Wall clock time and date at job start Tue Mar 31 2020 12:45:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52991 * 109.47266 * 2 1 4 4 C 1.52995 * 109.47340 * 179.97438 * 3 2 1 5 5 H 1.09006 * 109.47423 * 55.00017 * 4 3 2 6 6 O 1.42904 * 109.47342 * 294.99857 * 4 3 2 7 7 C 1.35633 * 116.99660 * 94.11757 * 6 4 3 8 8 C 1.38668 * 120.16174 * 2.32403 * 7 6 4 9 9 C 1.38101 * 120.08630 * 179.74549 * 8 7 6 10 10 C 1.38683 * 120.41845 * 0.55255 * 9 8 7 11 11 C 1.37701 * 120.32312 * 359.70568 * 10 9 8 12 12 C 1.39845 * 119.89887 * 0.02562 * 11 10 9 13 13 C 1.47531 * 120.20265 * 180.02562 * 12 11 10 14 14 O 1.21817 * 120.00145 * 179.97438 * 13 12 11 15 15 C 1.41829 * 120.00470 * 359.97438 * 13 12 11 16 16 H 1.08006 * 119.99384 * 0.02562 * 15 13 12 17 17 C 1.40316 * 120.00598 * 179.97438 * 15 13 12 18 18 N 1.30543 * 119.99777 * 0.02562 * 17 15 13 19 19 Si 1.86803 * 120.00423 * 180.02562 * 17 15 13 20 20 H 1.48497 * 109.46647 * 0.02562 * 19 17 15 21 21 H 1.48497 * 109.46973 * 119.99960 * 19 17 15 22 22 H 1.48495 * 109.47281 * 240.00028 * 19 17 15 23 23 C 1.50700 * 109.47420 * 174.99922 * 4 3 2 24 24 O 1.20822 * 120.00166 * 114.99821 * 23 4 3 25 25 O 1.34228 * 119.99992 * 294.99781 * 23 4 3 26 26 C 1.45206 * 116.99979 * 179.97438 * 25 23 4 27 27 C 1.53005 * 109.46680 * 180.02562 * 26 25 23 28 28 H 1.09004 * 109.46767 * 180.02562 * 1 2 3 29 29 H 1.08998 * 109.47156 * 300.00269 * 1 2 3 30 30 H 1.09000 * 109.46802 * 60.00479 * 1 2 3 31 31 H 1.08998 * 109.47156 * 239.99731 * 2 1 3 32 32 H 1.09004 * 109.46611 * 119.99994 * 2 1 3 33 33 H 1.08998 * 109.47252 * 59.99790 * 3 2 1 34 34 H 1.09004 * 109.47300 * 299.99572 * 3 2 1 35 35 H 1.07996 * 119.95846 * 0.02562 * 8 7 6 36 36 H 1.08005 * 119.78721 * 180.25899 * 9 8 7 37 37 H 1.08004 * 119.83694 * 179.71933 * 10 9 8 38 38 H 1.08000 * 120.05129 * 179.97438 * 11 10 9 39 39 H 0.97008 * 120.00151 * 180.02562 * 18 17 15 40 40 H 1.09001 * 109.47240 * 300.00274 * 26 25 23 41 41 H 1.08999 * 109.47025 * 60.00513 * 26 25 23 42 42 H 1.09005 * 109.46787 * 179.97438 * 27 26 25 43 43 H 1.09001 * 109.47239 * 299.99945 * 27 26 25 44 44 H 1.08999 * 109.47242 * 60.00316 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 6 3.5700 1.4424 0.0006 5 1 3.9338 0.8528 -0.8410 6 8 4.0459 0.8733 1.2220 7 6 4.3330 -0.4523 1.2128 8 6 4.2076 -1.1842 0.0417 9 6 4.5054 -2.5327 0.0328 10 6 4.9202 -3.1678 1.1938 11 6 5.0454 -2.4587 2.3675 12 6 4.7528 -1.0914 2.3904 13 6 4.8852 -0.3249 3.6440 14 8 4.6298 0.8661 3.6597 15 6 5.3100 -0.9747 4.8310 16 1 5.5368 -2.0305 4.8170 17 6 5.4364 -0.2456 6.0233 18 7 5.1627 1.0307 6.0400 19 14 5.9965 -1.1013 7.5865 20 1 6.2422 -2.5382 7.3033 21 1 7.2503 -0.4718 8.0733 22 1 4.9430 -0.9740 8.6252 23 6 4.0724 2.8578 -0.1232 24 8 4.6903 3.3612 0.7849 25 8 3.8335 3.5593 -1.2424 26 6 4.3467 4.9167 -1.2918 27 6 3.9784 5.5526 -2.6338 28 1 -0.3633 -1.0277 0.0005 29 1 -0.3633 0.5139 0.8899 30 1 -0.3633 0.5138 -0.8900 31 1 1.8934 -0.5139 -0.8899 32 1 1.8933 -0.5139 0.8900 33 1 1.6767 1.9563 0.8899 34 1 1.6768 1.9563 -0.8900 35 1 3.8811 -0.6981 -0.8657 36 1 4.4101 -3.0972 -0.8830 37 1 5.1462 -4.2238 1.1773 38 1 5.3684 -2.9578 3.2691 39 1 5.2505 1.5348 6.8641 40 1 3.9096 5.5001 -0.4814 41 1 5.4311 4.8993 -1.1830 42 1 4.3633 6.5718 -2.6707 43 1 4.4153 4.9692 -3.4443 44 1 2.8940 5.5700 -2.7422 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001233523423.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:45:24 Heat of formation + Delta-G solvation = -139.768571 kcal Electronic energy + Delta-G solvation = -27631.852031 eV Core-core repulsion = 23708.008256 eV Total energy + Delta-G solvation = -3923.843775 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 320.150 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -40.68742 -39.56388 -37.35949 -36.28177 -35.93083 -34.61827 -32.54583 -31.92910 -30.60899 -30.25916 -28.81655 -26.62047 -25.21939 -23.31578 -22.98721 -22.00942 -21.21168 -20.25142 -19.73250 -17.95505 -17.25343 -16.58184 -16.56157 -16.29972 -15.52047 -15.34649 -15.05646 -14.49209 -14.35470 -13.90891 -13.75561 -13.56153 -13.27479 -13.14601 -12.88475 -12.72559 -12.46089 -12.34820 -11.98526 -11.85610 -11.76880 -11.53473 -11.43463 -11.32487 -11.23614 -11.06980 -10.89567 -10.75428 -10.64580 -10.52175 -10.31782 -10.17459 -10.01917 -9.87852 -8.89372 -8.20522 -7.47245 -7.27704 -6.16181 -4.76941 1.79217 2.00256 2.34907 2.40520 3.09841 3.18484 3.22679 3.85039 4.08408 4.08862 4.58024 4.68272 4.74861 4.80367 4.84312 4.89875 5.12501 5.17259 5.19338 5.29576 5.37673 5.54357 5.55918 5.60212 5.62959 5.69768 5.78836 5.84695 5.89007 5.91080 5.93183 6.13362 6.17473 6.27588 6.31223 6.41839 6.47464 6.66345 6.87448 6.91994 7.14832 7.35045 7.43557 7.90308 8.05121 8.13145 8.91131 8.95760 10.45294 10.68989 Molecular weight = 320.15amu Principal moments of inertia in cm(-1) A = 0.011573 B = 0.004294 C = 0.003595 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2418.839489 B = 6518.758562 C = 7787.628630 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.128 4.128 3 C -0.131 4.131 4 C 0.086 3.914 5 H 0.107 0.893 6 O -0.238 6.238 7 C 0.147 3.853 8 C -0.230 4.230 9 C -0.092 4.092 10 C -0.172 4.172 11 C -0.058 4.058 12 C -0.129 4.129 13 C 0.386 3.614 14 O -0.509 6.509 15 C -0.522 4.522 16 H 0.072 0.928 17 C 0.080 3.920 18 N -0.736 5.736 19 Si 0.903 3.097 20 H -0.261 1.261 21 H -0.274 1.274 22 H -0.274 1.274 23 C 0.455 3.545 24 O -0.462 6.462 25 O -0.361 6.361 26 C 0.060 3.940 27 C -0.150 4.150 28 H 0.055 0.945 29 H 0.055 0.945 30 H 0.051 0.949 31 H 0.065 0.935 32 H 0.075 0.925 33 H 0.082 0.918 34 H 0.085 0.915 35 H 0.123 0.877 36 H 0.114 0.886 37 H 0.115 0.885 38 H 0.136 0.864 39 H 0.272 0.728 40 H 0.071 0.929 41 H 0.070 0.930 42 H 0.078 0.922 43 H 0.065 0.935 44 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.198 -0.219 -16.024 16.847 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.165 4.165 3 C -0.168 4.168 4 C 0.028 3.972 5 H 0.124 0.876 6 O -0.150 6.150 7 C 0.101 3.899 8 C -0.249 4.249 9 C -0.110 4.110 10 C -0.191 4.191 11 C -0.076 4.076 12 C -0.131 4.131 13 C 0.279 3.721 14 O -0.395 6.395 15 C -0.553 4.553 16 H 0.090 0.910 17 C -0.143 4.143 18 N -0.365 5.365 19 Si 0.727 3.273 20 H -0.185 1.185 21 H -0.200 1.200 22 H -0.200 1.200 23 C 0.295 3.705 24 O -0.345 6.345 25 O -0.279 6.279 26 C -0.013 4.013 27 C -0.207 4.207 28 H 0.074 0.926 29 H 0.074 0.926 30 H 0.070 0.930 31 H 0.083 0.917 32 H 0.094 0.906 33 H 0.101 0.899 34 H 0.103 0.897 35 H 0.140 0.860 36 H 0.132 0.868 37 H 0.133 0.867 38 H 0.154 0.846 39 H 0.083 0.917 40 H 0.089 0.911 41 H 0.088 0.912 42 H 0.097 0.903 43 H 0.085 0.915 44 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -5.129 0.896 -15.518 16.368 hybrid contribution 0.439 -0.514 0.564 0.880 sum -4.690 0.382 -14.954 15.677 Atomic orbital electron populations 1.21731 0.95475 1.01675 1.01666 1.21698 0.96249 0.95520 1.03049 1.22059 0.91428 0.99271 1.04074 1.21751 0.95756 0.89079 0.90664 0.87594 1.86615 1.78784 1.20265 1.29321 1.19392 0.94462 0.82317 0.93738 1.21114 1.10687 0.95933 0.97129 1.20779 0.98804 0.93632 0.97797 1.20972 1.05076 0.99652 0.93361 1.21425 0.95639 0.92723 0.97862 1.21606 1.00892 0.94574 0.96039 1.18035 0.80962 0.88136 0.84949 1.90612 1.47474 1.15716 1.85744 1.20910 1.43014 0.96937 0.94486 0.90999 1.25957 0.93513 0.94437 1.00344 1.69997 1.31723 1.07289 1.27460 0.86379 0.78870 0.80562 0.81456 1.18458 1.19973 1.19964 1.23329 0.78172 0.88681 0.80353 1.90801 1.35143 1.69729 1.38779 1.86439 1.73207 1.27870 1.40411 1.23027 0.99521 0.79430 0.99345 1.21795 1.02925 1.00390 0.95590 0.92602 0.92554 0.92956 0.91665 0.90629 0.89931 0.89679 0.85960 0.86774 0.86682 0.84646 0.91731 0.91072 0.91166 0.90290 0.91543 0.91500 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.67 9.91 37.16 0.37 -1.30 16 2 C -0.13 -1.71 4.47 -26.73 -0.12 -1.83 16 3 C -0.13 -1.86 4.90 -26.74 -0.13 -1.99 16 4 C 0.09 1.47 2.68 -27.89 -0.07 1.40 16 5 H 0.11 1.51 5.38 -51.93 -0.28 1.23 16 6 O -0.24 -5.47 7.29 -48.84 -0.36 -5.82 16 7 C 0.15 3.17 5.35 -38.61 -0.21 2.96 16 8 C -0.23 -3.84 7.15 -39.47 -0.28 -4.12 16 9 C -0.09 -1.40 10.04 -39.47 -0.40 -1.79 16 10 C -0.17 -2.81 10.02 -39.61 -0.40 -3.21 16 11 C -0.06 -1.17 9.43 -39.18 -0.37 -1.54 16 12 C -0.13 -3.12 5.90 -104.69 -0.62 -3.74 16 13 C 0.39 11.35 6.91 -34.42 -0.24 11.11 16 14 O -0.51 -16.95 13.71 -16.75 -0.23 -17.18 16 15 C -0.52 -14.71 8.86 -37.43 -0.33 -15.04 16 16 H 0.07 1.82 6.02 -52.48 -0.32 1.51 16 17 C 0.08 2.22 5.50 -17.32 -0.10 2.13 16 18 N -0.74 -22.04 11.73 55.56 0.65 -21.38 16 19 Si 0.90 19.82 29.56 -169.99 -5.03 14.80 16 20 H -0.26 -5.48 7.11 56.52 0.40 -5.08 16 21 H -0.27 -5.93 7.11 56.52 0.40 -5.53 16 22 H -0.27 -5.89 7.11 56.52 0.40 -5.49 16 23 C 0.46 8.23 7.29 36.01 0.26 8.50 16 24 O -0.46 -10.60 16.25 -25.46 -0.41 -11.01 16 25 O -0.36 -5.14 10.19 -39.25 -0.40 -5.54 16 26 C 0.06 0.72 6.19 37.16 0.23 0.95 16 27 C -0.15 -1.19 10.29 37.16 0.38 -0.81 16 28 H 0.05 0.58 8.14 -51.93 -0.42 0.16 16 29 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 30 H 0.05 0.50 8.14 -51.93 -0.42 0.07 16 31 H 0.06 0.75 6.81 -51.93 -0.35 0.40 16 32 H 0.08 1.26 6.27 -51.93 -0.33 0.93 16 33 H 0.08 1.33 8.14 -51.93 -0.42 0.91 16 34 H 0.08 0.97 8.12 -51.93 -0.42 0.55 16 35 H 0.12 1.67 4.54 -52.49 -0.24 1.43 16 36 H 0.11 1.34 8.06 -52.48 -0.42 0.92 16 37 H 0.12 1.52 8.06 -52.48 -0.42 1.10 16 38 H 0.14 2.62 6.20 -52.49 -0.33 2.29 16 39 H 0.27 7.31 8.29 -40.82 -0.34 6.97 16 40 H 0.07 0.86 8.13 -51.93 -0.42 0.44 16 41 H 0.07 0.85 8.13 -51.93 -0.42 0.42 16 42 H 0.08 0.49 8.14 -51.93 -0.42 0.06 16 43 H 0.07 0.50 8.14 -51.93 -0.42 0.08 16 44 H 0.07 0.50 8.14 -51.93 -0.42 0.08 16 LS Contribution 365.95 15.07 5.51 5.51 Total: -1.00 -36.95 365.95 -8.32 -45.27 By element: Atomic # 1 Polarization: 9.75 SS G_CDS: -6.04 Total: 3.70 kcal Atomic # 6 Polarization: -6.32 SS G_CDS: -2.02 Total: -8.34 kcal Atomic # 7 Polarization: -22.04 SS G_CDS: 0.65 Total: -21.38 kcal Atomic # 8 Polarization: -38.16 SS G_CDS: -1.40 Total: -39.56 kcal Atomic # 14 Polarization: 19.82 SS G_CDS: -5.03 Total: 14.80 kcal Total LS contribution 5.51 Total: 5.51 kcal Total: -36.95 -8.32 -45.27 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001233523423.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -94.502 kcal (2) G-P(sol) polarization free energy of solvation -36.950 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -131.451 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.317 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.267 kcal (6) G-S(sol) free energy of system = (1) + (5) -139.769 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds