Wall clock time and date at job start Tue Mar 31 2020 12:56:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52993 * 109.47527 * 2 1 4 4 C 1.53000 * 109.47330 * 179.97438 * 3 2 1 5 5 O 1.45201 * 109.47239 * 179.97438 * 4 3 2 6 6 C 1.34228 * 117.00064 * 180.02562 * 5 4 3 7 7 O 1.20834 * 119.99712 * 359.97438 * 6 5 4 8 8 C 1.50697 * 120.00160 * 180.02562 * 6 5 4 9 9 H 1.08996 * 109.47638 * 59.99946 * 8 6 5 10 10 C 1.53002 * 109.47043 * 299.99462 * 8 6 5 11 11 O 1.42906 * 109.47066 * 179.97438 * 8 6 5 12 12 C 1.35660 * 117.00037 * 204.62382 * 11 8 6 13 13 C 1.39166 * 119.90290 * 354.89025 * 12 11 8 14 14 C 1.37597 * 120.09302 * 180.25007 * 13 12 11 15 15 C 1.39950 * 119.90220 * 359.49774 * 14 13 12 16 16 C 1.47569 * 120.09219 * 180.26959 * 15 14 13 17 17 O 1.21822 * 120.00053 * 0.02562 * 16 15 14 18 18 C 1.41765 * 120.00102 * 179.97438 * 16 15 14 19 19 H 1.08004 * 120.00056 * 0.02562 * 18 16 15 20 20 C 1.40340 * 120.00114 * 180.02562 * 18 16 15 21 21 N 1.30531 * 120.00051 * 359.97438 * 20 18 16 22 22 Si 1.86800 * 120.00145 * 180.02562 * 20 18 16 23 23 H 1.48503 * 109.47067 * 59.99654 * 22 20 18 24 24 H 1.48494 * 109.47252 * 179.97438 * 22 20 18 25 25 H 1.48500 * 109.47096 * 299.99889 * 22 20 18 26 26 C 1.39946 * 119.81409 * 0.25425 * 15 14 13 27 27 C 1.37597 * 119.90672 * 359.97438 * 26 15 14 28 28 H 1.09001 * 109.46871 * 59.99365 * 1 2 3 29 29 H 1.08990 * 109.47803 * 179.97438 * 1 2 3 30 30 H 1.08999 * 109.47043 * 300.00333 * 1 2 3 31 31 H 1.08999 * 109.47043 * 239.99667 * 2 1 3 32 32 H 1.09000 * 109.46619 * 120.00157 * 2 1 3 33 33 H 1.08999 * 109.47231 * 59.99782 * 3 2 1 34 34 H 1.09000 * 109.47299 * 299.99741 * 3 2 1 35 35 H 1.09004 * 109.46836 * 60.00385 * 4 3 2 36 36 H 1.09000 * 109.46992 * 300.00264 * 4 3 2 37 37 H 1.09002 * 109.46627 * 60.00035 * 10 8 6 38 38 H 1.09001 * 109.47252 * 180.02562 * 10 8 6 39 39 H 1.09002 * 109.46874 * 300.00155 * 10 8 6 40 40 H 1.08002 * 119.95679 * 0.02562 * 13 12 11 41 41 H 1.08003 * 120.04951 * 179.77238 * 14 13 12 42 42 H 0.97002 * 119.99861 * 180.02562 * 21 20 18 43 43 H 1.08001 * 120.04909 * 180.02562 * 26 15 14 44 44 H 1.07999 * 119.95349 * 180.02562 * 27 26 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 6 3.5701 1.4423 0.0006 5 8 4.0542 2.8113 0.0000 6 6 5.3849 2.9871 0.0000 7 8 6.1209 2.0288 0.0009 8 6 5.9610 4.3796 -0.0001 9 1 5.6252 4.9118 0.8898 10 6 5.4895 5.1265 -1.2494 11 8 7.3881 4.3047 0.0004 12 6 8.0605 5.3698 0.5041 13 6 7.3636 6.5106 0.8909 14 6 8.0422 7.5951 1.3974 15 6 9.4342 7.5458 1.5333 16 6 10.1656 8.7042 2.0816 17 8 9.5577 9.7052 2.4172 18 6 11.5757 8.6520 2.2189 19 1 12.1146 7.7644 1.9218 20 6 12.2712 9.7535 2.7408 21 7 11.6199 10.8263 3.0995 22 14 14.1292 9.6849 2.9211 23 1 14.7481 9.4684 1.5886 24 1 14.6188 10.9655 3.4915 25 1 14.4978 8.5664 3.8257 26 6 10.1306 6.3946 1.1479 27 6 9.4446 5.3164 0.6379 28 1 -0.3633 0.5139 -0.8900 29 1 -0.3634 -1.0275 -0.0005 30 1 -0.3633 0.5139 0.8899 31 1 1.8933 -0.5139 -0.8899 32 1 1.8933 -0.5139 0.8900 33 1 1.6768 1.9563 0.8899 34 1 1.6769 1.9563 -0.8900 35 1 3.9337 0.9284 -0.8892 36 1 3.9330 0.9286 0.8908 37 1 4.4010 5.1836 -1.2493 38 1 5.9065 6.1336 -1.2497 39 1 5.8254 4.5943 -2.1393 40 1 6.2889 6.5462 0.7899 41 1 7.5010 8.4815 1.6939 42 1 12.1007 11.5878 3.4599 43 1 11.2048 6.3523 1.2515 44 1 9.9812 4.4275 0.3407 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001233524996.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:56:54 Heat of formation + Delta-G solvation = -154.093240 kcal Electronic energy + Delta-G solvation = -25512.811712 eV Core-core repulsion = 21588.346772 eV Total energy + Delta-G solvation = -3924.464940 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 320.150 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -40.99896 -39.74128 -37.76367 -36.96206 -35.73178 -35.42964 -32.74506 -32.40841 -30.54270 -29.93060 -29.36153 -26.70636 -25.51321 -24.02775 -22.61495 -22.36968 -21.67212 -20.69751 -19.64371 -18.39782 -17.49679 -17.22590 -16.98666 -16.43014 -15.80641 -15.56456 -15.11649 -15.04556 -14.46938 -14.25302 -13.97006 -13.76898 -13.72659 -13.31878 -13.01633 -12.85312 -12.60526 -12.54143 -12.40967 -12.29309 -12.01745 -11.79378 -11.75309 -11.66058 -11.57237 -11.26881 -11.23087 -11.10888 -10.83805 -10.72110 -10.56131 -10.38497 -10.36503 -9.97934 -8.98800 -8.48333 -7.56098 -7.51289 -6.32867 -4.93246 1.72971 1.88974 1.93980 1.98705 3.06185 3.11781 3.13737 3.43840 3.97627 3.99212 4.12966 4.37068 4.43978 4.54099 4.58456 4.63236 4.68343 4.76897 4.95855 5.00645 5.19947 5.27798 5.28181 5.29729 5.36671 5.39061 5.45751 5.58303 5.69693 5.77818 5.78476 5.83836 5.84302 5.98197 6.08341 6.09044 6.22585 6.58081 6.76798 6.98650 7.19270 7.23507 7.32534 7.48069 7.72232 8.00564 8.76615 8.81162 10.28567 10.50408 Molecular weight = 320.15amu Principal moments of inertia in cm(-1) A = 0.036808 B = 0.001946 C = 0.001900 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 760.529995 B =14383.574225 C =14732.428295 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.123 4.123 3 C -0.120 4.120 4 C 0.066 3.934 5 O -0.353 6.353 6 C 0.467 3.533 7 O -0.484 6.484 8 C 0.096 3.904 9 H 0.112 0.888 10 C -0.174 4.174 11 O -0.293 6.293 12 C 0.108 3.892 13 C -0.221 4.221 14 C -0.055 4.055 15 C -0.132 4.132 16 C 0.388 3.612 17 O -0.544 6.544 18 C -0.517 4.517 19 H 0.074 0.926 20 C 0.080 3.920 21 N -0.735 5.735 22 Si 0.907 3.093 23 H -0.264 1.264 24 H -0.278 1.278 25 H -0.264 1.264 26 C -0.056 4.056 27 C -0.157 4.157 28 H 0.056 0.944 29 H 0.057 0.943 30 H 0.056 0.944 31 H 0.066 0.934 32 H 0.066 0.934 33 H 0.076 0.924 34 H 0.075 0.925 35 H 0.071 0.929 36 H 0.072 0.928 37 H 0.084 0.916 38 H 0.085 0.915 39 H 0.072 0.928 40 H 0.122 0.878 41 H 0.129 0.871 42 H 0.275 0.725 43 H 0.138 0.862 44 H 0.125 0.875 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.023 -16.986 -7.053 25.061 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.160 4.160 3 C -0.158 4.158 4 C -0.008 4.008 5 O -0.271 6.271 6 C 0.308 3.692 7 O -0.370 6.370 8 C 0.038 3.962 9 H 0.130 0.870 10 C -0.231 4.231 11 O -0.208 6.208 12 C 0.064 3.936 13 C -0.239 4.239 14 C -0.074 4.074 15 C -0.134 4.134 16 C 0.284 3.716 17 O -0.434 6.434 18 C -0.548 4.548 19 H 0.092 0.908 20 C -0.144 4.144 21 N -0.363 5.363 22 Si 0.731 3.269 23 H -0.189 1.189 24 H -0.203 1.203 25 H -0.189 1.189 26 C -0.074 4.074 27 C -0.175 4.175 28 H 0.075 0.925 29 H 0.076 0.924 30 H 0.075 0.925 31 H 0.084 0.916 32 H 0.085 0.915 33 H 0.094 0.906 34 H 0.094 0.906 35 H 0.090 0.910 36 H 0.090 0.910 37 H 0.103 0.897 38 H 0.103 0.897 39 H 0.091 0.909 40 H 0.140 0.860 41 H 0.147 0.853 42 H 0.086 0.914 43 H 0.156 0.844 44 H 0.143 0.857 Dipole moment (debyes) X Y Z Total from point charges -17.083 -16.848 -6.912 24.969 hybrid contribution 0.846 -0.251 0.101 0.888 sum -16.237 -17.099 -6.811 24.544 Atomic orbital electron populations 1.21746 0.95024 1.01958 1.02165 1.21440 0.96509 0.95451 1.02633 1.21625 0.92109 0.98024 1.04005 1.23164 0.94969 0.79709 1.02926 1.86440 1.23590 1.32760 1.84274 1.23196 0.80940 0.91812 0.73219 1.90705 1.60288 1.42562 1.43402 1.21544 0.81831 0.90347 1.02498 0.87011 1.22334 1.02765 1.01777 0.96267 1.86034 1.16290 1.40151 1.78294 1.19100 0.91841 0.85988 0.96700 1.21117 0.99452 0.94715 1.08625 1.21189 0.94333 0.97033 0.94811 1.21872 0.93906 0.98101 0.99486 1.18056 0.88988 0.84532 0.79996 1.90503 1.70646 1.32778 1.49475 1.20919 0.93847 1.00929 1.39114 0.90759 1.26004 1.00457 0.94651 0.93272 1.69949 1.37389 1.02780 1.26190 0.86426 0.82420 0.78483 0.79616 1.18862 1.20266 1.18866 1.21420 1.00444 0.91193 0.94389 1.20365 0.90566 1.00516 1.06099 0.92497 0.92416 0.92460 0.91567 0.91537 0.90557 0.90587 0.91017 0.90989 0.89701 0.89658 0.90917 0.86031 0.85281 0.91414 0.84409 0.85740 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.66 9.91 37.16 0.37 -0.29 16 2 C -0.12 -0.60 5.93 -26.73 -0.16 -0.76 16 3 C -0.12 -0.72 5.59 -26.73 -0.15 -0.87 16 4 C 0.07 0.55 5.47 37.16 0.20 0.75 16 5 O -0.35 -3.69 10.12 -39.25 -0.40 -4.09 16 6 C 0.47 6.02 7.33 36.00 0.26 6.28 16 7 O -0.48 -7.79 16.25 -25.48 -0.41 -8.20 16 8 C 0.10 1.19 2.75 -27.88 -0.08 1.11 16 9 H 0.11 1.23 6.30 -51.93 -0.33 0.90 16 10 C -0.17 -1.72 9.09 37.16 0.34 -1.38 16 11 O -0.29 -4.69 9.32 -38.63 -0.36 -5.05 16 12 C 0.11 1.85 6.61 -38.90 -0.26 1.60 16 13 C -0.22 -3.72 8.20 -39.47 -0.32 -4.04 16 14 C -0.06 -1.14 9.59 -39.17 -0.38 -1.51 16 15 C -0.13 -3.06 5.89 -104.81 -0.62 -3.68 16 16 C 0.39 10.87 6.91 -34.43 -0.24 10.63 16 17 O -0.54 -17.11 14.89 5.08 0.08 -17.03 16 18 C -0.52 -14.03 8.86 -37.45 -0.33 -14.36 16 19 H 0.07 1.81 6.01 -52.48 -0.32 1.49 16 20 C 0.08 2.12 5.50 -17.31 -0.10 2.02 16 21 N -0.73 -20.93 11.73 55.57 0.65 -20.28 16 22 Si 0.91 19.06 29.56 -169.99 -5.03 14.03 16 23 H -0.26 -5.41 7.11 56.52 0.40 -5.00 16 24 H -0.28 -5.69 7.11 56.52 0.40 -5.28 16 25 H -0.26 -5.41 7.11 56.52 0.40 -5.01 16 26 C -0.06 -1.13 9.43 -39.18 -0.37 -1.50 16 27 C -0.16 -2.80 9.97 -39.47 -0.39 -3.20 16 28 H 0.06 0.24 8.14 -51.93 -0.42 -0.19 16 29 H 0.06 0.22 8.14 -51.93 -0.42 -0.20 16 30 H 0.06 0.24 8.14 -51.93 -0.42 -0.18 16 31 H 0.07 0.31 8.14 -51.93 -0.42 -0.11 16 32 H 0.07 0.32 8.14 -51.93 -0.42 -0.10 16 33 H 0.08 0.45 8.14 -51.93 -0.42 0.03 16 34 H 0.08 0.43 8.14 -51.93 -0.42 0.01 16 35 H 0.07 0.59 8.13 -51.93 -0.42 0.17 16 36 H 0.07 0.61 8.13 -51.93 -0.42 0.19 16 37 H 0.08 0.65 8.11 -51.93 -0.42 0.23 16 38 H 0.08 0.87 6.89 -51.93 -0.36 0.52 16 39 H 0.07 0.72 8.14 -51.93 -0.42 0.30 16 40 H 0.12 1.63 5.40 -52.49 -0.28 1.34 16 41 H 0.13 2.69 7.65 -52.48 -0.40 2.29 16 42 H 0.27 7.03 8.29 -40.82 -0.34 6.69 16 43 H 0.14 2.62 6.19 -52.49 -0.33 2.30 16 44 H 0.12 1.97 8.06 -52.49 -0.42 1.55 16 LS Contribution 374.54 15.07 5.64 5.64 Total: -1.00 -33.99 374.54 -8.25 -42.24 By element: Atomic # 1 Polarization: 8.14 SS G_CDS: -6.22 Total: 1.92 kcal Atomic # 6 Polarization: -6.98 SS G_CDS: -2.21 Total: -9.19 kcal Atomic # 7 Polarization: -20.93 SS G_CDS: 0.65 Total: -20.28 kcal Atomic # 8 Polarization: -33.27 SS G_CDS: -1.10 Total: -34.37 kcal Atomic # 14 Polarization: 19.06 SS G_CDS: -5.03 Total: 14.03 kcal Total LS contribution 5.64 Total: 5.64 kcal Total: -33.99 -8.25 -42.24 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001233524996.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -111.849 kcal (2) G-P(sol) polarization free energy of solvation -33.991 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -145.840 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.253 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.244 kcal (6) G-S(sol) free energy of system = (1) + (5) -154.093 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds