 3 28 28 H 1.08999 * 109.47113 * 180.02562 * 1 2 3 29 29 H 1.08994 * 109.47504 * 300.00186 * 1 2 3 30 30 H 1.08997 * 109.47008 * 239.99874 * 2 1 3 31 31 H 1.09007 * 109.46882 * 119.99768 * 2 1 3 32 32 H 1.09006 * 109.47472 * 59.99875 * 3 2 1 33 33 H 1.09007 * 109.47144 * 299.99608 * 3 2 1 34 34 H 1.08996 * 109.47222 * 59.96829 * 4 3 2 35 35 H 1.09005 * 109.47073 * 299.96339 * 4 3 2 36 36 H 1.08999 * 109.47139 * 53.24944 * 6 5 4 37 37 H 1.09000 * 109.47000 * 173.24631 * 6 5 4 38 38 H 0.97002 * 120.00421 * 180.02562 * 10 9 7 39 39 H 1.09000 * 109.46688 * 306.05138 * 15 5 4 40 40 H 1.08994 * 109.47266 * 186.04539 * 15 5 4 41 41 H 1.07997 * 126.49818 * 0.02646 * 17 16 15 42 42 H 1.08000 * 120.12170 * 359.93753 * 19 18 17 43 43 H 1.07993 * 119.67235 * 180.28433 * 22 20 19 44 44 H 1.08004 * 120.10084 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 3.5699 1.4425 -0.0006 5 7 4.0596 2.8275 -0.0013 6 6 3.6179 3.5414 -1.2067 7 6 4.2835 2.9412 -2.4182 8 1 5.0271 2.1673 -2.2980 9 6 3.9432 3.3800 -3.6802 10 7 3.0373 4.3221 -3.8267 11 14 4.7676 2.6356 -5.1819 12 1 4.4951 1.1764 -5.2239 13 1 4.2298 3.2746 -6.4098 14 1 6.2331 2.8634 -5.1061 15 6 3.6373 3.5358 1.2145 16 6 4.3088 2.9187 2.4142 17 6 3.7682 1.9723 3.1979 18 6 4.7533 1.6625 4.2370 19 6 4.7786 0.7779 5.3171 20 6 5.8782 0.7286 6.1281 21 17 5.9067 -0.3662 7.4750 22 6 6.9751 1.5440 5.8791 23 6 6.9726 2.4191 4.8154 24 6 5.8617 2.4897 3.9808 25 7 5.5594 3.2405 2.8663 26 1 6.1459 3.8988 2.4620 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3633 -1.0277 0.0005 29 1 -0.3634 0.5138 0.8899 30 1 1.8933 -0.5138 -0.8899 31 1 1.8933 -0.5138 0.8901 32 1 1.6766 1.9564 0.8900 33 1 1.6766 1.9563 -0.8901 34 1 3.9329 0.9283 -0.8905 35 1 3.9337 0.9291 0.8895 36 1 2.5360 3.4531 -1.3054 37 1 3.8907 4.5937 -1.1262 38 1 2.7975 4.6306 -4.7145 39 1 2.5555 3.4575 1.3233 40 1 3.9200 4.5858 1.1399 41 1 2.7923 1.5242 3.0839 42 1 3.9310 0.1381 5.5137 43 1 7.8385 1.4909 6.5256 44 1 7.8304 3.0486 4.6298 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001209723660.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:47:28 Heat of formation + Delta-G solvation = 36.093090 kcal Electronic energy + Delta-G solvation = -24258.069175 eV Core-core repulsion = 20814.853250 eV Total energy + Delta-G solvation = -3443.215926 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 320.135 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -41.30114 -38.04284 -37.12824 -35.88689 -33.93009 -32.64756 -31.97638 -29.92046 -29.15269 -28.34138 -27.02227 -24.91476 -23.36028 -22.29888 -21.64576 -21.15465 -20.41385 -19.31368 -17.66652 -16.55894 -16.30781 -15.50837 -15.41163 -14.85056 -14.73927 -14.43940 -14.29034 -13.94591 -13.79866 -13.48075 -13.06210 -12.84127 -12.76010 -12.50673 -12.43275 -12.16307 -11.89366 -11.38209 -11.30608 -11.18371 -11.00950 -10.87593 -10.81262 -10.74924 -10.67252 -10.55985 -10.48436 -9.99588 -9.77794 -9.71806 -9.31308 -8.49345 -8.09007 -7.69698 -7.29112 -6.09010 -4.10307 1.01350 1.41133 2.14720 2.75491 3.18422 3.29146 3.33664 3.36600 3.74408 4.37501 4.59967 4.78236 4.94114 5.04728 5.21820 5.26807 5.29591 5.31303 5.33794 5.44457 5.50947 5.57639 5.73246 5.83035 5.88051 5.92853 5.96204 6.11437 6.12547 6.20186 6.20678 6.27212 6.28221 6.44022 6.55133 6.62379 6.71459 6.82893 6.92935 7.11609 7.20645 7.33936 7.58835 7.72422 7.97767 8.08585 8.44020 8.97190 9.54181 11.01405 Molecular weight = 320.14amu Principal moments of inertia in cm(-1) A = 0.015756 B = 0.002970 C = 0.002697 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1776.632869 B = 9424.288827 C =10379.983931 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.117 4.117 3 C -0.156 4.156 4 C 0.064 3.936 5 N -0.531 5.531 6 C 0.189 3.811 7 C -0.506 4.506 8 H 0.062 0.938 9 C 0.057 3.943 10 N -0.898 5.898 11 Si 0.896 3.104 12 H -0.277 1.277 13 H -0.288 1.288 14 H -0.277 1.277 15 C 0.099 3.901 16 C 0.126 3.874 17 C -0.208 4.208 18 C -0.093 4.093 19 C -0.062 4.062 20 C -0.062 4.062 21 Cl -0.085 7.085 22 C -0.101 4.101 23 C -0.113 4.113 24 C 0.098 3.902 25 N -0.578 5.578 26 H 0.418 0.582 27 H 0.053 0.947 28 H 0.047 0.953 29 H 0.049 0.951 30 H 0.060 0.940 31 H 0.055 0.945 32 H 0.051 0.949 33 H 0.076 0.924 34 H 0.080 0.920 35 H 0.058 0.942 36 H 0.007 0.993 37 H 0.024 0.976 38 H 0.262 0.738 39 H 0.060 0.940 40 H 0.078 0.922 41 H 0.145 0.855 42 H 0.129 0.871 43 H 0.131 0.869 44 H 0.127 0.873 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.085 -5.020 17.673 18.490 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.155 4.155 3 C -0.195 4.195 4 C -0.065 4.065 5 N -0.254 5.254 6 C 0.065 3.935 7 C -0.545 4.545 8 H 0.080 0.920 9 C -0.144 4.144 10 N -0.538 5.538 11 Si 0.724 3.276 12 H -0.202 1.202 13 H -0.214 1.214 14 H -0.202 1.202 15 C -0.030 4.030 16 C 0.016 3.984 17 C -0.233 4.233 18 C -0.099 4.099 19 C -0.082 4.082 20 C -0.090 4.090 21 Cl -0.056 7.056 22 C -0.121 4.121 23 C -0.133 4.133 24 C -0.011 4.011 25 N -0.179 5.179 26 H 0.256 0.744 27 H 0.073 0.927 28 H 0.066 0.934 29 H 0.068 0.932 30 H 0.079 0.921 31 H 0.073 0.927 32 H 0.070 0.930 33 H 0.094 0.906 34 H 0.099 0.901 35 H 0.077 0.923 36 H 0.024 0.976 37 H 0.042 0.958 38 H 0.072 0.928 39 H 0.078 0.922 40 H 0.097 0.903 41 H 0.163 0.837 42 H 0.147 0.853 43 H 0.149 0.851 44 H 0.145 0.855 Dipole moment (debyes) X Y Z Total from point charges 2.568 -4.893 17.531 18.381 hybrid contribution -0.190 -0.083 -1.012 1.033 sum 2.378 -4.976 16.519 17.415 Atomic orbital electron populations 1.21767 0.96581 1.00800 1.01609 1.21409 0.95189 0.97438 1.01503 1.22235 0.98705 0.96494 1.02100 1.22079 0.91724 0.90837 1.01833 1.62417 1.59289 1.02308 1.01430 1.19812 0.94948 0.93479 0.85289 1.21058 1.22321 1.21175 0.89903 0.92007 1.24953 0.95224 0.95205 0.99032 1.69935 1.31778 1.28884 1.23181 0.86591 0.79756 0.79351 0.81914 1.20237 1.21373 1.20227 1.20810 0.96974 0.97766 0.87433 1.20518 0.84691 0.97149 0.96008 1.21389 1.00741 1.03411 0.97738 1.19032 0.94989 0.98574 0.97268 1.20056 0.97182 0.97945 0.92984 1.20175 0.97292 0.98142 0.93370 1.98340 1.98710 1.63188 1.45411 1.20548 0.97563 0.96036 0.97954 1.19931 0.96663 1.01496 0.95258 1.18280 0.96403 0.95707 0.90688 1.41823 1.15625 1.36195 1.24287 0.74411 0.92748 0.93407 0.93223 0.92080 0.92665 0.92994 0.90562 0.90149 0.92330 0.97550 0.95821 0.92846 0.92245 0.90317 0.83711 0.85261 0.85076 0.85481 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.92 9.91 37.16 0.37 -1.55 16 2 C -0.12 -1.67 5.93 -26.73 -0.16 -1.83 16 3 C -0.16 -2.59 4.56 -26.73 -0.12 -2.71 16 4 C 0.06 1.15 4.93 -3.82 -0.02 1.13 16 5 N -0.53 -10.33 4.69 -237.52 -1.11 -11.45 16 6 C 0.19 4.52 4.51 -4.98 -0.02 4.50 16 7 C -0.51 -13.45 8.40 -34.44 -0.29 -13.74 16 8 H 0.06 1.65 7.35 -52.49 -0.39 1.27 16 9 C 0.06 1.56 5.46 -17.82 -0.10 1.46 16 10 N -0.90 -25.61 13.29 55.43 0.74 -24.87 16 11 Si 0.90 21.08 29.54 -169.99 -5.02 16.06 16 12 H -0.28 -6.43 7.11 56.52 0.40 -6.02 16 13 H -0.29 -6.74 7.11 56.52 0.40 -6.34 16 14 H -0.28 -6.46 7.11 56.52 0.40 -6.06 16 15 C 0.10 1.58 5.27 -4.97 -0.03 1.55 16 16 C 0.13 1.82 5.86 -81.77 -0.48 1.34 16 17 C -0.21 -2.91 9.79 -37.67 -0.37 -3.28 16 18 C -0.09 -1.28 6.37 -105.14 -0.67 -1.95 16 19 C -0.06 -0.78 9.81 -39.61 -0.39 -1.16 16 20 C -0.06 -0.73 6.28 -39.87 -0.25 -0.98 16 21 Cl -0.09 -0.90 28.93 -51.86 -1.50 -2.40 16 22 C -0.10 -1.09 9.79 -39.51 -0.39 -1.48 16 23 C -0.11 -1.25 10.07 -39.43 -0.40 -1.65 16 24 C 0.10 1.29 7.28 -83.97 -0.61 0.68 16 25 N -0.58 -7.62 6.07 -6.94 -0.04 -7.66 16 26 H 0.42 4.77 8.96 -40.82 -0.37 4.40 16 27 H 0.05 0.73 8.14 -51.93 -0.42 0.31 16 28 H 0.05 0.54 8.14 -51.93 -0.42 0.12 16 29 H 0.05 0.59 8.14 -51.93 -0.42 0.17 16 30 H 0.06 0.91 8.14 -51.93 -0.42 0.49 16 31 H 0.05 0.72 8.14 -51.93 -0.42 0.30 16 32 H 0.05 0.80 6.33 -51.93 -0.33 0.47 16 33 H 0.08 1.51 6.29 -51.93 -0.33 1.18 16 34 H 0.08 1.64 6.97 -51.93 -0.36 1.28 16 35 H 0.06 1.00 6.38 -51.93 -0.33 0.67 16 36 H 0.01 0.17 6.01 -51.93 -0.31 -0.14 16 37 H 0.02 0.61 7.92 -51.93 -0.41 0.19 16 38 H 0.26 7.14 8.31 -40.82 -0.34 6.80 16 39 H 0.06 0.92 6.07 -51.93 -0.32 0.61 16 40 H 0.08 1.22 7.92 -51.93 -0.41 0.81 16 41 H 0.15 1.87 8.06 -52.49 -0.42 1.45 16 42 H 0.13 1.42 8.06 -52.49 -0.42 1.00 16 43 H 0.13 1.13 8.06 -52.49 -0.42 0.71 16 44 H 0.13 1.11 8.06 -52.48 -0.42 0.69 16 LS Contribution 369.54 15.07 5.57 5.57 Total: -1.00 -28.31 369.54 -11.78 -40.09 By element: Atomic # 1 Polarization: 10.82 SS G_CDS: -6.49 Total: 4.33 kcal Atomic # 6 Polarization: -15.74 SS G_CDS: -3.92 Total: -19.66 kcal Atomic # 7 Polarization: -43.56 SS G_CDS: -0.42 Total: -43.98 kcal Atomic # 14 Polarization: 21.08 SS G_CDS: -5.02 Total: 16.06 kcal Atomic # 17 Polarization: -0.90 SS G_CDS: -1.50 Total: -2.40 kcal Total LS contribution 5.57 Total: 5.57 kcal Total: -28.31 -11.78 -40.09 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001209723660.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 76.182 kcal (2) G-P(sol) polarization free energy of solvation -28.308 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 47.874 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.780 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.089 kcal (6) G-S(sol) free energy of system = (1) + (5) 36.093 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds