Wall clock time and date at job start Tue Mar 31 2020 12:56:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52993 * 109.47395 * 2 1 4 4 C 1.53002 * 109.47395 * 180.02562 * 3 2 1 5 5 O 1.45200 * 109.47510 * 180.02562 * 4 3 2 6 6 C 1.34220 * 117.00211 * 180.02562 * 5 4 3 7 7 O 1.20835 * 119.99862 * 359.97438 * 6 5 4 8 8 C 1.50695 * 120.00295 * 180.27643 * 6 5 4 9 9 H 1.08999 * 109.47080 * 304.72624 * 8 6 5 10 10 C 1.53005 * 109.46928 * 64.72324 * 8 6 5 11 11 O 1.42901 * 109.47631 * 184.72534 * 8 6 5 12 12 C 1.35638 * 117.00093 * 155.13541 * 11 8 6 13 13 C 1.38663 * 120.15996 * 5.41558 * 12 11 8 14 14 C 1.38093 * 120.09052 * 179.75217 * 13 12 11 15 15 C 1.38688 * 120.41374 * 0.55468 * 14 13 12 16 16 C 1.37705 * 120.32367 * 359.69757 * 15 14 13 17 17 C 1.39841 * 119.89898 * 0.02886 * 16 15 14 18 18 C 1.47532 * 120.20476 * 180.02562 * 17 16 15 19 19 O 1.21817 * 120.00107 * 179.97438 * 18 17 16 20 20 C 1.41825 * 120.00184 * 359.97438 * 18 17 16 21 21 H 1.08006 * 119.99993 * 0.02562 * 20 18 17 22 22 C 1.40323 * 120.00336 * 179.97438 * 20 18 17 23 23 N 1.30540 * 119.99644 * 359.97438 * 22 20 18 24 24 Si 1.86803 * 120.00165 * 180.02562 * 22 20 18 25 25 H 1.48505 * 109.46750 * 60.00059 * 24 22 20 26 26 H 1.48498 * 109.47226 * 179.97438 * 24 22 20 27 27 H 1.48497 * 109.47064 * 300.00288 * 24 22 20 28 28 H 1.08999 * 109.47292 * 59.99494 * 1 2 3 29 29 H 1.09001 * 109.47444 * 179.97438 * 1 2 3 30 30 H 1.09002 * 109.46969 * 299.99919 * 1 2 3 31 31 H 1.09002 * 109.46969 * 240.00081 * 2 1 3 32 32 H 1.08999 * 109.47292 * 120.00506 * 2 1 3 33 33 H 1.09002 * 109.46996 * 60.00098 * 3 2 1 34 34 H 1.08999 * 109.47314 * 300.00493 * 3 2 1 35 35 H 1.09002 * 109.46969 * 60.00081 * 4 3 2 36 36 H 1.08999 * 109.47292 * 300.00506 * 4 3 2 37 37 H 1.09000 * 109.47082 * 60.00796 * 10 8 6 38 38 H 1.09007 * 109.46990 * 180.02562 * 10 8 6 39 39 H 1.08998 * 109.46987 * 300.00050 * 10 8 6 40 40 H 1.07994 * 119.95564 * 0.02562 * 13 12 11 41 41 H 1.07997 * 119.79383 * 180.28268 * 14 13 12 42 42 H 1.07997 * 119.83747 * 179.72932 * 15 14 13 43 43 H 1.08000 * 120.05125 * 179.97438 * 16 15 14 44 44 H 0.97006 * 119.99545 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 6 3.5701 1.4424 -0.0006 5 8 4.0542 2.8113 0.0000 6 6 5.3848 2.9872 -0.0010 7 8 6.1208 2.0288 -0.0019 8 6 5.9609 4.3796 0.0058 9 1 5.5576 4.9438 -0.8351 10 6 5.5886 5.0791 1.3147 11 8 7.3836 4.3072 -0.1077 12 6 8.0158 5.3891 -0.6268 13 6 7.3009 6.5415 -0.9159 14 6 7.9469 7.6440 -1.4396 15 6 9.3102 7.6051 -1.6911 16 6 10.0359 6.4677 -1.4153 17 6 9.3962 5.3456 -0.8795 18 6 10.1673 4.1237 -0.5808 19 8 9.6064 3.1485 -0.1137 20 6 11.5615 4.0845 -0.8376 21 1 12.0589 4.9493 -1.2514 22 6 12.2950 2.9226 -0.5531 23 7 11.6941 1.8779 -0.0516 24 14 14.1316 2.8712 -0.8907 25 1 14.8103 3.9273 -0.0974 26 1 14.6687 1.5414 -0.5057 27 1 14.3757 3.1046 -2.3368 28 1 -0.3634 0.5139 -0.8899 29 1 -0.3634 -1.0276 -0.0005 30 1 -0.3633 0.5138 0.8900 31 1 1.8933 -0.5138 -0.8900 32 1 1.8934 -0.5139 0.8899 33 1 1.6768 1.9562 0.8900 34 1 1.6767 1.9563 -0.8899 35 1 3.9330 0.9287 -0.8909 36 1 3.9338 0.9284 0.8890 37 1 5.9920 4.5150 2.1556 38 1 6.0050 6.0865 1.3195 39 1 4.5035 5.1344 1.4012 40 1 6.2382 6.5785 -0.7272 41 1 7.3862 8.5406 -1.6587 42 1 9.8052 8.4712 -2.1049 43 1 11.0973 6.4421 -1.6133 44 1 12.2011 1.0745 0.1447 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001233525377.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:56:57 Heat of formation + Delta-G solvation = -145.402068 kcal Electronic energy + Delta-G solvation = -26626.243201 eV Core-core repulsion = 22702.155139 eV Total energy + Delta-G solvation = -3924.088062 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 320.150 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -40.57421 -39.48967 -37.31864 -36.43989 -35.93300 -35.14275 -32.59920 -31.98546 -30.52067 -29.67407 -29.09252 -26.62446 -25.21425 -23.66929 -22.92837 -21.92035 -21.43282 -20.25960 -19.78980 -17.85691 -17.09693 -16.78697 -16.62729 -16.32866 -15.53358 -15.38966 -14.84742 -14.73228 -14.48477 -14.15179 -13.78495 -13.62381 -13.41358 -13.28860 -12.83556 -12.67690 -12.46246 -12.31059 -12.12355 -11.97760 -11.64735 -11.54303 -11.40386 -11.35014 -11.30707 -11.21240 -11.03922 -10.84649 -10.69869 -10.54047 -10.48838 -10.26241 -10.05104 -9.94320 -8.87482 -8.22751 -7.50429 -7.27158 -6.15265 -4.76523 1.78474 1.98910 2.34723 2.41282 3.13163 3.18224 3.20066 3.84048 4.08694 4.08798 4.45014 4.59855 4.69533 4.69803 4.81262 4.92410 4.98342 5.02384 5.20653 5.26273 5.29009 5.33462 5.48693 5.49524 5.54232 5.59794 5.66151 5.70458 5.76398 5.89677 5.90581 5.93404 5.97961 6.09659 6.16489 6.28573 6.49174 6.66038 6.87146 6.91218 7.14282 7.35295 7.43216 7.92125 8.05218 8.12592 8.91275 8.96133 10.46161 10.69692 Molecular weight = 320.15amu Principal moments of inertia in cm(-1) A = 0.013309 B = 0.003212 C = 0.002662 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2103.356533 B = 8716.223618 C =10515.291137 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.124 4.124 3 C -0.118 4.118 4 C 0.065 3.935 5 O -0.360 6.360 6 C 0.457 3.543 7 O -0.457 6.457 8 C 0.089 3.911 9 H 0.103 0.897 10 C -0.172 4.172 11 O -0.243 6.243 12 C 0.145 3.855 13 C -0.230 4.230 14 C -0.093 4.093 15 C -0.172 4.172 16 C -0.059 4.059 17 C -0.128 4.128 18 C 0.385 3.615 19 O -0.507 6.507 20 C -0.522 4.522 21 H 0.071 0.929 22 C 0.080 3.920 23 N -0.736 5.736 24 Si 0.904 3.096 25 H -0.265 1.265 26 H -0.279 1.279 27 H -0.265 1.265 28 H 0.055 0.945 29 H 0.056 0.944 30 H 0.055 0.945 31 H 0.066 0.934 32 H 0.066 0.934 33 H 0.074 0.926 34 H 0.074 0.926 35 H 0.071 0.929 36 H 0.071 0.929 37 H 0.074 0.926 38 H 0.079 0.921 39 H 0.080 0.920 40 H 0.122 0.878 41 H 0.115 0.885 42 H 0.116 0.884 43 H 0.136 0.864 44 H 0.273 0.727 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.249 4.881 -0.526 17.934 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.161 4.161 3 C -0.155 4.155 4 C -0.009 4.009 5 O -0.279 6.279 6 C 0.296 3.704 7 O -0.339 6.339 8 C 0.031 3.969 9 H 0.120 0.880 10 C -0.229 4.229 11 O -0.155 6.155 12 C 0.099 3.901 13 C -0.248 4.248 14 C -0.111 4.111 15 C -0.190 4.190 16 C -0.077 4.077 17 C -0.130 4.130 18 C 0.278 3.722 19 O -0.394 6.394 20 C -0.554 4.554 21 H 0.089 0.911 22 C -0.143 4.143 23 N -0.365 5.365 24 Si 0.728 3.272 25 H -0.190 1.190 26 H -0.204 1.204 27 H -0.190 1.190 28 H 0.074 0.926 29 H 0.075 0.925 30 H 0.074 0.926 31 H 0.085 0.915 32 H 0.085 0.915 33 H 0.092 0.908 34 H 0.092 0.908 35 H 0.089 0.911 36 H 0.089 0.911 37 H 0.093 0.907 38 H 0.098 0.902 39 H 0.099 0.901 40 H 0.139 0.861 41 H 0.133 0.867 42 H 0.134 0.866 43 H 0.154 0.846 44 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -17.269 3.686 -0.145 17.659 hybrid contribution 0.835 0.198 -0.330 0.919 sum -16.434 3.884 -0.475 16.893 Atomic orbital electron populations 1.21744 0.95196 1.01836 1.02012 1.21447 0.96302 0.95653 1.02741 1.21599 0.92429 0.97820 1.03693 1.23099 0.94580 0.80172 1.03004 1.86403 1.24109 1.32398 1.84981 1.23154 0.80727 0.92094 0.74428 1.90831 1.59778 1.42067 1.41258 1.21549 0.83649 0.90642 1.01104 0.88003 1.22303 1.02635 1.01752 0.96197 1.86580 1.15523 1.36603 1.76775 1.19406 0.92150 0.85387 0.93173 1.21112 0.99693 0.94515 1.09516 1.20804 0.94652 0.97097 0.98586 1.20988 0.94298 0.98730 1.04967 1.21430 1.00317 0.91058 0.94894 1.21646 0.90809 0.99970 1.00577 1.18033 0.88431 0.84371 0.81345 1.90627 1.71832 1.35053 1.41870 1.20843 0.94723 0.99408 1.40403 0.91077 1.25961 1.00085 0.95044 0.93210 1.69979 1.36917 1.02059 1.27499 0.86481 0.82787 0.78179 0.79735 1.19009 1.20390 1.19015 0.92574 0.92496 0.92570 0.91514 0.91510 0.90758 0.90777 0.91096 0.91072 0.90679 0.90208 0.90141 0.86057 0.86714 0.86627 0.84596 0.91600 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.94 9.91 37.16 0.37 -0.57 16 2 C -0.12 -0.92 5.93 -26.73 -0.16 -1.08 16 3 C -0.12 -1.02 5.59 -26.73 -0.15 -1.17 16 4 C 0.07 0.79 5.47 37.16 0.20 1.00 16 5 O -0.36 -5.17 10.21 -39.23 -0.40 -5.57 16 6 C 0.46 8.32 7.29 36.00 0.26 8.58 16 7 O -0.46 -10.65 16.26 -25.47 -0.41 -11.06 16 8 C 0.09 1.52 2.75 -27.88 -0.08 1.44 16 9 H 0.10 1.44 6.32 -51.93 -0.33 1.12 16 10 C -0.17 -2.31 9.15 37.16 0.34 -1.97 16 11 O -0.24 -5.64 7.42 -48.85 -0.36 -6.01 16 12 C 0.14 3.18 6.62 -38.61 -0.26 2.92 16 13 C -0.23 -3.89 8.23 -39.48 -0.32 -4.21 16 14 C -0.09 -1.43 10.04 -39.47 -0.40 -1.83 16 15 C -0.17 -2.83 10.02 -39.61 -0.40 -3.22 16 16 C -0.06 -1.19 9.43 -39.18 -0.37 -1.56 16 17 C -0.13 -3.13 5.90 -104.69 -0.62 -3.75 16 18 C 0.39 11.42 6.91 -34.42 -0.24 11.18 16 19 O -0.51 -17.06 13.71 -16.75 -0.23 -17.29 16 20 C -0.52 -14.79 8.86 -37.43 -0.33 -15.12 16 21 H 0.07 1.80 6.02 -52.48 -0.32 1.48 16 22 C 0.08 2.23 5.50 -17.32 -0.10 2.13 16 23 N -0.74 -22.18 11.73 55.57 0.65 -21.52 16 24 Si 0.90 19.90 29.56 -169.99 -5.03 14.87 16 25 H -0.27 -5.65 7.11 56.52 0.40 -5.25 16 26 H -0.28 -6.00 7.11 56.52 0.40 -5.60 16 27 H -0.27 -5.67 7.11 56.52 0.40 -5.27 16 28 H 0.06 0.33 8.14 -51.93 -0.42 -0.09 16 29 H 0.06 0.32 8.14 -51.93 -0.42 -0.10 16 30 H 0.06 0.33 8.14 -51.93 -0.42 -0.09 16 31 H 0.07 0.50 8.14 -51.93 -0.42 0.07 16 32 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16 33 H 0.07 0.61 8.14 -51.93 -0.42 0.18 16 34 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16 35 H 0.07 0.90 8.13 -51.93 -0.42 0.47 16 36 H 0.07 0.89 8.13 -51.93 -0.42 0.47 16 37 H 0.07 1.11 8.14 -51.93 -0.42 0.68 16 38 H 0.08 1.00 6.90 -51.93 -0.36 0.64 16 39 H 0.08 0.83 8.14 -51.93 -0.42 0.41 16 40 H 0.12 1.64 5.42 -52.49 -0.28 1.36 16 41 H 0.11 1.36 8.06 -52.49 -0.42 0.93 16 42 H 0.12 1.53 8.06 -52.49 -0.42 1.11 16 43 H 0.14 2.63 6.20 -52.49 -0.33 2.30 16 44 H 0.27 7.43 8.29 -40.82 -0.34 7.09 16 LS Contribution 372.64 15.07 5.62 5.62 Total: -1.00 -37.37 372.64 -8.64 -46.01 By element: Atomic # 1 Polarization: 8.43 SS G_CDS: -6.24 Total: 2.19 kcal Atomic # 6 Polarization: -5.00 SS G_CDS: -2.24 Total: -7.23 kcal Atomic # 7 Polarization: -22.18 SS G_CDS: 0.65 Total: -21.52 kcal Atomic # 8 Polarization: -38.52 SS G_CDS: -1.41 Total: -39.93 kcal Atomic # 14 Polarization: 19.90 SS G_CDS: -5.03 Total: 14.87 kcal Total LS contribution 5.62 Total: 5.62 kcal Total: -37.37 -8.64 -46.01 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001233525377.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -99.389 kcal (2) G-P(sol) polarization free energy of solvation -37.370 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -136.759 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.643 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.013 kcal (6) G-S(sol) free energy of system = (1) + (5) -145.402 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds