Wall clock time and date at job start Tue Mar 31 2020 12:26:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.53003 * 109.50360 * 2 1 4 4 O 1.43366 * 109.63458 * 120.31440 * 2 1 3 5 5 C 1.44194 * 107.28863 * 119.21228 * 4 2 1 6 6 C 1.54915 * 103.07481 * 338.56563 * 5 4 2 7 7 H 1.09002 * 110.97325 * 277.41663 * 6 5 4 8 8 C 1.52997 * 110.97515 * 153.67083 * 6 5 4 9 9 C 1.53002 * 109.46737 * 174.99858 * 8 6 5 10 10 O 1.42906 * 109.47044 * 179.97438 * 9 8 6 11 11 C 1.35638 * 116.99886 * 179.97438 * 10 9 8 12 12 C 1.38668 * 120.15923 * 359.72977 * 11 10 9 13 13 C 1.38095 * 120.08398 * 179.69980 * 12 11 10 14 14 C 1.38684 * 120.41931 * 0.59722 * 13 12 11 15 15 C 1.37704 * 120.32295 * 359.67960 * 14 13 12 16 16 C 1.39840 * 119.89732 * 0.02562 * 15 14 13 17 17 C 1.47533 * 120.20529 * 179.97438 * 16 15 14 18 18 O 1.21812 * 120.00176 * 180.02562 * 17 16 15 19 19 C 1.41832 * 120.00107 * 0.02562 * 17 16 15 20 20 H 1.08005 * 119.99358 * 353.21263 * 19 17 16 21 21 C 1.40326 * 120.00414 * 173.21029 * 19 17 16 22 22 N 1.30540 * 119.99472 * 6.10415 * 21 19 17 23 23 Si 1.86800 * 120.00107 * 186.10330 * 21 19 17 24 24 H 1.48501 * 109.47020 * 94.98421 * 23 21 19 25 25 H 1.48494 * 109.47126 * 214.98921 * 23 21 19 26 26 H 1.48504 * 109.46890 * 334.98966 * 23 21 19 27 27 O 1.43744 * 109.63147 * 239.68426 * 2 1 3 28 28 H 1.08999 * 109.46756 * 301.13755 * 1 2 3 29 29 H 1.08991 * 109.47234 * 61.13782 * 1 2 3 30 30 H 1.09003 * 109.46712 * 181.13980 * 1 2 3 31 31 H 1.09003 * 109.47174 * 178.86763 * 3 2 1 32 32 H 1.09003 * 109.47347 * 298.85960 * 3 2 1 33 33 H 1.09000 * 109.47735 * 58.86436 * 3 2 1 34 34 H 1.08995 * 110.69034 * 220.16887 * 5 4 2 35 35 H 1.08992 * 110.84051 * 97.03181 * 5 4 2 36 36 H 1.09002 * 109.47155 * 294.99778 * 8 6 5 37 37 H 1.08994 * 109.47159 * 55.00424 * 8 6 5 38 38 H 1.09002 * 109.47232 * 299.99872 * 9 8 6 39 39 H 1.08999 * 109.47626 * 60.00010 * 9 8 6 40 40 H 1.07997 * 119.95510 * 359.97438 * 12 11 10 41 41 H 1.08005 * 119.78875 * 180.31934 * 13 12 11 42 42 H 1.08000 * 119.83956 * 179.69876 * 14 13 12 43 43 H 1.08000 * 120.04888 * 180.02562 * 15 14 13 44 44 H 0.96999 * 119.99351 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0409 1.4422 0.0000 4 8 2.0118 -0.6816 1.1657 5 6 2.7886 -1.8087 0.7126 6 6 2.2654 -2.0390 -0.7272 7 1 1.3462 -2.6249 -0.7192 8 6 3.3312 -2.7089 -1.5966 9 6 2.7393 -3.0328 -2.9699 10 8 3.7350 -3.6581 -3.7823 11 6 3.3702 -4.0124 -5.0397 12 6 2.0795 -3.7703 -5.4851 13 6 1.7117 -4.1260 -6.7677 14 6 2.6229 -4.7379 -7.6154 15 6 3.9075 -4.9915 -7.1889 16 6 4.2961 -4.6313 -5.8947 17 6 5.6704 -4.9003 -5.4305 18 8 6.0049 -4.5854 -4.3024 19 6 6.6023 -5.5256 -6.2979 20 1 6.2783 -5.9036 -7.2564 21 6 7.9451 -5.6530 -5.9108 22 7 8.3132 -5.3054 -4.7076 23 14 9.2056 -6.3202 -7.1172 24 1 9.8798 -5.1895 -7.8045 25 1 10.2144 -7.1262 -6.3839 26 1 8.5245 -7.1751 -8.1225 27 8 2.0130 -0.6834 -1.1687 28 1 -0.3633 0.5314 0.8796 29 1 -0.3633 0.4960 -0.8999 30 1 -0.3633 -1.0275 0.0204 31 1 3.1307 1.4417 0.0203 32 1 1.6946 1.9504 -0.9000 33 1 1.6613 1.9622 0.8796 34 1 2.5990 -2.6826 1.3358 35 1 3.8516 -1.5680 0.7023 36 1 4.1791 -2.0345 -1.7163 37 1 3.6641 -3.6299 -1.1182 38 1 1.8914 -3.7073 -2.8502 39 1 2.4062 -2.1119 -3.4484 40 1 1.3624 -3.2989 -4.8294 41 1 0.7066 -3.9305 -7.1113 42 1 2.3238 -5.0165 -8.6150 43 1 4.6136 -5.4678 -7.8528 44 1 9.2413 -5.3939 -4.4399 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001233525763.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:26:42 Heat of formation + Delta-G solvation = -147.876958 kcal Electronic energy + Delta-G solvation = -26750.001337 eV Core-core repulsion = 22825.805956 eV Total energy + Delta-G solvation = -3924.195381 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 320.150 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -40.82289 -39.48251 -37.07011 -35.96477 -35.32284 -34.05994 -32.59782 -31.54578 -30.52915 -29.16167 -27.79794 -27.58576 -26.59942 -23.95875 -22.84285 -21.69552 -21.35281 -20.90997 -19.62330 -17.74490 -17.44645 -16.52503 -16.44817 -15.72018 -15.54979 -15.30616 -15.14704 -14.79244 -14.46992 -14.08138 -13.80633 -13.59299 -13.25821 -13.22416 -12.90937 -12.81116 -12.62133 -12.44523 -12.38121 -12.30759 -11.95428 -11.79190 -11.53732 -11.36462 -11.31507 -11.27655 -10.98984 -10.86479 -10.47263 -10.33409 -10.28121 -10.22419 -10.05459 -9.85542 -8.91911 -8.18503 -7.41842 -7.32586 -6.22102 -4.80597 1.83143 2.10043 3.08190 3.14383 3.16066 3.19307 3.61059 3.72604 4.05055 4.11212 4.41361 4.57286 4.61540 4.68761 4.75081 4.93967 5.01498 5.14580 5.23480 5.31190 5.34296 5.39317 5.44833 5.45023 5.46588 5.55978 5.57576 5.68174 5.70909 5.82771 5.88324 5.93349 5.95090 6.06892 6.16361 6.23122 6.38352 6.72108 6.92602 6.94632 6.97470 7.18627 7.32580 7.50850 8.10562 8.15479 8.87232 8.92440 10.40249 10.63606 Molecular weight = 320.15amu Principal moments of inertia in cm(-1) A = 0.015396 B = 0.003022 C = 0.002619 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1818.218271 B = 9264.268649 C =10689.710667 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C 0.248 3.752 3 C -0.154 4.154 4 O -0.381 6.381 5 C 0.027 3.973 6 C 0.052 3.948 7 H 0.086 0.914 8 C -0.109 4.109 9 C 0.058 3.942 10 O -0.269 6.269 11 C 0.151 3.849 12 C -0.228 4.228 13 C -0.093 4.093 14 C -0.176 4.176 15 C -0.059 4.059 16 C -0.137 4.137 17 C 0.392 3.608 18 O -0.519 6.519 19 C -0.522 4.522 20 H 0.072 0.928 21 C 0.081 3.919 22 N -0.738 5.738 23 Si 0.904 3.096 24 H -0.270 1.270 25 H -0.277 1.277 26 H -0.262 1.262 27 O -0.366 6.366 28 H 0.073 0.927 29 H 0.075 0.925 30 H 0.062 0.938 31 H 0.068 0.932 32 H 0.074 0.926 33 H 0.075 0.925 34 H 0.102 0.898 35 H 0.082 0.918 36 H 0.090 0.910 37 H 0.096 0.904 38 H 0.053 0.947 39 H 0.060 0.940 40 H 0.118 0.882 41 H 0.113 0.887 42 H 0.114 0.886 43 H 0.135 0.865 44 H 0.272 0.728 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.803 7.295 6.214 16.803 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.228 4.228 2 C 0.171 3.829 3 C -0.212 4.212 4 O -0.303 6.303 5 C -0.049 4.049 6 C -0.005 4.005 7 H 0.104 0.896 8 C -0.147 4.147 9 C -0.018 4.018 10 O -0.181 6.181 11 C 0.104 3.896 12 C -0.247 4.247 13 C -0.111 4.111 14 C -0.194 4.194 15 C -0.077 4.077 16 C -0.138 4.138 17 C 0.285 3.715 18 O -0.406 6.406 19 C -0.554 4.554 20 H 0.090 0.910 21 C -0.142 4.142 22 N -0.367 5.367 23 Si 0.728 3.272 24 H -0.195 1.195 25 H -0.202 1.202 26 H -0.186 1.186 27 O -0.287 6.287 28 H 0.091 0.909 29 H 0.094 0.906 30 H 0.081 0.919 31 H 0.087 0.913 32 H 0.093 0.907 33 H 0.093 0.907 34 H 0.120 0.880 35 H 0.100 0.900 36 H 0.109 0.891 37 H 0.114 0.886 38 H 0.071 0.929 39 H 0.078 0.922 40 H 0.135 0.865 41 H 0.131 0.869 42 H 0.132 0.868 43 H 0.152 0.848 44 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -13.369 7.627 7.033 16.923 hybrid contribution 0.144 -0.388 -0.849 0.945 sum -13.225 7.239 6.184 16.295 Atomic orbital electron populations 1.22373 0.93944 1.03241 1.03214 1.23366 0.92864 0.91574 0.75080 1.22071 1.02696 0.93377 1.03026 1.88868 1.69602 1.42172 1.29628 1.24208 0.96965 0.89531 0.94222 1.23893 0.98808 0.84470 0.93337 0.89612 1.21448 0.97685 1.01932 0.93608 1.22618 0.91071 0.96910 0.91184 1.86424 1.36993 1.73165 1.21514 1.19389 0.92100 0.93680 0.84421 1.21086 0.95816 1.09407 0.98411 1.20808 0.98743 0.98301 0.93270 1.20948 0.94505 1.04185 0.99809 1.21403 0.95281 0.96264 0.94766 1.21549 0.98961 1.00214 0.93118 1.17990 0.83448 0.81638 0.88398 1.90536 1.78368 1.51280 1.20439 1.20898 0.93851 1.36446 1.04187 0.90965 1.25955 0.99501 0.93682 0.95018 1.69976 1.17544 1.32103 1.17117 0.86404 0.80261 0.79486 0.81036 1.19546 1.20245 1.18553 1.89321 1.85867 1.21801 1.31684 0.90850 0.90580 0.91885 0.91314 0.90669 0.90659 0.88018 0.89980 0.89144 0.88570 0.92904 0.92153 0.86454 0.86937 0.86767 0.84756 0.91691 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.53 9.19 37.16 0.34 -1.19 16 2 C 0.25 2.76 1.47 -26.73 -0.04 2.72 16 3 C -0.15 -1.49 9.24 37.16 0.34 -1.14 16 4 O -0.38 -4.53 10.87 -59.04 -0.64 -5.17 16 5 C 0.03 0.29 7.54 38.17 0.29 0.58 16 6 C 0.05 0.61 3.43 -25.72 -0.09 0.52 16 7 H 0.09 0.87 8.14 -51.93 -0.42 0.45 16 8 C -0.11 -1.55 5.36 -26.73 -0.14 -1.69 16 9 C 0.06 0.95 4.71 37.16 0.17 1.12 16 10 O -0.27 -6.05 8.22 -40.45 -0.33 -6.38 16 11 C 0.15 3.35 6.71 -38.61 -0.26 3.09 16 12 C -0.23 -4.12 9.03 -39.48 -0.36 -4.48 16 13 C -0.09 -1.52 10.03 -39.47 -0.40 -1.92 16 14 C -0.18 -3.02 10.02 -39.61 -0.40 -3.42 16 15 C -0.06 -1.21 9.43 -39.18 -0.37 -1.58 16 16 C -0.14 -3.33 5.90 -104.69 -0.62 -3.95 16 17 C 0.39 11.35 6.90 -34.42 -0.24 11.11 16 18 O -0.52 -16.70 13.74 -16.75 -0.23 -16.93 16 19 C -0.52 -14.54 8.83 -37.42 -0.33 -14.87 16 20 H 0.07 1.82 6.07 -52.48 -0.32 1.50 16 21 C 0.08 2.20 5.49 -17.32 -0.10 2.11 16 22 N -0.74 -21.47 11.76 55.57 0.65 -20.81 16 23 Si 0.90 19.48 29.57 -169.99 -5.03 14.45 16 24 H -0.27 -5.72 7.11 56.52 0.40 -5.31 16 25 H -0.28 -5.83 7.11 56.52 0.40 -5.43 16 26 H -0.26 -5.43 7.11 56.52 0.40 -5.03 16 27 O -0.37 -4.77 10.69 -59.04 -0.63 -5.40 16 28 H 0.07 0.57 8.14 -51.93 -0.42 0.15 16 29 H 0.08 0.63 8.14 -51.93 -0.42 0.20 16 30 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 31 H 0.07 0.71 8.14 -51.93 -0.42 0.28 16 32 H 0.07 0.66 8.14 -51.93 -0.42 0.24 16 33 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16 34 H 0.10 0.86 8.14 -51.93 -0.42 0.44 16 35 H 0.08 0.87 8.03 -51.93 -0.42 0.45 16 36 H 0.09 1.42 8.14 -51.93 -0.42 0.99 16 37 H 0.10 1.32 8.14 -51.93 -0.42 0.90 16 38 H 0.05 0.75 7.65 -51.93 -0.40 0.36 16 39 H 0.06 0.95 7.67 -51.93 -0.40 0.56 16 40 H 0.12 1.80 6.30 -52.49 -0.33 1.47 16 41 H 0.11 1.45 8.06 -52.48 -0.42 1.03 16 42 H 0.11 1.59 8.06 -52.49 -0.42 1.17 16 43 H 0.13 2.63 6.22 -52.49 -0.33 2.30 16 44 H 0.27 7.10 8.29 -40.82 -0.34 6.76 16 LS Contribution 367.22 15.07 5.53 5.53 Total: -1.00 -34.64 367.22 -9.25 -43.89 By element: Atomic # 1 Polarization: 10.19 SS G_CDS: -6.40 Total: 3.80 kcal Atomic # 6 Polarization: -10.80 SS G_CDS: -2.18 Total: -12.98 kcal Atomic # 7 Polarization: -21.47 SS G_CDS: 0.65 Total: -20.81 kcal Atomic # 8 Polarization: -32.05 SS G_CDS: -1.83 Total: -33.88 kcal Atomic # 14 Polarization: 19.48 SS G_CDS: -5.03 Total: 14.45 kcal Total LS contribution 5.53 Total: 5.53 kcal Total: -34.64 -9.25 -43.89 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001233525763.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -103.984 kcal (2) G-P(sol) polarization free energy of solvation -34.642 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -138.626 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.251 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.893 kcal (6) G-S(sol) free energy of system = (1) + (5) -147.877 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds