Wall clock time and date at job start Tue Mar 31 2020 12:26:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.53003 * 109.50360 * 2 1 4 4 O 1.43366 * 109.63458 * 120.31440 * 2 1 3 5 5 C 1.44194 * 107.28863 * 119.21228 * 4 2 1 6 6 C 1.54915 * 103.07481 * 338.56563 * 5 4 2 7 7 H 1.09002 * 110.97325 * 277.41663 * 6 5 4 8 8 C 1.52997 * 110.97515 * 153.67083 * 6 5 4 9 9 C 1.53002 * 109.46737 * 174.99858 * 8 6 5 10 10 O 1.42906 * 109.47044 * 179.97438 * 9 8 6 11 11 C 1.35638 * 116.99886 * 179.97438 * 10 9 8 12 12 C 1.38668 * 120.15923 * 359.72977 * 11 10 9 13 13 C 1.38095 * 120.08398 * 179.69980 * 12 11 10 14 14 C 1.38684 * 120.41931 * 0.59722 * 13 12 11 15 15 C 1.37704 * 120.32295 * 359.67960 * 14 13 12 16 16 C 1.39840 * 119.89732 * 0.02562 * 15 14 13 17 17 C 1.47533 * 120.20529 * 179.97438 * 16 15 14 18 18 O 1.21812 * 120.00176 * 180.02562 * 17 16 15 19 19 C 1.41832 * 120.00107 * 0.02562 * 17 16 15 20 20 H 1.08005 * 119.99358 * 353.21263 * 19 17 16 21 21 C 1.40326 * 120.00414 * 173.21029 * 19 17 16 22 22 N 1.30540 * 119.99472 * 6.10415 * 21 19 17 23 23 Si 1.86800 * 120.00107 * 186.10330 * 21 19 17 24 24 H 1.48501 * 109.47020 * 94.98421 * 23 21 19 25 25 H 1.48494 * 109.47126 * 214.98921 * 23 21 19 26 26 H 1.48504 * 109.46890 * 334.98966 * 23 21 19 27 27 O 1.43744 * 109.63147 * 239.68426 * 2 1 3 28 28 H 1.08999 * 109.46756 * 301.13755 * 1 2 3 29 29 H 1.08991 * 109.47234 * 61.13782 * 1 2 3 30 30 H 1.09003 * 109.46712 * 181.13980 * 1 2 3 31 31 H 1.09003 * 109.47174 * 178.86763 * 3 2 1 32 32 H 1.09003 * 109.47347 * 298.85960 * 3 2 1 33 33 H 1.09000 * 109.47735 * 58.86436 * 3 2 1 34 34 H 1.08995 * 110.69034 * 220.16887 * 5 4 2 35 35 H 1.08992 * 110.84051 * 97.03181 * 5 4 2 36 36 H 1.09002 * 109.47155 * 294.99778 * 8 6 5 37 37 H 1.08994 * 109.47159 * 55.00424 * 8 6 5 38 38 H 1.09002 * 109.47232 * 299.99872 * 9 8 6 39 39 H 1.08999 * 109.47626 * 60.00010 * 9 8 6 40 40 H 1.07997 * 119.95510 * 359.97438 * 12 11 10 41 41 H 1.08005 * 119.78875 * 180.31934 * 13 12 11 42 42 H 1.08000 * 119.83956 * 179.69876 * 14 13 12 43 43 H 1.08000 * 120.04888 * 180.02562 * 15 14 13 44 44 H 0.96999 * 119.99351 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0409 1.4422 0.0000 4 8 2.0118 -0.6816 1.1657 5 6 2.7886 -1.8087 0.7126 6 6 2.2654 -2.0390 -0.7272 7 1 1.3462 -2.6249 -0.7192 8 6 3.3312 -2.7089 -1.5966 9 6 2.7393 -3.0328 -2.9699 10 8 3.7350 -3.6581 -3.7823 11 6 3.3702 -4.0124 -5.0397 12 6 2.0795 -3.7703 -5.4851 13 6 1.7117 -4.1260 -6.7677 14 6 2.6229 -4.7379 -7.6154 15 6 3.9075 -4.9915 -7.1889 16 6 4.2961 -4.6313 -5.8947 17 6 5.6704 -4.9003 -5.4305 18 8 6.0049 -4.5854 -4.3024 19 6 6.6023 -5.5256 -6.2979 20 1 6.2783 -5.9036 -7.2564 21 6 7.9451 -5.6530 -5.9108 22 7 8.3132 -5.3054 -4.7076 23 14 9.2056 -6.3202 -7.1172 24 1 9.8798 -5.1895 -7.8045 25 1 10.2144 -7.1262 -6.3839 26 1 8.5245 -7.1751 -8.1225 27 8 2.0130 -0.6834 -1.1687 28 1 -0.3633 0.5314 0.8796 29 1 -0.3633 0.4960 -0.8999 30 1 -0.3633 -1.0275 0.0204 31 1 3.1307 1.4417 0.0203 32 1 1.6946 1.9504 -0.9000 33 1 1.6613 1.9622 0.8796 34 1 2.5990 -2.6826 1.3358 35 1 3.8516 -1.5680 0.7023 36 1 4.1791 -2.0345 -1.7163 37 1 3.6641 -3.6299 -1.1182 38 1 1.8914 -3.7073 -2.8502 39 1 2.4062 -2.1119 -3.4484 40 1 1.3624 -3.2989 -4.8294 41 1 0.7066 -3.9305 -7.1113 42 1 2.3238 -5.0165 -8.6150 43 1 4.6136 -5.4678 -7.8528 44 1 9.2413 -5.3939 -4.4399 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001233525763.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:26:41 Heat of formation + Delta-G solvation = -169.292545 kcal Electronic energy + Delta-G solvation = -26750.929986 eV Core-core repulsion = 22825.805956 eV Total energy + Delta-G solvation = -3925.124031 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 320.150 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -41.73164 -41.01211 -38.73577 -37.83934 -36.28892 -35.03034 -34.69314 -32.58574 -32.14645 -30.58393 -28.98793 -28.48407 -28.33472 -25.13396 -24.50308 -22.92151 -22.31341 -22.13581 -21.41218 -19.04053 -18.61772 -18.40983 -17.42798 -17.30293 -16.96395 -16.65973 -16.32136 -16.04236 -15.77095 -15.26648 -15.07473 -14.94439 -14.74453 -14.58605 -14.32480 -14.04127 -13.82284 -13.63340 -13.36154 -13.26351 -13.16102 -13.11770 -12.81864 -12.80664 -12.70715 -12.67872 -12.57264 -12.20417 -12.05793 -11.93801 -11.77068 -11.65153 -11.20622 -10.95990 -10.69750 -9.73506 -9.45376 -8.98809 -8.27645 -6.99295 0.26636 0.61127 1.37621 1.38858 1.55067 2.21905 2.22468 2.30306 2.34392 2.88404 2.92154 3.42050 3.71423 3.73338 3.79926 3.87941 3.90778 3.96433 4.01496 4.06841 4.13671 4.24447 4.33200 4.36734 4.54883 4.56700 4.57886 4.62031 4.64704 4.70433 4.75207 4.85015 4.86548 4.96587 5.04831 5.12551 5.17634 5.20507 5.24809 5.42010 5.54925 5.71396 5.97817 6.06195 6.08006 6.63779 6.75749 6.91033 8.34671 8.56697 Molecular weight = 320.15amu Principal moments of inertia in cm(-1) A = 0.015396 B = 0.003022 C = 0.002619 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1818.218271 B = 9264.268649 C =10689.710667 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C 0.236 3.764 3 C -0.155 4.155 4 O -0.391 6.391 5 C 0.026 3.974 6 C 0.060 3.940 7 H 0.108 0.892 8 C -0.104 4.104 9 C 0.055 3.945 10 O -0.313 6.313 11 C 0.129 3.871 12 C -0.224 4.224 13 C -0.072 4.072 14 C -0.168 4.168 15 C -0.063 4.063 16 C -0.194 4.194 17 C 0.367 3.633 18 O -0.573 6.573 19 C -0.551 4.551 20 H 0.092 0.908 21 C 0.023 3.977 22 N -0.792 5.792 23 Si 0.994 3.006 24 H -0.261 1.261 25 H -0.269 1.269 26 H -0.244 1.244 27 O -0.387 6.387 28 H 0.086 0.914 29 H 0.083 0.917 30 H 0.064 0.936 31 H 0.053 0.947 32 H 0.082 0.918 33 H 0.091 0.909 34 H 0.126 0.874 35 H 0.073 0.927 36 H 0.063 0.937 37 H 0.094 0.906 38 H 0.077 0.923 39 H 0.064 0.936 40 H 0.147 0.853 41 H 0.164 0.836 42 H 0.157 0.843 43 H 0.134 0.866 44 H 0.279 0.721 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.510 7.106 4.319 18.486 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.223 4.223 2 C 0.160 3.840 3 C -0.212 4.212 4 O -0.313 6.313 5 C -0.050 4.050 6 C 0.003 3.997 7 H 0.126 0.874 8 C -0.142 4.142 9 C -0.020 4.020 10 O -0.226 6.226 11 C 0.082 3.918 12 C -0.243 4.243 13 C -0.090 4.090 14 C -0.185 4.185 15 C -0.082 4.082 16 C -0.195 4.195 17 C 0.265 3.735 18 O -0.466 6.466 19 C -0.582 4.582 20 H 0.110 0.890 21 C -0.195 4.195 22 N -0.422 5.422 23 Si 0.813 3.187 24 H -0.186 1.186 25 H -0.193 1.193 26 H -0.167 1.167 27 O -0.309 6.309 28 H 0.105 0.895 29 H 0.102 0.898 30 H 0.083 0.917 31 H 0.073 0.927 32 H 0.101 0.899 33 H 0.110 0.890 34 H 0.144 0.856 35 H 0.092 0.908 36 H 0.082 0.918 37 H 0.113 0.887 38 H 0.095 0.905 39 H 0.082 0.918 40 H 0.165 0.835 41 H 0.182 0.818 42 H 0.175 0.825 43 H 0.152 0.848 44 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -16.107 7.441 5.123 18.468 hybrid contribution 0.856 -0.271 -0.257 0.934 sum -15.251 7.170 4.866 17.541 Atomic orbital electron populations 1.22354 0.92021 1.03695 1.04235 1.23717 0.94298 0.91747 0.74267 1.22115 1.01845 0.93058 1.04224 1.88853 1.69794 1.42511 1.30138 1.24285 0.96511 0.90168 0.94082 1.23847 0.98649 0.84218 0.92959 0.87391 1.21391 0.97819 1.01535 0.93436 1.22886 0.90900 0.97145 0.91061 1.86373 1.39967 1.73832 1.22396 1.19664 0.93543 0.94189 0.84392 1.21431 0.94294 1.08759 0.99813 1.21437 1.00620 0.95089 0.91840 1.21381 0.92710 1.02732 1.01716 1.21494 0.97216 0.96250 0.93214 1.21259 0.97666 1.04801 0.95821 1.18739 0.86039 0.80860 0.87905 1.90468 1.80184 1.53519 1.22392 1.21409 0.94841 1.36954 1.05008 0.89021 1.27247 1.01934 0.93256 0.97078 1.70135 1.18578 1.33537 1.19924 0.85062 0.76628 0.78996 0.78045 1.18603 1.19338 1.16698 1.89296 1.86258 1.22414 1.32917 0.89539 0.89818 0.91737 0.92735 0.89916 0.88983 0.85600 0.90826 0.91846 0.88728 0.90454 0.91786 0.83512 0.81836 0.82492 0.84805 0.91052 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.64 9.19 71.98 0.66 -1.98 16 2 C 0.24 5.03 1.47 30.60 0.04 5.08 16 3 C -0.16 -2.90 9.24 71.98 0.66 -2.23 16 4 O -0.39 -8.98 10.87 -126.22 -1.37 -10.35 16 5 C 0.03 0.54 7.54 72.64 0.55 1.09 16 6 C 0.06 1.38 3.43 31.25 0.11 1.49 16 7 H 0.11 2.01 8.14 -2.39 -0.02 1.99 16 8 C -0.10 -3.11 5.36 30.59 0.16 -2.94 16 9 C 0.06 1.83 4.71 71.98 0.34 2.17 16 10 O -0.31 -14.85 8.22 -68.64 -0.56 -15.41 16 11 C 0.13 5.86 6.71 22.90 0.15 6.01 16 12 C -0.22 -7.58 9.03 22.34 0.20 -7.38 16 13 C -0.07 -2.03 10.03 22.34 0.22 -1.80 16 14 C -0.17 -5.13 10.02 22.25 0.22 -4.91 16 15 C -0.06 -2.58 9.43 22.53 0.21 -2.37 16 16 C -0.19 -9.84 5.90 -19.91 -0.12 -9.96 16 17 C 0.37 22.70 6.90 25.61 0.18 22.88 16 18 O -0.57 -39.97 13.74 16.17 0.22 -39.75 16 19 C -0.55 -32.06 8.83 23.67 0.21 -31.85 16 20 H 0.09 4.74 6.07 -2.91 -0.02 4.72 16 21 C 0.02 1.28 5.49 85.39 0.47 1.75 16 22 N -0.79 -48.63 11.76 21.88 0.26 -48.37 16 23 Si 0.99 40.63 29.57 68.60 2.03 42.66 16 24 H -0.26 -10.23 7.11 99.48 0.71 -9.53 16 25 H -0.27 -10.50 7.11 99.48 0.71 -9.79 16 26 H -0.24 -9.18 7.11 99.48 0.71 -8.47 16 27 O -0.39 -9.98 10.69 -126.22 -1.35 -11.33 16 28 H 0.09 1.14 8.14 -2.39 -0.02 1.12 16 29 H 0.08 1.20 8.14 -2.39 -0.02 1.18 16 30 H 0.06 1.00 8.14 -2.39 -0.02 0.99 16 31 H 0.05 1.15 8.14 -2.39 -0.02 1.13 16 32 H 0.08 1.39 8.14 -2.39 -0.02 1.37 16 33 H 0.09 1.37 8.14 -2.39 -0.02 1.35 16 34 H 0.13 2.00 8.14 -2.39 -0.02 1.98 16 35 H 0.07 1.64 8.03 -2.39 -0.02 1.62 16 36 H 0.06 2.19 8.14 -2.39 -0.02 2.17 16 37 H 0.09 2.79 8.14 -2.39 -0.02 2.77 16 38 H 0.08 2.13 7.65 -2.39 -0.02 2.11 16 39 H 0.06 2.03 7.67 -2.39 -0.02 2.01 16 40 H 0.15 3.99 6.30 -2.91 -0.02 3.97 16 41 H 0.16 3.03 8.06 -2.91 -0.02 3.01 16 42 H 0.16 3.48 8.06 -2.91 -0.02 3.46 16 43 H 0.13 5.24 6.22 -2.91 -0.02 5.22 16 44 H 0.28 15.32 8.29 -92.71 -0.77 14.55 16 Total: -1.00 -83.10 367.22 4.51 -78.60 By element: Atomic # 1 Polarization: 27.94 SS G_CDS: 1.00 Total: 28.94 kcal Atomic # 6 Polarization: -29.26 SS G_CDS: 4.28 Total: -24.98 kcal Atomic # 7 Polarization: -48.63 SS G_CDS: 0.26 Total: -48.37 kcal Atomic # 8 Polarization: -73.79 SS G_CDS: -3.06 Total: -76.85 kcal Atomic # 14 Polarization: 40.63 SS G_CDS: 2.03 Total: 42.66 kcal Total: -83.10 4.51 -78.60 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001233525763.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -90.695 kcal (2) G-P(sol) polarization free energy of solvation -83.104 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -173.799 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.507 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.597 kcal (6) G-S(sol) free energy of system = (1) + (5) -169.293 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds