Wall clock time and date at job start Tue Mar 31 2020 12:47:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52997 * 109.46939 * 2 1 4 4 C 1.53000 * 109.46939 * 180.02562 * 3 2 1 5 5 N 1.46903 * 109.46919 * 179.97438 * 4 3 2 6 6 C 1.46898 * 110.99849 * 298.48056 * 5 4 3 7 7 C 1.50698 * 109.47300 * 293.24891 * 6 5 4 8 8 H 1.07998 * 120.00045 * 354.96069 * 7 6 5 9 9 C 1.37875 * 120.00220 * 174.96191 * 7 6 5 10 10 N 1.31515 * 119.99798 * 359.97438 * 9 7 6 11 11 Si 1.86795 * 120.00362 * 180.02562 * 9 7 6 12 12 H 1.48502 * 109.47092 * 59.99756 * 11 9 7 13 13 H 1.48498 * 109.47215 * 179.97438 * 11 9 7 14 14 H 1.48499 * 109.47231 * 299.99992 * 11 9 7 15 15 C 1.46902 * 111.00378 * 62.43597 * 5 4 3 16 16 C 1.50701 * 109.46855 * 66.04701 * 15 5 4 17 17 C 1.34245 * 125.03186 * 264.97428 * 16 15 5 18 18 C 1.46489 * 107.00415 * 180.02562 * 17 16 15 19 19 C 1.39636 * 134.01576 * 180.32614 * 18 17 16 20 20 C 1.36718 * 119.75597 * 180.20858 * 19 18 17 21 21 Cl 1.73599 * 119.74997 * 179.73357 * 20 19 18 22 22 C 1.38933 * 120.49943 * 359.45245 * 20 19 18 23 23 C 1.37741 * 120.65255 * 0.25674 * 22 20 19 24 24 C 1.39123 * 119.79891 * 0.02562 * 23 22 20 25 25 N 1.36820 * 125.03671 * 85.00264 * 16 15 5 26 26 H 0.97003 * 125.06850 * 359.93558 * 25 16 15 27 27 H 1.08999 * 109.47192 * 60.00381 * 1 2 3 28 28 H 1.08999 * 109.47113 * 180.02562 * 1 2 3 29 29 H 1.08994 * 109.47504 * 300.00186 * 1 2 3 30 30 H 1.08997 * 109.47008 * 239.99874 * 2 1 3 31 31 H 1.09007 * 109.46882 * 119.99768 * 2 1 3 32 32 H 1.09006 * 109.47472 * 59.99875 * 3 2 1 33 33 H 1.09007 * 109.47144 * 299.99608 * 3 2 1 34 34 H 1.08996 * 109.47222 * 59.96829 * 4 3 2 35 35 H 1.09005 * 109.47073 * 299.96339 * 4 3 2 36 36 H 1.08999 * 109.47139 * 53.24944 * 6 5 4 37 37 H 1.09000 * 109.47000 * 173.24631 * 6 5 4 38 38 H 0.97002 * 120.00421 * 180.02562 * 10 9 7 39 39 H 1.09000 * 109.46688 * 306.05138 * 15 5 4 40 40 H 1.08994 * 109.47266 * 186.04539 * 15 5 4 41 41 H 1.07997 * 126.49818 * 0.02646 * 17 16 15 42 42 H 1.08000 * 120.12170 * 359.93753 * 19 18 17 43 43 H 1.07993 * 119.67235 * 180.28433 * 22 20 19 44 44 H 1.08004 * 120.10084 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 3.5699 1.4425 -0.0006 5 7 4.0596 2.8275 -0.0013 6 6 3.6179 3.5414 -1.2067 7 6 4.2835 2.9412 -2.4182 8 1 5.0271 2.1673 -2.2980 9 6 3.9432 3.3800 -3.6802 10 7 3.0373 4.3221 -3.8267 11 14 4.7676 2.6356 -5.1819 12 1 4.4951 1.1764 -5.2239 13 1 4.2298 3.2746 -6.4098 14 1 6.2331 2.8634 -5.1061 15 6 3.6373 3.5358 1.2145 16 6 4.3088 2.9187 2.4142 17 6 3.7682 1.9723 3.1979 18 6 4.7533 1.6625 4.2370 19 6 4.7786 0.7779 5.3171 20 6 5.8782 0.7286 6.1281 21 17 5.9067 -0.3662 7.4750 22 6 6.9751 1.5440 5.8791 23 6 6.9726 2.4191 4.8154 24 6 5.8617 2.4897 3.9808 25 7 5.5594 3.2405 2.8663 26 1 6.1459 3.8988 2.4620 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3633 -1.0277 0.0005 29 1 -0.3634 0.5138 0.8899 30 1 1.8933 -0.5138 -0.8899 31 1 1.8933 -0.5138 0.8901 32 1 1.6766 1.9564 0.8900 33 1 1.6766 1.9563 -0.8901 34 1 3.9329 0.9283 -0.8905 35 1 3.9337 0.9291 0.8895 36 1 2.5360 3.4531 -1.3054 37 1 3.8907 4.5937 -1.1262 38 1 2.7975 4.6306 -4.7145 39 1 2.5555 3.4575 1.3233 40 1 3.9200 4.5858 1.1399 41 1 2.7923 1.5242 3.0839 42 1 3.9310 0.1381 5.5137 43 1 7.8385 1.4909 6.5256 44 1 7.8304 3.0486 4.6298 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001209723660.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:47:28 Heat of formation + Delta-G solvation = 21.876078 kcal Electronic energy + Delta-G solvation = -24258.685671 eV Core-core repulsion = 20814.853250 eV Total energy + Delta-G solvation = -3443.832422 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 320.135 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -42.30880 -39.36004 -38.20542 -36.80418 -35.33187 -34.52631 -32.97251 -31.16121 -30.17243 -29.77510 -28.52135 -26.30662 -25.02553 -23.34429 -22.73644 -22.34309 -21.63540 -20.68373 -18.67351 -18.31740 -17.53336 -16.97240 -16.65442 -16.30290 -16.08422 -15.77654 -15.33394 -15.10988 -14.94220 -14.77442 -14.23483 -14.07065 -13.99253 -13.72414 -13.63000 -13.42016 -13.19662 -12.98400 -12.77796 -12.50161 -12.47279 -12.26931 -12.23507 -12.04846 -11.88264 -11.72413 -11.71151 -11.57987 -11.28384 -11.21405 -10.71778 -10.57622 -9.10011 -8.91703 -8.65064 -8.18071 -6.26624 0.07569 0.48056 1.26923 1.40815 1.42101 1.49899 1.67807 2.18722 2.40927 2.80789 3.14836 3.40860 3.69222 3.81574 4.05444 4.07420 4.10437 4.26014 4.30871 4.35864 4.44374 4.50568 4.52326 4.57287 4.75044 4.85257 4.87943 4.92788 4.96745 5.00742 5.04391 5.16566 5.25304 5.25802 5.29214 5.36053 5.41190 5.50101 5.56800 5.68176 5.69717 5.79517 6.07942 6.10657 6.34082 6.59394 6.65135 6.89139 7.42332 8.91500 Molecular weight = 320.14amu Principal moments of inertia in cm(-1) A = 0.015756 B = 0.002970 C = 0.002697 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1776.632869 B = 9424.288827 C =10379.983931 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.114 4.114 3 C -0.145 4.145 4 C 0.071 3.929 5 N -0.537 5.537 6 C 0.206 3.794 7 C -0.517 4.517 8 H 0.056 0.944 9 C 0.007 3.993 10 N -0.931 5.931 11 Si 0.958 3.042 12 H -0.270 1.270 13 H -0.284 1.284 14 H -0.271 1.271 15 C 0.105 3.895 16 C 0.110 3.890 17 C -0.205 4.205 18 C -0.115 4.115 19 C -0.069 4.069 20 C -0.068 4.068 21 Cl -0.076 7.076 22 C -0.097 4.097 23 C -0.114 4.114 24 C 0.087 3.913 25 N -0.577 5.577 26 H 0.424 0.576 27 H 0.039 0.961 28 H 0.066 0.934 29 H 0.060 0.940 30 H 0.050 0.950 31 H 0.074 0.926 32 H 0.066 0.934 33 H 0.038 0.962 34 H 0.052 0.948 35 H 0.075 0.925 36 H -0.014 1.014 37 H 0.001 0.999 38 H 0.263 0.737 39 H 0.064 0.936 40 H 0.078 0.922 41 H 0.153 0.847 42 H 0.139 0.861 43 H 0.156 0.844 44 H 0.152 0.848 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.005 -6.290 19.291 20.512 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.152 4.152 3 C -0.184 4.184 4 C -0.057 4.057 5 N -0.260 5.260 6 C 0.080 3.920 7 C -0.555 4.555 8 H 0.074 0.926 9 C -0.191 4.191 10 N -0.572 5.572 11 Si 0.784 3.216 12 H -0.196 1.196 13 H -0.210 1.210 14 H -0.196 1.196 15 C -0.023 4.023 16 C 0.001 3.999 17 C -0.231 4.231 18 C -0.121 4.121 19 C -0.088 4.088 20 C -0.096 4.096 21 Cl -0.047 7.047 22 C -0.116 4.116 23 C -0.134 4.134 24 C -0.021 4.021 25 N -0.179 5.179 26 H 0.263 0.737 27 H 0.058 0.942 28 H 0.085 0.915 29 H 0.079 0.921 30 H 0.068 0.932 31 H 0.093 0.907 32 H 0.084 0.916 33 H 0.057 0.943 34 H 0.071 0.929 35 H 0.093 0.907 36 H 0.004 0.996 37 H 0.019 0.981 38 H 0.072 0.928 39 H 0.082 0.918 40 H 0.096 0.904 41 H 0.171 0.829 42 H 0.157 0.843 43 H 0.173 0.827 44 H 0.170 0.830 Dipole moment (debyes) X Y Z Total from point charges 3.500 -6.170 19.169 20.439 hybrid contribution -0.432 0.281 -1.358 1.453 sum 3.068 -5.890 17.811 19.008 Atomic orbital electron populations 1.21740 0.95247 1.02024 1.01452 1.21392 0.96363 0.95558 1.01907 1.22091 0.97445 0.98042 1.00837 1.21987 0.92753 0.89834 1.01138 1.62262 1.59691 1.02837 1.01258 1.19426 0.93371 0.92463 0.86749 1.21355 1.22115 1.20871 0.91192 0.92571 1.25748 0.95798 0.95592 1.01940 1.70050 1.33135 1.30189 1.23799 0.85604 0.78899 0.78730 0.78414 1.19561 1.20975 1.19580 1.20715 0.97485 0.97558 0.86542 1.20182 0.85625 0.98178 0.95938 1.21553 1.01116 1.02809 0.97577 1.19194 0.95288 0.99627 0.97962 1.20201 0.97925 0.97928 0.92789 1.20349 0.97382 0.98334 0.93489 1.98346 1.98686 1.62856 1.44811 1.20885 0.97946 0.95017 0.97798 1.20251 0.96788 1.01685 0.94695 1.18579 0.97070 0.95643 0.90834 1.41791 1.15299 1.36401 1.24445 0.73740 0.94187 0.91488 0.92134 0.93153 0.90726 0.91579 0.94346 0.92907 0.90657 0.99605 0.98059 0.92815 0.91798 0.90362 0.82888 0.84292 0.82669 0.83036 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.57 9.91 71.98 0.71 -2.86 16 2 C -0.11 -3.16 5.93 30.59 0.18 -2.97 16 3 C -0.15 -4.86 4.56 30.59 0.14 -4.72 16 4 C 0.07 2.60 4.93 86.30 0.43 3.03 16 5 N -0.54 -21.40 4.69 -905.37 -4.24 -25.64 16 6 C 0.21 10.24 4.51 85.56 0.39 10.63 16 7 C -0.52 -28.26 8.40 25.60 0.21 -28.05 16 8 H 0.06 3.07 7.35 -2.91 -0.02 3.05 16 9 C 0.01 0.41 5.46 84.65 0.46 0.88 16 10 N -0.93 -54.43 13.29 21.45 0.28 -54.15 16 11 Si 0.96 43.66 29.54 68.60 2.03 45.68 16 12 H -0.27 -11.96 7.11 99.48 0.71 -11.26 16 13 H -0.28 -12.70 7.11 99.48 0.71 -11.99 16 14 H -0.27 -12.00 7.11 99.48 0.71 -11.29 16 15 C 0.11 3.40 5.27 85.56 0.45 3.85 16 16 C 0.11 3.13 5.86 40.87 0.24 3.37 16 17 C -0.21 -5.51 9.79 23.51 0.23 -5.28 16 18 C -0.12 -3.01 6.37 -20.20 -0.13 -3.14 16 19 C -0.07 -1.59 9.81 22.25 0.22 -1.37 16 20 C -0.07 -1.43 6.28 22.08 0.14 -1.29 16 21 Cl -0.08 -1.43 28.93 -2.72 -0.08 -1.51 16 22 C -0.10 -1.81 9.79 22.32 0.22 -1.59 16 23 C -0.11 -2.24 10.07 22.36 0.23 -2.02 16 24 C 0.09 2.16 7.28 39.02 0.28 2.45 16 25 N -0.58 -14.70 6.07 -175.88 -1.07 -15.77 16 26 H 0.42 9.38 8.96 -92.71 -0.83 8.55 16 27 H 0.04 1.07 8.14 -2.39 -0.02 1.05 16 28 H 0.07 1.37 8.14 -2.39 -0.02 1.35 16 29 H 0.06 1.33 8.14 -2.39 -0.02 1.31 16 30 H 0.05 1.49 8.14 -2.39 -0.02 1.47 16 31 H 0.07 1.79 8.14 -2.38 -0.02 1.77 16 32 H 0.07 2.00 6.33 -2.38 -0.02 1.99 16 33 H 0.04 1.58 6.29 -2.38 -0.01 1.56 16 34 H 0.05 2.21 6.97 -2.39 -0.02 2.20 16 35 H 0.08 2.52 6.38 -2.38 -0.02 2.50 16 36 H -0.01 -0.73 6.01 -2.39 -0.01 -0.75 16 37 H 0.00 0.07 7.92 -2.39 -0.02 0.05 16 38 H 0.26 14.61 8.31 -92.71 -0.77 13.84 16 39 H 0.06 2.00 6.07 -2.39 -0.01 1.98 16 40 H 0.08 2.49 7.92 -2.39 -0.02 2.48 16 41 H 0.15 3.71 8.06 -2.91 -0.02 3.68 16 42 H 0.14 2.80 8.06 -2.91 -0.02 2.78 16 43 H 0.16 2.11 8.06 -2.91 -0.02 2.09 16 44 H 0.15 2.18 8.06 -2.91 -0.02 2.16 16 Total: -1.00 -61.40 369.54 1.50 -59.90 By element: Atomic # 1 Polarization: 20.40 SS G_CDS: 0.18 Total: 20.58 kcal Atomic # 6 Polarization: -33.49 SS G_CDS: 4.40 Total: -29.09 kcal Atomic # 7 Polarization: -90.53 SS G_CDS: -5.03 Total: -95.56 kcal Atomic # 14 Polarization: 43.66 SS G_CDS: 2.03 Total: 45.68 kcal Atomic # 17 Polarization: -1.43 SS G_CDS: -0.08 Total: -1.51 kcal Total: -61.40 1.50 -59.90 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001209723660.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 81.773 kcal (2) G-P(sol) polarization free energy of solvation -61.396 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 20.377 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.499 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.897 kcal (6) G-S(sol) free energy of system = (1) + (5) 21.876 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds