Wall clock time and date at job start Tue Mar 31 2020 12:56:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52993 * 109.47395 * 2 1 4 4 C 1.53002 * 109.47395 * 180.02562 * 3 2 1 5 5 O 1.45200 * 109.47510 * 180.02562 * 4 3 2 6 6 C 1.34220 * 117.00211 * 180.02562 * 5 4 3 7 7 O 1.20835 * 119.99862 * 359.97438 * 6 5 4 8 8 C 1.50695 * 120.00295 * 180.27643 * 6 5 4 9 9 H 1.08999 * 109.47080 * 304.72624 * 8 6 5 10 10 C 1.53005 * 109.46928 * 64.72324 * 8 6 5 11 11 O 1.42901 * 109.47631 * 184.72534 * 8 6 5 12 12 C 1.35638 * 117.00093 * 155.13541 * 11 8 6 13 13 C 1.38663 * 120.15996 * 5.41558 * 12 11 8 14 14 C 1.38093 * 120.09052 * 179.75217 * 13 12 11 15 15 C 1.38688 * 120.41374 * 0.55468 * 14 13 12 16 16 C 1.37705 * 120.32367 * 359.69757 * 15 14 13 17 17 C 1.39841 * 119.89898 * 0.02886 * 16 15 14 18 18 C 1.47532 * 120.20476 * 180.02562 * 17 16 15 19 19 O 1.21817 * 120.00107 * 179.97438 * 18 17 16 20 20 C 1.41825 * 120.00184 * 359.97438 * 18 17 16 21 21 H 1.08006 * 119.99993 * 0.02562 * 20 18 17 22 22 C 1.40323 * 120.00336 * 179.97438 * 20 18 17 23 23 N 1.30540 * 119.99644 * 359.97438 * 22 20 18 24 24 Si 1.86803 * 120.00165 * 180.02562 * 22 20 18 25 25 H 1.48505 * 109.46750 * 60.00059 * 24 22 20 26 26 H 1.48498 * 109.47226 * 179.97438 * 24 22 20 27 27 H 1.48497 * 109.47064 * 300.00288 * 24 22 20 28 28 H 1.08999 * 109.47292 * 59.99494 * 1 2 3 29 29 H 1.09001 * 109.47444 * 179.97438 * 1 2 3 30 30 H 1.09002 * 109.46969 * 299.99919 * 1 2 3 31 31 H 1.09002 * 109.46969 * 240.00081 * 2 1 3 32 32 H 1.08999 * 109.47292 * 120.00506 * 2 1 3 33 33 H 1.09002 * 109.46996 * 60.00098 * 3 2 1 34 34 H 1.08999 * 109.47314 * 300.00493 * 3 2 1 35 35 H 1.09002 * 109.46969 * 60.00081 * 4 3 2 36 36 H 1.08999 * 109.47292 * 300.00506 * 4 3 2 37 37 H 1.09000 * 109.47082 * 60.00796 * 10 8 6 38 38 H 1.09007 * 109.46990 * 180.02562 * 10 8 6 39 39 H 1.08998 * 109.46987 * 300.00050 * 10 8 6 40 40 H 1.07994 * 119.95564 * 0.02562 * 13 12 11 41 41 H 1.07997 * 119.79383 * 180.28268 * 14 13 12 42 42 H 1.07997 * 119.83747 * 179.72932 * 15 14 13 43 43 H 1.08000 * 120.05125 * 179.97438 * 16 15 14 44 44 H 0.97006 * 119.99545 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 6 3.5701 1.4424 -0.0006 5 8 4.0542 2.8113 0.0000 6 6 5.3848 2.9872 -0.0010 7 8 6.1208 2.0288 -0.0019 8 6 5.9609 4.3796 0.0058 9 1 5.5576 4.9438 -0.8351 10 6 5.5886 5.0791 1.3147 11 8 7.3836 4.3072 -0.1077 12 6 8.0158 5.3891 -0.6268 13 6 7.3009 6.5415 -0.9159 14 6 7.9469 7.6440 -1.4396 15 6 9.3102 7.6051 -1.6911 16 6 10.0359 6.4677 -1.4153 17 6 9.3962 5.3456 -0.8795 18 6 10.1673 4.1237 -0.5808 19 8 9.6064 3.1485 -0.1137 20 6 11.5615 4.0845 -0.8376 21 1 12.0589 4.9493 -1.2514 22 6 12.2950 2.9226 -0.5531 23 7 11.6941 1.8779 -0.0516 24 14 14.1316 2.8712 -0.8907 25 1 14.8103 3.9273 -0.0974 26 1 14.6687 1.5414 -0.5057 27 1 14.3757 3.1046 -2.3368 28 1 -0.3634 0.5139 -0.8899 29 1 -0.3634 -1.0276 -0.0005 30 1 -0.3633 0.5138 0.8900 31 1 1.8933 -0.5138 -0.8900 32 1 1.8934 -0.5139 0.8899 33 1 1.6768 1.9562 0.8900 34 1 1.6767 1.9563 -0.8899 35 1 3.9330 0.9287 -0.8909 36 1 3.9338 0.9284 0.8890 37 1 5.9920 4.5150 2.1556 38 1 6.0050 6.0865 1.3195 39 1 4.5035 5.1344 1.4012 40 1 6.2382 6.5785 -0.7272 41 1 7.3862 8.5406 -1.6587 42 1 9.8052 8.4712 -2.1049 43 1 11.0973 6.4421 -1.6133 44 1 12.2011 1.0745 0.1447 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001233525377.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:56:57 Heat of formation + Delta-G solvation = -168.294661 kcal Electronic energy + Delta-G solvation = -26627.235898 eV Core-core repulsion = 22702.155139 eV Total energy + Delta-G solvation = -3925.080759 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 320.150 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -41.99886 -40.96229 -38.88033 -37.99529 -37.68273 -35.99831 -34.72909 -33.32490 -32.09431 -30.63505 -30.41450 -28.68412 -26.37165 -24.65993 -24.56792 -23.32064 -22.19541 -21.59810 -21.56036 -19.33359 -18.52443 -18.47375 -18.01447 -17.78860 -17.27596 -16.56136 -16.25662 -16.07578 -15.93255 -15.35641 -15.08207 -14.97964 -14.62620 -14.55243 -14.36271 -14.15716 -13.96688 -13.55395 -13.25326 -13.15699 -13.13535 -12.90657 -12.85022 -12.70115 -12.62832 -12.33948 -12.14501 -12.10705 -12.03691 -12.02548 -11.83094 -11.76986 -11.48249 -11.37597 -10.95813 -9.72360 -9.44892 -9.03361 -8.25835 -7.00777 0.26957 0.56887 0.96197 1.08005 1.35102 1.39993 1.51599 2.21428 2.30738 2.49921 2.91911 3.36518 3.60054 3.73318 3.81194 3.83670 3.86124 3.99583 4.04610 4.12055 4.25864 4.31312 4.33871 4.48653 4.54136 4.57927 4.61320 4.67220 4.82146 4.84358 4.85657 4.93494 5.04534 5.13341 5.17100 5.23457 5.27572 5.28989 5.39130 5.41845 5.55086 5.71903 5.95208 6.05522 6.48365 6.63686 6.74609 6.90641 8.36275 8.58589 Molecular weight = 320.15amu Principal moments of inertia in cm(-1) A = 0.013309 B = 0.003212 C = 0.002662 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2103.356533 B = 8716.223618 C =10515.291137 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.125 4.125 3 C -0.106 4.106 4 C 0.056 3.944 5 O -0.341 6.341 6 C 0.461 3.539 7 O -0.524 6.524 8 C 0.079 3.921 9 H 0.137 0.863 10 C -0.161 4.161 11 O -0.296 6.296 12 C 0.125 3.875 13 C -0.220 4.220 14 C -0.068 4.068 15 C -0.163 4.163 16 C -0.063 4.063 17 C -0.192 4.192 18 C 0.360 3.640 19 O -0.570 6.570 20 C -0.552 4.552 21 H 0.094 0.906 22 C 0.019 3.981 23 N -0.796 5.796 24 Si 0.997 3.003 25 H -0.248 1.248 26 H -0.273 1.273 27 H -0.250 1.250 28 H 0.060 0.940 29 H 0.062 0.938 30 H 0.061 0.939 31 H 0.063 0.937 32 H 0.064 0.936 33 H 0.085 0.915 34 H 0.084 0.916 35 H 0.060 0.940 36 H 0.062 0.938 37 H 0.050 0.950 38 H 0.095 0.905 39 H 0.119 0.881 40 H 0.161 0.839 41 H 0.171 0.829 42 H 0.159 0.841 43 H 0.133 0.867 44 H 0.278 0.722 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.683 8.871 -1.698 20.752 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.162 4.162 3 C -0.143 4.143 4 C -0.017 4.017 5 O -0.258 6.258 6 C 0.303 3.697 7 O -0.411 6.411 8 C 0.022 3.978 9 H 0.154 0.846 10 C -0.218 4.218 11 O -0.209 6.209 12 C 0.079 3.921 13 C -0.238 4.238 14 C -0.085 4.085 15 C -0.181 4.181 16 C -0.082 4.082 17 C -0.193 4.193 18 C 0.257 3.743 19 O -0.462 6.462 20 C -0.583 4.583 21 H 0.112 0.888 22 C -0.199 4.199 23 N -0.426 5.426 24 Si 0.815 3.185 25 H -0.172 1.172 26 H -0.198 1.198 27 H -0.173 1.173 28 H 0.079 0.921 29 H 0.081 0.919 30 H 0.080 0.920 31 H 0.082 0.918 32 H 0.083 0.917 33 H 0.104 0.896 34 H 0.102 0.898 35 H 0.079 0.921 36 H 0.081 0.919 37 H 0.069 0.931 38 H 0.113 0.887 39 H 0.138 0.862 40 H 0.179 0.821 41 H 0.189 0.811 42 H 0.176 0.824 43 H 0.151 0.849 44 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -18.742 7.733 -1.329 20.318 hybrid contribution 1.104 -0.953 0.009 1.458 sum -17.638 6.780 -1.320 18.942 Atomic orbital electron populations 1.21726 0.93776 1.02449 1.02549 1.21473 0.97440 0.94719 1.02597 1.21601 0.89094 0.98943 1.04710 1.23424 0.97084 0.79012 1.02219 1.86411 1.21807 1.33652 1.83955 1.23680 0.81377 0.92199 0.72423 1.90812 1.61482 1.44174 1.44665 1.22040 0.81267 0.90273 1.04239 0.84552 1.22308 1.05019 1.01388 0.93120 1.86507 1.18739 1.38358 1.77280 1.19657 0.91773 0.86818 0.93811 1.21519 1.01370 0.92830 1.08102 1.21489 0.94356 0.97948 0.94742 1.21429 0.94985 0.98198 1.03462 1.21483 1.00563 0.91350 0.94770 1.21268 0.92575 0.99600 1.05882 1.18854 0.89733 0.85664 0.79999 1.90565 1.73192 1.37836 1.44617 1.21409 0.95231 1.00760 1.40893 0.88765 1.27336 1.06678 0.93968 0.91898 1.70182 1.39871 1.03231 1.29315 0.85096 0.74275 0.78748 0.80393 1.17205 1.19762 1.17344 0.92058 0.91912 0.91993 0.91799 0.91709 0.89612 0.89776 0.92113 0.91937 0.93083 0.88671 0.86219 0.82128 0.81138 0.82352 0.84938 0.91220 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.60 9.91 71.98 0.71 -0.88 16 2 C -0.12 -1.77 5.93 30.59 0.18 -1.59 16 3 C -0.11 -1.73 5.59 30.59 0.17 -1.55 16 4 C 0.06 1.41 5.47 71.98 0.39 1.80 16 5 O -0.34 -9.78 10.21 -51.32 -0.52 -10.30 16 6 C 0.46 17.57 7.29 71.23 0.52 18.09 16 7 O -0.52 -26.66 16.26 28.36 0.46 -26.20 16 8 C 0.08 2.70 2.75 29.85 0.08 2.78 16 9 H 0.14 3.56 6.32 -2.39 -0.02 3.54 16 10 C -0.16 -4.11 9.15 71.98 0.66 -3.45 16 11 O -0.30 -14.50 7.42 -60.60 -0.45 -14.95 16 12 C 0.13 5.58 6.62 22.90 0.15 5.73 16 13 C -0.22 -6.69 8.23 22.34 0.18 -6.51 16 14 C -0.07 -1.70 10.04 22.34 0.22 -1.47 16 15 C -0.16 -4.69 10.02 22.25 0.22 -4.46 16 16 C -0.06 -2.54 9.43 22.53 0.21 -2.32 16 17 C -0.19 -9.77 5.90 -19.91 -0.12 -9.89 16 18 C 0.36 23.02 6.91 25.61 0.18 23.20 16 19 O -0.57 -42.04 13.71 16.15 0.22 -41.82 16 20 C -0.55 -33.02 8.86 23.66 0.21 -32.81 16 21 H 0.09 4.94 6.02 -2.91 -0.02 4.92 16 22 C 0.02 1.09 5.50 85.39 0.47 1.56 16 23 N -0.80 -51.50 11.73 21.88 0.26 -51.24 16 24 Si 1.00 42.06 29.56 68.60 2.03 44.09 16 25 H -0.25 -9.72 7.11 99.48 0.71 -9.01 16 26 H -0.27 -11.11 7.11 99.48 0.71 -10.40 16 27 H -0.25 -9.82 7.11 99.48 0.71 -9.11 16 28 H 0.06 0.61 8.14 -2.39 -0.02 0.59 16 29 H 0.06 0.62 8.14 -2.39 -0.02 0.60 16 30 H 0.06 0.61 8.14 -2.39 -0.02 0.59 16 31 H 0.06 0.94 8.14 -2.39 -0.02 0.92 16 32 H 0.06 0.94 8.14 -2.39 -0.02 0.92 16 33 H 0.09 1.23 8.14 -2.39 -0.02 1.21 16 34 H 0.08 1.23 8.14 -2.39 -0.02 1.21 16 35 H 0.06 1.65 8.13 -2.39 -0.02 1.63 16 36 H 0.06 1.68 8.13 -2.39 -0.02 1.66 16 37 H 0.05 1.54 8.14 -2.39 -0.02 1.52 16 38 H 0.09 2.12 6.90 -2.38 -0.02 2.11 16 39 H 0.12 2.06 8.14 -2.39 -0.02 2.04 16 40 H 0.16 3.50 5.42 -2.91 -0.02 3.49 16 41 H 0.17 2.54 8.06 -2.91 -0.02 2.51 16 42 H 0.16 3.23 8.06 -2.91 -0.02 3.21 16 43 H 0.13 5.15 6.20 -2.91 -0.02 5.13 16 44 H 0.28 16.19 8.29 -92.70 -0.77 15.42 16 Total: -1.00 -94.98 372.64 7.46 -87.53 By element: Atomic # 1 Polarization: 23.67 SS G_CDS: 1.01 Total: 24.68 kcal Atomic # 6 Polarization: -16.24 SS G_CDS: 4.45 Total: -11.79 kcal Atomic # 7 Polarization: -51.50 SS G_CDS: 0.26 Total: -51.24 kcal Atomic # 8 Polarization: -92.97 SS G_CDS: -0.29 Total: -93.26 kcal Atomic # 14 Polarization: 42.06 SS G_CDS: 2.03 Total: 44.09 kcal Total: -94.98 7.46 -87.53 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001233525377.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -80.767 kcal (2) G-P(sol) polarization free energy of solvation -94.983 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -175.750 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.455 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -87.527 kcal (6) G-S(sol) free energy of system = (1) + (5) -168.295 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds