Wall clock time and date at job start Tue Mar 31 2020 12:57:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53001 * 109.47075 * 2 1 4 4 C 1.52996 * 109.47075 * 179.97438 * 3 2 1 5 5 O 1.45201 * 109.47319 * 179.97438 * 4 3 2 6 6 C 1.34224 * 117.00234 * 179.97438 * 5 4 3 7 7 O 1.20825 * 120.00013 * 0.02562 * 6 5 4 8 8 C 1.50705 * 119.99825 * 180.02562 * 6 5 4 9 9 H 1.08996 * 109.47575 * 59.99990 * 8 6 5 10 10 C 1.53003 * 109.47039 * 299.99860 * 8 6 5 11 11 O 1.42898 * 109.46950 * 180.02562 * 8 6 5 12 12 C 1.35632 * 117.00147 * 205.02244 * 11 8 6 13 13 C 1.38666 * 120.16110 * 354.75833 * 12 11 8 14 14 C 1.38093 * 120.09769 * 180.02562 * 13 12 11 15 15 C 1.38689 * 120.41259 * 359.95879 * 14 13 12 16 16 C 1.37700 * 120.32281 * 359.97438 * 15 14 13 17 17 C 1.39846 * 119.89794 * 0.27509 * 16 15 14 18 18 C 1.47543 * 120.20207 * 179.72322 * 17 16 15 19 19 O 1.21814 * 119.99757 * 180.02562 * 18 17 16 20 20 C 1.41832 * 120.00018 * 0.02562 * 18 17 16 21 21 H 1.07999 * 119.99869 * 6.79067 * 20 18 17 22 22 C 1.40319 * 119.99797 * 186.79515 * 20 18 17 23 23 N 1.30544 * 120.00209 * 353.86589 * 22 20 18 24 24 Si 1.86805 * 119.99806 * 173.87085 * 22 20 18 25 25 H 1.48500 * 109.47277 * 94.98263 * 24 22 20 26 26 H 1.48508 * 109.46724 * 214.98230 * 24 22 20 27 27 H 1.48497 * 109.46847 * 334.97880 * 24 22 20 28 28 H 1.09001 * 109.47657 * 59.99644 * 1 2 3 29 29 H 1.09000 * 109.47312 * 180.02562 * 1 2 3 30 30 H 1.09001 * 109.47226 * 299.99271 * 1 2 3 31 31 H 1.08998 * 109.46726 * 240.00777 * 2 1 3 32 32 H 1.08997 * 109.47180 * 120.00350 * 2 1 3 33 33 H 1.09001 * 109.46498 * 60.00283 * 3 2 1 34 34 H 1.09001 * 109.47169 * 300.00655 * 3 2 1 35 35 H 1.09001 * 109.47226 * 60.00729 * 4 3 2 36 36 H 1.09001 * 109.47657 * 300.00356 * 4 3 2 37 37 H 1.09003 * 109.46940 * 60.00306 * 10 8 6 38 38 H 1.09001 * 109.46900 * 180.02562 * 10 8 6 39 39 H 1.09000 * 109.47474 * 300.00246 * 10 8 6 40 40 H 1.08007 * 119.95446 * 0.02562 * 13 12 11 41 41 H 1.07992 * 119.79390 * 179.97438 * 14 13 12 42 42 H 1.07996 * 119.83664 * 180.02562 * 15 14 13 43 43 H 1.07999 * 120.04851 * 179.97438 * 16 15 14 44 44 H 0.97002 * 120.00155 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 3.5699 1.4425 0.0006 5 8 4.0540 2.8115 0.0000 6 6 5.3846 2.9873 0.0010 7 8 6.1206 2.0291 0.0019 8 6 5.9606 4.3800 0.0011 9 1 5.6240 4.9124 0.8906 10 6 5.4900 5.1265 -1.2488 11 8 7.3876 4.3052 0.0016 12 6 8.0597 5.3666 0.5129 13 6 7.3706 6.5043 0.9050 14 6 8.0563 7.5844 1.4249 15 6 9.4359 7.5412 1.5600 16 6 10.1372 6.4196 1.1773 17 6 9.4567 5.3202 0.6444 18 6 10.2021 4.1174 0.2265 19 8 9.6057 3.1621 -0.2378 20 6 11.6129 4.0735 0.3653 21 1 12.1304 4.8722 0.8759 22 6 12.3363 2.9925 -0.1610 23 7 11.7042 1.9707 -0.6714 24 14 14.2040 3.0153 -0.1309 25 1 14.6885 2.2952 1.0740 26 1 14.7268 2.3480 -1.3502 27 1 14.6812 4.4210 -0.0928 28 1 -0.3634 0.5139 -0.8899 29 1 -0.3634 -1.0276 0.0005 30 1 -0.3634 0.5137 0.8901 31 1 1.8932 -0.5137 -0.8901 32 1 1.8933 -0.5139 0.8899 33 1 1.6766 1.9562 0.8901 34 1 1.6765 1.9564 -0.8899 35 1 3.9336 0.9287 -0.8892 36 1 3.9330 0.9288 0.8908 37 1 4.4015 5.1836 -1.2497 38 1 5.9070 6.1336 -1.2490 39 1 5.8266 4.5941 -2.1384 40 1 6.2961 6.5457 0.8038 41 1 7.5148 8.4681 1.7284 42 1 9.9627 8.3911 1.9681 43 1 11.2115 6.3910 1.2841 44 1 12.2043 1.2235 -1.0355 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001233525382.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:57:00 Heat of formation + Delta-G solvation = -145.490093 kcal Electronic energy + Delta-G solvation = -26622.897571 eV Core-core repulsion = 22698.805692 eV Total energy + Delta-G solvation = -3924.091879 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 320.150 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -40.57709 -39.49066 -37.31752 -36.44455 -35.93616 -35.14637 -32.60473 -31.99170 -30.52065 -29.66965 -29.09006 -26.62709 -25.19633 -23.68112 -22.92860 -21.91984 -21.43398 -20.26703 -19.79098 -17.85510 -17.10277 -16.78386 -16.63750 -16.33616 -15.53742 -15.37581 -14.84328 -14.73870 -14.48167 -14.15314 -13.78682 -13.61929 -13.41853 -13.28406 -12.83096 -12.68216 -12.46646 -12.30741 -12.12919 -11.98241 -11.64570 -11.54445 -11.43134 -11.35040 -11.29886 -11.20610 -11.04130 -10.87520 -10.69519 -10.52192 -10.48852 -10.25277 -10.04929 -9.94600 -8.87688 -8.22772 -7.50390 -7.27130 -6.16717 -4.76012 1.78414 1.99155 2.33227 2.42430 3.10818 3.18446 3.22186 3.84026 4.07488 4.09763 4.44829 4.59758 4.69348 4.69467 4.81004 4.91817 4.98182 5.02400 5.20561 5.26153 5.28940 5.33532 5.48558 5.49458 5.55008 5.59904 5.66844 5.70862 5.76349 5.89527 5.90490 5.92243 5.97847 6.10424 6.16742 6.28843 6.48969 6.66036 6.87104 6.91296 7.14416 7.35413 7.43361 7.92065 8.04864 8.13392 8.91353 8.95882 10.45496 10.68967 Molecular weight = 320.15amu Principal moments of inertia in cm(-1) A = 0.013550 B = 0.003190 C = 0.002650 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2065.964848 B = 8775.058667 C =10562.687180 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.124 4.124 3 C -0.118 4.118 4 C 0.065 3.935 5 O -0.360 6.360 6 C 0.457 3.543 7 O -0.458 6.458 8 C 0.089 3.911 9 H 0.103 0.897 10 C -0.172 4.172 11 O -0.243 6.243 12 C 0.145 3.855 13 C -0.230 4.230 14 C -0.093 4.093 15 C -0.172 4.172 16 C -0.058 4.058 17 C -0.128 4.128 18 C 0.386 3.614 19 O -0.508 6.508 20 C -0.523 4.523 21 H 0.072 0.928 22 C 0.080 3.920 23 N -0.736 5.736 24 Si 0.903 3.097 25 H -0.271 1.271 26 H -0.277 1.277 27 H -0.261 1.261 28 H 0.055 0.945 29 H 0.056 0.944 30 H 0.055 0.945 31 H 0.066 0.934 32 H 0.066 0.934 33 H 0.073 0.927 34 H 0.074 0.926 35 H 0.071 0.929 36 H 0.070 0.930 37 H 0.080 0.920 38 H 0.078 0.922 39 H 0.074 0.926 40 H 0.122 0.878 41 H 0.115 0.885 42 H 0.116 0.884 43 H 0.136 0.864 44 H 0.272 0.728 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.199 4.810 1.854 17.955 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.161 4.161 3 C -0.155 4.155 4 C -0.009 4.009 5 O -0.279 6.279 6 C 0.296 3.704 7 O -0.340 6.340 8 C 0.030 3.970 9 H 0.121 0.879 10 C -0.229 4.229 11 O -0.155 6.155 12 C 0.099 3.901 13 C -0.249 4.249 14 C -0.111 4.111 15 C -0.190 4.190 16 C -0.077 4.077 17 C -0.130 4.130 18 C 0.279 3.721 19 O -0.394 6.394 20 C -0.554 4.554 21 H 0.090 0.910 22 C -0.143 4.143 23 N -0.365 5.365 24 Si 0.727 3.273 25 H -0.196 1.196 26 H -0.202 1.202 27 H -0.185 1.185 28 H 0.074 0.926 29 H 0.075 0.925 30 H 0.074 0.926 31 H 0.085 0.915 32 H 0.085 0.915 33 H 0.092 0.908 34 H 0.093 0.907 35 H 0.089 0.911 36 H 0.089 0.911 37 H 0.099 0.901 38 H 0.097 0.903 39 H 0.093 0.907 40 H 0.139 0.861 41 H 0.133 0.867 42 H 0.134 0.866 43 H 0.154 0.846 44 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -17.247 3.642 1.449 17.686 hybrid contribution 0.861 0.214 0.186 0.906 sum -16.386 3.856 1.634 16.913 Atomic orbital electron populations 1.21743 0.95197 1.01837 1.02011 1.21447 0.96302 0.95655 1.02739 1.21599 0.92428 0.97819 1.03693 1.23099 0.94582 0.80177 1.03001 1.86404 1.24092 1.32383 1.84975 1.23156 0.80735 0.92079 0.74405 1.90826 1.59787 1.42081 1.41318 1.21559 0.83369 0.90482 1.01545 0.87916 1.22304 1.02191 1.01347 0.97048 1.86576 1.14456 1.38448 1.76002 1.19401 0.91752 0.85725 0.93204 1.21112 0.99543 0.95043 1.09165 1.20803 0.94360 0.97219 0.98739 1.20987 0.94168 0.98921 1.04924 1.21430 1.00461 0.91200 0.94564 1.21641 0.90222 1.00133 1.01033 1.18045 0.88763 0.84154 0.81163 1.90621 1.70618 1.35642 1.42519 1.20863 0.93560 1.06046 1.34957 0.91007 1.25959 1.00261 0.94496 0.93545 1.69992 1.37050 1.04304 1.25134 0.86417 0.83004 0.79428 0.78407 1.19612 1.20218 1.18535 0.92562 0.92498 0.92582 0.91500 0.91524 0.90788 0.90744 0.91053 0.91120 0.90087 0.90284 0.90711 0.86068 0.86714 0.86626 0.84584 0.91670 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.94 9.91 37.16 0.37 -0.57 16 2 C -0.12 -0.92 5.93 -26.73 -0.16 -1.08 16 3 C -0.12 -1.02 5.59 -26.73 -0.15 -1.17 16 4 C 0.07 0.79 5.47 37.16 0.20 0.99 16 5 O -0.36 -5.15 10.12 -39.24 -0.40 -5.54 16 6 C 0.46 8.31 7.33 36.01 0.26 8.57 16 7 O -0.46 -10.65 16.25 -25.48 -0.41 -11.06 16 8 C 0.09 1.52 2.75 -27.88 -0.08 1.44 16 9 H 0.10 1.45 6.30 -51.93 -0.33 1.12 16 10 C -0.17 -2.31 9.11 37.16 0.34 -1.97 16 11 O -0.24 -5.64 7.41 -48.85 -0.36 -6.00 16 12 C 0.15 3.19 6.62 -38.61 -0.26 2.93 16 13 C -0.23 -3.89 8.24 -39.48 -0.33 -4.22 16 14 C -0.09 -1.43 10.04 -39.47 -0.40 -1.83 16 15 C -0.17 -2.83 10.02 -39.61 -0.40 -3.23 16 16 C -0.06 -1.18 9.43 -39.18 -0.37 -1.55 16 17 C -0.13 -3.14 5.90 -104.69 -0.62 -3.75 16 18 C 0.39 11.43 6.90 -34.42 -0.24 11.19 16 19 O -0.51 -17.06 13.74 -16.74 -0.23 -17.29 16 20 C -0.52 -14.81 8.83 -37.43 -0.33 -15.14 16 21 H 0.07 1.82 6.07 -52.49 -0.32 1.51 16 22 C 0.08 2.23 5.49 -17.32 -0.10 2.14 16 23 N -0.74 -22.15 11.76 55.57 0.65 -21.50 16 24 Si 0.90 19.87 29.57 -169.99 -5.03 14.85 16 25 H -0.27 -5.83 7.11 56.52 0.40 -5.43 16 26 H -0.28 -5.97 7.11 56.52 0.40 -5.57 16 27 H -0.26 -5.52 7.11 56.52 0.40 -5.11 16 28 H 0.06 0.33 8.14 -51.93 -0.42 -0.09 16 29 H 0.06 0.32 8.14 -51.93 -0.42 -0.10 16 30 H 0.06 0.33 8.14 -51.93 -0.42 -0.09 16 31 H 0.07 0.50 8.14 -51.93 -0.42 0.07 16 32 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16 33 H 0.07 0.61 8.14 -51.93 -0.42 0.18 16 34 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16 35 H 0.07 0.90 8.13 -51.93 -0.42 0.47 16 36 H 0.07 0.88 8.13 -51.93 -0.42 0.46 16 37 H 0.08 0.84 8.11 -51.93 -0.42 0.42 16 38 H 0.08 1.00 6.94 -51.93 -0.36 0.64 16 39 H 0.07 1.10 8.14 -51.93 -0.42 0.68 16 40 H 0.12 1.64 5.44 -52.48 -0.29 1.36 16 41 H 0.11 1.36 8.06 -52.49 -0.42 0.93 16 42 H 0.12 1.54 8.06 -52.49 -0.42 1.11 16 43 H 0.14 2.64 6.23 -52.49 -0.33 2.31 16 44 H 0.27 7.37 8.29 -40.82 -0.34 7.03 16 LS Contribution 372.63 15.07 5.62 5.62 Total: -1.00 -37.37 372.63 -8.64 -46.02 By element: Atomic # 1 Polarization: 8.40 SS G_CDS: -6.25 Total: 2.15 kcal Atomic # 6 Polarization: -5.00 SS G_CDS: -2.24 Total: -7.24 kcal Atomic # 7 Polarization: -22.15 SS G_CDS: 0.65 Total: -21.50 kcal Atomic # 8 Polarization: -38.49 SS G_CDS: -1.40 Total: -39.90 kcal Atomic # 14 Polarization: 19.87 SS G_CDS: -5.03 Total: 14.85 kcal Total LS contribution 5.62 Total: 5.62 kcal Total: -37.37 -8.64 -46.02 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001233525382.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -99.475 kcal (2) G-P(sol) polarization free energy of solvation -37.374 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -136.849 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.641 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.015 kcal (6) G-S(sol) free energy of system = (1) + (5) -145.490 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds