Wall clock time and date at job start Tue Mar 31 2020 12:56:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52993 * 109.47527 * 2 1 4 4 C 1.53000 * 109.47330 * 179.97438 * 3 2 1 5 5 O 1.45201 * 109.47239 * 179.97438 * 4 3 2 6 6 C 1.34228 * 117.00064 * 180.02562 * 5 4 3 7 7 O 1.20834 * 119.99712 * 359.97438 * 6 5 4 8 8 C 1.50697 * 120.00160 * 180.02562 * 6 5 4 9 9 H 1.08996 * 109.47638 * 59.99946 * 8 6 5 10 10 C 1.53002 * 109.47043 * 299.99462 * 8 6 5 11 11 O 1.42906 * 109.47066 * 179.97438 * 8 6 5 12 12 C 1.35660 * 117.00037 * 204.62382 * 11 8 6 13 13 C 1.39166 * 119.90290 * 354.89025 * 12 11 8 14 14 C 1.37597 * 120.09302 * 180.25007 * 13 12 11 15 15 C 1.39950 * 119.90220 * 359.49774 * 14 13 12 16 16 C 1.47569 * 120.09219 * 180.26959 * 15 14 13 17 17 O 1.21822 * 120.00053 * 0.02562 * 16 15 14 18 18 C 1.41765 * 120.00102 * 179.97438 * 16 15 14 19 19 H 1.08004 * 120.00056 * 0.02562 * 18 16 15 20 20 C 1.40340 * 120.00114 * 180.02562 * 18 16 15 21 21 N 1.30531 * 120.00051 * 359.97438 * 20 18 16 22 22 Si 1.86800 * 120.00145 * 180.02562 * 20 18 16 23 23 H 1.48503 * 109.47067 * 59.99654 * 22 20 18 24 24 H 1.48494 * 109.47252 * 179.97438 * 22 20 18 25 25 H 1.48500 * 109.47096 * 299.99889 * 22 20 18 26 26 C 1.39946 * 119.81409 * 0.25425 * 15 14 13 27 27 C 1.37597 * 119.90672 * 359.97438 * 26 15 14 28 28 H 1.09001 * 109.46871 * 59.99365 * 1 2 3 29 29 H 1.08990 * 109.47803 * 179.97438 * 1 2 3 30 30 H 1.08999 * 109.47043 * 300.00333 * 1 2 3 31 31 H 1.08999 * 109.47043 * 239.99667 * 2 1 3 32 32 H 1.09000 * 109.46619 * 120.00157 * 2 1 3 33 33 H 1.08999 * 109.47231 * 59.99782 * 3 2 1 34 34 H 1.09000 * 109.47299 * 299.99741 * 3 2 1 35 35 H 1.09004 * 109.46836 * 60.00385 * 4 3 2 36 36 H 1.09000 * 109.46992 * 300.00264 * 4 3 2 37 37 H 1.09002 * 109.46627 * 60.00035 * 10 8 6 38 38 H 1.09001 * 109.47252 * 180.02562 * 10 8 6 39 39 H 1.09002 * 109.46874 * 300.00155 * 10 8 6 40 40 H 1.08002 * 119.95679 * 0.02562 * 13 12 11 41 41 H 1.08003 * 120.04951 * 179.77238 * 14 13 12 42 42 H 0.97002 * 119.99861 * 180.02562 * 21 20 18 43 43 H 1.08001 * 120.04909 * 180.02562 * 26 15 14 44 44 H 1.07999 * 119.95349 * 180.02562 * 27 26 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 6 3.5701 1.4423 0.0006 5 8 4.0542 2.8113 0.0000 6 6 5.3849 2.9871 0.0000 7 8 6.1209 2.0288 0.0009 8 6 5.9610 4.3796 -0.0001 9 1 5.6252 4.9118 0.8898 10 6 5.4895 5.1265 -1.2494 11 8 7.3881 4.3047 0.0004 12 6 8.0605 5.3698 0.5041 13 6 7.3636 6.5106 0.8909 14 6 8.0422 7.5951 1.3974 15 6 9.4342 7.5458 1.5333 16 6 10.1656 8.7042 2.0816 17 8 9.5577 9.7052 2.4172 18 6 11.5757 8.6520 2.2189 19 1 12.1146 7.7644 1.9218 20 6 12.2712 9.7535 2.7408 21 7 11.6199 10.8263 3.0995 22 14 14.1292 9.6849 2.9211 23 1 14.7481 9.4684 1.5886 24 1 14.6188 10.9655 3.4915 25 1 14.4978 8.5664 3.8257 26 6 10.1306 6.3946 1.1479 27 6 9.4446 5.3164 0.6379 28 1 -0.3633 0.5139 -0.8900 29 1 -0.3634 -1.0275 -0.0005 30 1 -0.3633 0.5139 0.8899 31 1 1.8933 -0.5139 -0.8899 32 1 1.8933 -0.5139 0.8900 33 1 1.6768 1.9563 0.8899 34 1 1.6769 1.9563 -0.8900 35 1 3.9337 0.9284 -0.8892 36 1 3.9330 0.9286 0.8908 37 1 4.4010 5.1836 -1.2493 38 1 5.9065 6.1336 -1.2497 39 1 5.8254 4.5943 -2.1393 40 1 6.2889 6.5462 0.7899 41 1 7.5010 8.4815 1.6939 42 1 12.1007 11.5878 3.4599 43 1 11.2048 6.3523 1.2515 44 1 9.9812 4.4275 0.3407 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001233524996.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:56:54 Heat of formation + Delta-G solvation = -172.781958 kcal Electronic energy + Delta-G solvation = -25513.622116 eV Core-core repulsion = 21588.346772 eV Total energy + Delta-G solvation = -3925.275343 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 320.150 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -42.05020 -41.00275 -39.36527 -38.02736 -37.44424 -35.98284 -34.78237 -33.46651 -32.05657 -31.03170 -30.40050 -28.63761 -26.39013 -24.90325 -24.11402 -23.65737 -22.20353 -21.78279 -21.37108 -19.57942 -18.78396 -18.44529 -17.99175 -17.82693 -17.41504 -16.61742 -16.35602 -16.00635 -15.96205 -15.46803 -15.17274 -14.79649 -14.61110 -14.51409 -14.35118 -14.26710 -14.15734 -13.61538 -13.50172 -13.22225 -13.12683 -13.02391 -12.89877 -12.85110 -12.68851 -12.43339 -12.26074 -12.07674 -12.01734 -12.00313 -11.80060 -11.65040 -11.44958 -11.40323 -10.96815 -9.96541 -9.61614 -9.12012 -8.33642 -7.06690 0.17279 0.44988 0.90509 0.98576 1.39591 1.41499 1.54467 2.20200 2.22047 2.33824 2.83841 3.31514 3.61861 3.71661 3.75501 3.85581 3.86444 3.88997 3.95610 4.14315 4.26413 4.29663 4.33141 4.39559 4.51859 4.55864 4.62506 4.63950 4.76788 4.84036 4.88440 4.94634 5.08322 5.10609 5.15254 5.19744 5.26629 5.29998 5.30902 5.42044 5.43888 5.71407 5.73950 5.98307 6.29979 6.52642 6.70838 6.80363 8.25512 8.49547 Molecular weight = 320.15amu Principal moments of inertia in cm(-1) A = 0.036808 B = 0.001946 C = 0.001900 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 760.529995 B =14383.574225 C =14732.428295 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.122 4.122 3 C -0.113 4.113 4 C 0.059 3.941 5 O -0.345 6.345 6 C 0.474 3.526 7 O -0.522 6.522 8 C 0.085 3.915 9 H 0.131 0.869 10 C -0.170 4.170 11 O -0.303 6.303 12 C 0.125 3.875 13 C -0.205 4.205 14 C -0.064 4.064 15 C -0.175 4.175 16 C 0.365 3.635 17 O -0.599 6.599 18 C -0.545 4.545 19 H 0.096 0.904 20 C 0.024 3.976 21 N -0.786 5.786 22 Si 0.994 3.006 23 H -0.251 1.251 24 H -0.270 1.270 25 H -0.252 1.252 26 C -0.053 4.053 27 C -0.157 4.157 28 H 0.059 0.941 29 H 0.061 0.939 30 H 0.057 0.943 31 H 0.068 0.932 32 H 0.066 0.934 33 H 0.078 0.922 34 H 0.081 0.919 35 H 0.072 0.928 36 H 0.069 0.931 37 H 0.112 0.888 38 H 0.084 0.916 39 H 0.071 0.929 40 H 0.161 0.839 41 H 0.115 0.885 42 H 0.282 0.718 43 H 0.143 0.857 44 H 0.149 0.851 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.490 -19.003 -8.009 27.040 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.159 4.159 3 C -0.150 4.150 4 C -0.014 4.014 5 O -0.262 6.262 6 C 0.316 3.684 7 O -0.410 6.410 8 C 0.028 3.972 9 H 0.148 0.852 10 C -0.227 4.227 11 O -0.217 6.217 12 C 0.081 3.919 13 C -0.223 4.223 14 C -0.082 4.082 15 C -0.176 4.176 16 C 0.265 3.735 17 O -0.493 6.493 18 C -0.576 4.576 19 H 0.114 0.886 20 C -0.195 4.195 21 N -0.415 5.415 22 Si 0.813 3.187 23 H -0.175 1.175 24 H -0.194 1.194 25 H -0.176 1.176 26 C -0.071 4.071 27 C -0.175 4.175 28 H 0.078 0.922 29 H 0.080 0.920 30 H 0.076 0.924 31 H 0.087 0.913 32 H 0.085 0.915 33 H 0.097 0.903 34 H 0.100 0.900 35 H 0.090 0.910 36 H 0.087 0.913 37 H 0.130 0.870 38 H 0.103 0.897 39 H 0.090 0.910 40 H 0.179 0.821 41 H 0.133 0.867 42 H 0.092 0.908 43 H 0.160 0.840 44 H 0.167 0.833 Dipole moment (debyes) X Y Z Total from point charges -17.585 -18.892 -7.884 26.987 hybrid contribution 0.791 0.224 0.334 0.887 sum -16.795 -18.669 -7.550 26.222 Atomic orbital electron populations 1.21746 0.94448 1.02346 1.02329 1.21446 0.96945 0.94733 1.02825 1.21619 0.90137 0.98840 1.04413 1.23428 0.96462 0.78620 1.02871 1.86442 1.22103 1.34051 1.83556 1.23280 0.81432 0.91492 0.72162 1.90698 1.61246 1.43689 1.45414 1.21937 0.79837 0.90760 1.04636 0.85172 1.22353 1.04494 1.01054 0.94750 1.86029 1.18591 1.39441 1.77661 1.19149 0.91875 0.86130 0.94794 1.21319 1.01208 0.93078 1.06694 1.21152 0.93530 0.97926 0.95597 1.21510 0.95106 0.97956 1.03035 1.18761 0.90076 0.85306 0.79344 1.90441 1.71707 1.35139 1.52058 1.21465 0.94300 1.02275 1.39513 0.88602 1.27265 1.06704 0.93643 0.91938 1.70097 1.40296 1.03967 1.27158 0.85111 0.74323 0.79027 0.80254 1.17491 1.19446 1.17557 1.21379 1.00708 0.90758 0.94262 1.20564 0.91236 1.00451 1.05272 0.92237 0.91966 0.92408 0.91295 0.91519 0.90322 0.89984 0.90956 0.91302 0.86978 0.89714 0.91034 0.82149 0.86653 0.90752 0.83978 0.83318 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.03 9.91 71.98 0.71 -0.32 16 2 C -0.12 -0.98 5.93 30.59 0.18 -0.80 16 3 C -0.11 -1.11 5.59 30.59 0.17 -0.94 16 4 C 0.06 0.89 5.47 71.98 0.39 1.28 16 5 O -0.34 -6.37 10.12 -51.40 -0.52 -6.89 16 6 C 0.47 11.17 7.33 71.23 0.52 11.69 16 7 O -0.52 -16.08 16.25 28.37 0.46 -15.62 16 8 C 0.09 1.86 2.75 29.85 0.08 1.94 16 9 H 0.13 2.38 6.30 -2.39 -0.02 2.37 16 10 C -0.17 -2.78 9.09 71.98 0.65 -2.12 16 11 O -0.30 -8.88 9.32 -70.68 -0.66 -9.54 16 12 C 0.13 4.03 6.61 22.71 0.15 4.18 16 13 C -0.20 -6.53 8.20 22.34 0.18 -6.35 16 14 C -0.06 -2.65 9.59 22.53 0.22 -2.43 16 15 C -0.17 -8.34 5.89 -19.99 -0.12 -8.46 16 16 C 0.36 21.47 6.91 25.61 0.18 21.64 16 17 O -0.60 -40.05 14.89 -4.74 -0.07 -40.12 16 18 C -0.55 -30.42 8.86 23.65 0.21 -30.22 16 19 H 0.10 4.71 6.01 -2.91 -0.02 4.70 16 20 C 0.02 1.28 5.50 85.40 0.47 1.75 16 21 N -0.79 -46.56 11.73 21.89 0.26 -46.31 16 22 Si 0.99 39.14 29.56 68.60 2.03 41.16 16 23 H -0.25 -9.29 7.11 99.48 0.71 -8.59 16 24 H -0.27 -10.17 7.11 99.48 0.71 -9.46 16 25 H -0.25 -9.34 7.11 99.48 0.71 -8.63 16 26 C -0.05 -2.11 9.43 22.53 0.21 -1.90 16 27 C -0.16 -5.33 9.97 22.34 0.22 -5.11 16 28 H 0.06 0.38 8.14 -2.39 -0.02 0.36 16 29 H 0.06 0.38 8.14 -2.39 -0.02 0.36 16 30 H 0.06 0.39 8.14 -2.39 -0.02 0.37 16 31 H 0.07 0.52 8.14 -2.39 -0.02 0.50 16 32 H 0.07 0.54 8.14 -2.39 -0.02 0.52 16 33 H 0.08 0.76 8.14 -2.39 -0.02 0.74 16 34 H 0.08 0.73 8.14 -2.39 -0.02 0.71 16 35 H 0.07 1.09 8.13 -2.39 -0.02 1.07 16 36 H 0.07 1.09 8.13 -2.39 -0.02 1.07 16 37 H 0.11 1.25 8.11 -2.39 -0.02 1.23 16 38 H 0.08 1.44 6.89 -2.39 -0.02 1.43 16 39 H 0.07 1.22 8.14 -2.39 -0.02 1.20 16 40 H 0.16 3.76 5.40 -2.91 -0.02 3.74 16 41 H 0.12 5.04 7.65 -2.91 -0.02 5.02 16 42 H 0.28 14.94 8.29 -92.71 -0.77 14.17 16 43 H 0.14 5.38 6.19 -2.91 -0.02 5.36 16 44 H 0.15 4.31 8.06 -2.91 -0.02 4.28 16 Total: -1.00 -77.91 374.54 6.95 -70.96 By element: Atomic # 1 Polarization: 21.49 SS G_CDS: 1.01 Total: 22.50 kcal Atomic # 6 Polarization: -20.59 SS G_CDS: 4.44 Total: -16.15 kcal Atomic # 7 Polarization: -46.56 SS G_CDS: 0.26 Total: -46.31 kcal Atomic # 8 Polarization: -71.38 SS G_CDS: -0.79 Total: -72.17 kcal Atomic # 14 Polarization: 39.14 SS G_CDS: 2.03 Total: 41.16 kcal Total: -77.91 6.95 -70.96 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001233524996.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -101.821 kcal (2) G-P(sol) polarization free energy of solvation -77.909 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -179.730 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.948 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.961 kcal (6) G-S(sol) free energy of system = (1) + (5) -172.782 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds