Wall clock time and date at job start Tue Mar 31 2020 12:45:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52991 * 109.47266 * 2 1 4 4 C 1.52995 * 109.47340 * 179.97438 * 3 2 1 5 5 H 1.09006 * 109.47423 * 55.00017 * 4 3 2 6 6 O 1.42904 * 109.47342 * 294.99857 * 4 3 2 7 7 C 1.35633 * 116.99660 * 94.11757 * 6 4 3 8 8 C 1.38668 * 120.16174 * 2.32403 * 7 6 4 9 9 C 1.38101 * 120.08630 * 179.74549 * 8 7 6 10 10 C 1.38683 * 120.41845 * 0.55255 * 9 8 7 11 11 C 1.37701 * 120.32312 * 359.70568 * 10 9 8 12 12 C 1.39845 * 119.89887 * 0.02562 * 11 10 9 13 13 C 1.47531 * 120.20265 * 180.02562 * 12 11 10 14 14 O 1.21817 * 120.00145 * 179.97438 * 13 12 11 15 15 C 1.41829 * 120.00470 * 359.97438 * 13 12 11 16 16 H 1.08006 * 119.99384 * 0.02562 * 15 13 12 17 17 C 1.40316 * 120.00598 * 179.97438 * 15 13 12 18 18 N 1.30543 * 119.99777 * 0.02562 * 17 15 13 19 19 Si 1.86803 * 120.00423 * 180.02562 * 17 15 13 20 20 H 1.48497 * 109.46647 * 0.02562 * 19 17 15 21 21 H 1.48497 * 109.46973 * 119.99960 * 19 17 15 22 22 H 1.48495 * 109.47281 * 240.00028 * 19 17 15 23 23 C 1.50700 * 109.47420 * 174.99922 * 4 3 2 24 24 O 1.20822 * 120.00166 * 114.99821 * 23 4 3 25 25 O 1.34228 * 119.99992 * 294.99781 * 23 4 3 26 26 C 1.45206 * 116.99979 * 179.97438 * 25 23 4 27 27 C 1.53005 * 109.46680 * 180.02562 * 26 25 23 28 28 H 1.09004 * 109.46767 * 180.02562 * 1 2 3 29 29 H 1.08998 * 109.47156 * 300.00269 * 1 2 3 30 30 H 1.09000 * 109.46802 * 60.00479 * 1 2 3 31 31 H 1.08998 * 109.47156 * 239.99731 * 2 1 3 32 32 H 1.09004 * 109.46611 * 119.99994 * 2 1 3 33 33 H 1.08998 * 109.47252 * 59.99790 * 3 2 1 34 34 H 1.09004 * 109.47300 * 299.99572 * 3 2 1 35 35 H 1.07996 * 119.95846 * 0.02562 * 8 7 6 36 36 H 1.08005 * 119.78721 * 180.25899 * 9 8 7 37 37 H 1.08004 * 119.83694 * 179.71933 * 10 9 8 38 38 H 1.08000 * 120.05129 * 179.97438 * 11 10 9 39 39 H 0.97008 * 120.00151 * 180.02562 * 18 17 15 40 40 H 1.09001 * 109.47240 * 300.00274 * 26 25 23 41 41 H 1.08999 * 109.47025 * 60.00513 * 26 25 23 42 42 H 1.09005 * 109.46787 * 179.97438 * 27 26 25 43 43 H 1.09001 * 109.47239 * 299.99945 * 27 26 25 44 44 H 1.08999 * 109.47242 * 60.00316 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 6 3.5700 1.4424 0.0006 5 1 3.9338 0.8528 -0.8410 6 8 4.0459 0.8733 1.2220 7 6 4.3330 -0.4523 1.2128 8 6 4.2076 -1.1842 0.0417 9 6 4.5054 -2.5327 0.0328 10 6 4.9202 -3.1678 1.1938 11 6 5.0454 -2.4587 2.3675 12 6 4.7528 -1.0914 2.3904 13 6 4.8852 -0.3249 3.6440 14 8 4.6298 0.8661 3.6597 15 6 5.3100 -0.9747 4.8310 16 1 5.5368 -2.0305 4.8170 17 6 5.4364 -0.2456 6.0233 18 7 5.1627 1.0307 6.0400 19 14 5.9965 -1.1013 7.5865 20 1 6.2422 -2.5382 7.3033 21 1 7.2503 -0.4718 8.0733 22 1 4.9430 -0.9740 8.6252 23 6 4.0724 2.8578 -0.1232 24 8 4.6903 3.3612 0.7849 25 8 3.8335 3.5593 -1.2424 26 6 4.3467 4.9167 -1.2918 27 6 3.9784 5.5526 -2.6338 28 1 -0.3633 -1.0277 0.0005 29 1 -0.3633 0.5139 0.8899 30 1 -0.3633 0.5138 -0.8900 31 1 1.8934 -0.5139 -0.8899 32 1 1.8933 -0.5139 0.8900 33 1 1.6767 1.9563 0.8899 34 1 1.6768 1.9563 -0.8900 35 1 3.8811 -0.6981 -0.8657 36 1 4.4101 -3.0972 -0.8830 37 1 5.1462 -4.2238 1.1773 38 1 5.3684 -2.9578 3.2691 39 1 5.2505 1.5348 6.8641 40 1 3.9096 5.5001 -0.4814 41 1 5.4311 4.8993 -1.1830 42 1 4.3633 6.5718 -2.6707 43 1 4.4153 4.9692 -3.4443 44 1 2.8940 5.5700 -2.7422 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001233523423.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:45:23 Heat of formation + Delta-G solvation = -162.684923 kcal Electronic energy + Delta-G solvation = -27632.845759 eV Core-core repulsion = 23708.008256 eV Total energy + Delta-G solvation = -3924.837503 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 320.150 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -42.10475 -41.01190 -38.94479 -37.93120 -37.62504 -35.81075 -34.70362 -32.87745 -32.18558 -31.49569 -30.20331 -28.67021 -26.35939 -24.65046 -24.32898 -23.34730 -22.38088 -21.68963 -21.40520 -19.43734 -18.65115 -18.44506 -17.84415 -17.77507 -17.26475 -16.68245 -16.43018 -16.07113 -15.59349 -15.21965 -15.12778 -14.97624 -14.84398 -14.43358 -14.38324 -13.93034 -13.75639 -13.65213 -13.33338 -13.25555 -13.00350 -12.93028 -12.85162 -12.74198 -12.63238 -12.56772 -12.28735 -12.07773 -12.06400 -11.93532 -11.80815 -11.63723 -11.42756 -11.26518 -10.99067 -9.70027 -9.44665 -8.98718 -8.26226 -7.00643 0.28278 0.58584 0.93623 1.12133 1.35091 1.36242 1.54500 2.21145 2.30762 2.49558 2.92380 3.39237 3.49618 3.60960 3.82715 3.93258 3.97517 4.03143 4.05150 4.10485 4.14564 4.28742 4.35006 4.51672 4.57016 4.58789 4.70840 4.75005 4.79321 4.85772 4.89928 4.92873 5.05758 5.16126 5.18970 5.23714 5.29287 5.31845 5.38883 5.40880 5.55954 5.72870 5.95794 6.06010 6.48015 6.63608 6.75010 6.90766 8.36158 8.58513 Molecular weight = 320.15amu Principal moments of inertia in cm(-1) A = 0.011573 B = 0.004294 C = 0.003595 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2418.839489 B = 6518.758562 C = 7787.628630 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.123 4.123 3 C -0.123 4.123 4 C 0.078 3.922 5 H 0.142 0.858 6 O -0.289 6.289 7 C 0.132 3.868 8 C -0.220 4.220 9 C -0.066 4.066 10 C -0.164 4.164 11 C -0.063 4.063 12 C -0.192 4.192 13 C 0.361 3.639 14 O -0.571 6.571 15 C -0.552 4.552 16 H 0.094 0.906 17 C 0.020 3.980 18 N -0.796 5.796 19 Si 0.996 3.004 20 H -0.240 1.240 21 H -0.267 1.267 22 H -0.265 1.265 23 C 0.460 3.540 24 O -0.526 6.526 25 O -0.343 6.343 26 C 0.048 3.952 27 C -0.139 4.139 28 H 0.066 0.934 29 H 0.038 0.962 30 H 0.078 0.922 31 H 0.095 0.905 32 H 0.035 0.965 33 H 0.049 0.951 34 H 0.123 0.877 35 H 0.159 0.841 36 H 0.171 0.829 37 H 0.158 0.842 38 H 0.131 0.869 39 H 0.277 0.723 40 H 0.061 0.939 41 H 0.063 0.937 42 H 0.101 0.899 43 H 0.076 0.924 44 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.683 -3.289 -19.464 20.541 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.160 4.160 3 C -0.160 4.160 4 C 0.021 3.979 5 H 0.159 0.841 6 O -0.202 6.202 7 C 0.086 3.914 8 C -0.238 4.238 9 C -0.084 4.084 10 C -0.182 4.182 11 C -0.081 4.081 12 C -0.193 4.193 13 C 0.259 3.741 14 O -0.463 6.463 15 C -0.583 4.583 16 H 0.112 0.888 17 C -0.198 4.198 18 N -0.426 5.426 19 Si 0.814 3.186 20 H -0.162 1.162 21 H -0.192 1.192 22 H -0.190 1.190 23 C 0.302 3.698 24 O -0.414 6.414 25 O -0.260 6.260 26 C -0.025 4.025 27 C -0.196 4.196 28 H 0.085 0.915 29 H 0.057 0.943 30 H 0.097 0.903 31 H 0.114 0.886 32 H 0.054 0.946 33 H 0.068 0.932 34 H 0.141 0.859 35 H 0.176 0.824 36 H 0.188 0.812 37 H 0.175 0.825 38 H 0.149 0.851 39 H 0.088 0.912 40 H 0.080 0.920 41 H 0.081 0.919 42 H 0.119 0.881 43 H 0.095 0.905 44 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges -5.631 -2.208 -19.010 19.949 hybrid contribution 0.560 0.459 1.438 1.610 sum -5.071 -1.749 -17.572 18.373 Atomic orbital electron populations 1.21721 0.93869 1.02551 1.02114 1.21669 0.97618 0.94289 1.02456 1.22080 0.89353 1.00406 1.04190 1.22193 0.97329 0.88428 0.89970 0.84107 1.86547 1.79386 1.21547 1.32695 1.19603 0.94781 0.82315 0.94713 1.21464 1.09490 0.96606 0.96286 1.21448 0.94759 0.92896 0.99275 1.21398 1.03409 1.01374 0.91985 1.21466 0.95751 0.91206 0.99718 1.21210 1.06516 0.96357 0.95245 1.18848 0.79580 0.87916 0.87771 1.90547 1.50106 1.18222 1.87444 1.21457 1.43445 0.98155 0.95204 0.88849 1.27311 0.92649 0.94961 1.04851 1.70188 1.33497 1.09849 1.29038 0.85010 0.78386 0.79888 0.75296 1.16229 1.19223 1.18994 1.23762 0.76590 0.89277 0.80163 1.90780 1.38270 1.71189 1.41136 1.86446 1.72500 1.28885 1.38160 1.23414 0.99210 0.78169 1.01749 1.21814 1.03684 1.01171 0.92897 0.91516 0.94304 0.90340 0.88612 0.94589 0.93246 0.85913 0.82405 0.81202 0.82452 0.85089 0.91245 0.92014 0.91855 0.88091 0.90547 0.90610 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.00 9.91 71.98 0.71 -2.29 16 2 C -0.12 -3.09 4.47 30.59 0.14 -2.95 16 3 C -0.12 -3.47 4.90 30.59 0.15 -3.32 16 4 C 0.08 2.71 2.68 29.85 0.08 2.79 16 5 H 0.14 3.69 5.38 -2.38 -0.01 3.68 16 6 O -0.29 -14.16 7.29 -60.55 -0.44 -14.60 16 7 C 0.13 5.84 5.35 22.90 0.12 5.97 16 8 C -0.22 -6.72 7.15 22.34 0.16 -6.56 16 9 C -0.07 -1.66 10.04 22.34 0.22 -1.44 16 10 C -0.16 -4.73 10.02 22.25 0.22 -4.51 16 11 C -0.06 -2.53 9.43 22.53 0.21 -2.32 16 12 C -0.19 -9.75 5.90 -19.91 -0.12 -9.87 16 13 C 0.36 23.06 6.91 25.61 0.18 23.24 16 14 O -0.57 -41.95 13.71 16.15 0.22 -41.73 16 15 C -0.55 -33.01 8.86 23.66 0.21 -32.80 16 16 H 0.09 4.93 6.02 -2.91 -0.02 4.91 16 17 C 0.02 1.14 5.50 85.39 0.47 1.61 16 18 N -0.80 -51.29 11.73 21.88 0.26 -51.03 16 19 Si 1.00 42.10 29.56 68.60 2.03 44.13 16 20 H -0.24 -9.20 7.11 99.48 0.71 -8.49 16 21 H -0.27 -10.90 7.11 99.48 0.71 -10.19 16 22 H -0.27 -10.72 7.11 99.48 0.71 -10.01 16 23 C 0.46 17.39 7.29 71.24 0.52 17.91 16 24 O -0.53 -26.31 16.25 28.39 0.46 -25.85 16 25 O -0.34 -9.66 10.19 -51.39 -0.52 -10.18 16 26 C 0.05 1.14 6.19 71.98 0.45 1.59 16 27 C -0.14 -1.92 10.29 71.98 0.74 -1.18 16 28 H 0.07 1.24 8.14 -2.39 -0.02 1.22 16 29 H 0.04 0.92 8.14 -2.39 -0.02 0.90 16 30 H 0.08 1.22 8.14 -2.39 -0.02 1.20 16 31 H 0.10 1.79 6.81 -2.39 -0.02 1.77 16 32 H 0.04 1.20 6.27 -2.38 -0.01 1.19 16 33 H 0.05 1.71 8.14 -2.39 -0.02 1.69 16 34 H 0.12 2.48 8.12 -2.38 -0.02 2.46 16 35 H 0.16 3.55 4.54 -2.91 -0.01 3.54 16 36 H 0.17 2.54 8.06 -2.91 -0.02 2.52 16 37 H 0.16 3.24 8.06 -2.91 -0.02 3.22 16 38 H 0.13 5.14 6.20 -2.91 -0.02 5.12 16 39 H 0.28 16.04 8.29 -92.70 -0.77 15.27 16 40 H 0.06 1.58 8.13 -2.39 -0.02 1.56 16 41 H 0.06 1.59 8.13 -2.39 -0.02 1.57 16 42 H 0.10 1.00 8.14 -2.38 -0.02 0.98 16 43 H 0.08 0.94 8.14 -2.39 -0.02 0.92 16 44 H 0.07 0.94 8.14 -2.39 -0.02 0.92 16 Total: -1.00 -94.95 365.95 7.49 -87.46 By element: Atomic # 1 Polarization: 24.92 SS G_CDS: 1.02 Total: 25.94 kcal Atomic # 6 Polarization: -18.60 SS G_CDS: 4.47 Total: -14.13 kcal Atomic # 7 Polarization: -51.29 SS G_CDS: 0.26 Total: -51.03 kcal Atomic # 8 Polarization: -92.09 SS G_CDS: -0.28 Total: -92.37 kcal Atomic # 14 Polarization: 42.10 SS G_CDS: 2.03 Total: 44.13 kcal Total: -94.95 7.49 -87.46 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001233523423.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -75.226 kcal (2) G-P(sol) polarization free energy of solvation -94.947 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -170.173 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.488 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -87.459 kcal (6) G-S(sol) free energy of system = (1) + (5) -162.685 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds