Wall clock time and date at job start Tue Mar 31 2020 12:45:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.53000 * 109.47166 * 2 1 4 4 C 1.53008 * 109.46917 * 179.97438 * 3 2 1 5 5 H 1.08997 * 109.46740 * 55.00506 * 4 3 2 6 6 O 1.42890 * 109.47210 * 295.00029 * 4 3 2 7 7 C 1.35664 * 117.00041 * 93.76686 * 6 4 3 8 8 C 1.39160 * 119.90566 * 182.42167 * 7 6 4 9 9 C 1.37597 * 120.09236 * 179.75804 * 8 7 6 10 10 C 1.39948 * 119.90657 * 0.51659 * 9 8 7 11 11 C 1.47565 * 120.09763 * 179.72146 * 10 9 8 12 12 O 1.21817 * 120.00306 * 180.02562 * 11 10 9 13 13 C 1.41766 * 119.99648 * 0.02562 * 11 10 9 14 14 H 1.08001 * 120.00472 * 0.02562 * 13 11 10 15 15 C 1.40351 * 119.99603 * 180.02562 * 13 11 10 16 16 N 1.30526 * 120.00247 * 359.97438 * 15 13 11 17 17 Si 1.86804 * 119.99553 * 180.02562 * 15 13 11 18 18 H 1.48502 * 109.46869 * 60.00079 * 17 15 13 19 19 H 1.48501 * 109.46601 * 179.97438 * 17 15 13 20 20 H 1.48499 * 109.47262 * 299.99634 * 17 15 13 21 21 C 1.39946 * 119.81047 * 359.73683 * 10 9 8 22 22 C 1.37592 * 119.90759 * 0.02562 * 21 10 9 23 23 C 1.50697 * 109.47019 * 174.99815 * 4 3 2 24 24 O 1.20825 * 119.99842 * 120.00301 * 23 4 3 25 25 O 1.34226 * 120.00236 * 299.73151 * 23 4 3 26 26 C 1.45206 * 117.00370 * 180.27696 * 25 23 4 27 27 C 1.52994 * 109.47241 * 179.97438 * 26 25 23 28 28 H 1.08994 * 109.47478 * 180.02562 * 1 2 3 29 29 H 1.09000 * 109.47158 * 300.00151 * 1 2 3 30 30 H 1.09008 * 109.46965 * 59.99975 * 1 2 3 31 31 H 1.09000 * 109.47158 * 239.99849 * 2 1 3 32 32 H 1.09000 * 109.47089 * 119.99723 * 2 1 3 33 33 H 1.08993 * 109.47405 * 60.00172 * 3 2 1 34 34 H 1.08994 * 109.47313 * 299.99895 * 3 2 1 35 35 H 1.07999 * 119.95372 * 359.97438 * 8 7 6 36 36 H 1.08002 * 120.04458 * 180.25249 * 9 8 7 37 37 H 0.96998 * 119.99876 * 179.97438 * 16 15 13 38 38 H 1.08001 * 120.04970 * 180.02562 * 21 10 9 39 39 H 1.08007 * 119.95578 * 179.97438 * 22 21 10 40 40 H 1.09005 * 109.46653 * 299.99704 * 26 25 23 41 41 H 1.08999 * 109.47328 * 59.99229 * 26 25 23 42 42 H 1.08999 * 109.47375 * 59.99521 * 27 26 25 43 43 H 1.09000 * 109.46870 * 179.97438 * 27 26 25 44 44 H 1.08998 * 109.47386 * 299.99933 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 3.5700 1.4424 0.0006 5 1 3.9336 0.8529 -0.8410 6 8 4.0458 0.8732 1.2219 7 6 4.3259 -0.4541 1.2147 8 6 4.7448 -1.0811 2.3843 9 6 5.0252 -2.4282 2.3826 10 6 4.8990 -3.1657 1.1999 11 6 5.2045 -4.6094 1.1919 12 8 5.0944 -5.2496 0.1613 13 6 5.6260 -5.2513 2.3835 14 1 5.7232 -4.6839 3.2973 15 6 5.9171 -6.6243 2.3757 16 7 5.7992 -7.3102 1.2715 17 14 6.4718 -7.4702 3.9461 18 1 5.4163 -7.3330 4.9817 19 1 6.7134 -8.9099 3.6739 20 1 7.7261 -6.8404 4.4312 21 6 4.4825 -2.5301 0.0248 22 6 4.1994 -1.1836 0.0364 23 6 4.0724 2.8578 -0.1232 24 8 4.7668 3.3305 0.7453 25 8 3.7531 3.5914 -1.2009 26 6 4.2772 4.9445 -1.2563 27 6 3.8114 5.6194 -2.5478 28 1 -0.3634 -1.0276 0.0005 29 1 -0.3633 0.5139 0.8900 30 1 -0.3633 0.5139 -0.8901 31 1 1.8933 -0.5139 -0.8900 32 1 1.8933 -0.5138 0.8900 33 1 1.6767 1.9563 0.8899 34 1 1.6767 1.9563 -0.8899 35 1 4.8467 -0.5103 3.2955 36 1 5.3463 -2.9149 3.2917 37 1 6.0007 -8.2590 1.2661 38 1 4.3834 -3.0956 -0.8900 39 1 3.8784 -0.6922 -0.8702 40 1 3.9134 5.5103 -0.3985 41 1 5.3665 4.9134 -1.2354 42 1 2.7220 5.6505 -2.5691 43 1 4.2044 6.6353 -2.5891 44 1 4.1754 5.0535 -3.4053 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001233527319.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:45:31 Heat of formation + Delta-G solvation = -147.927767 kcal Electronic energy + Delta-G solvation = -26555.289464 eV Core-core repulsion = 22631.091880 eV Total energy + Delta-G solvation = -3924.197585 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 320.150 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -41.07562 -39.82794 -37.77633 -36.76104 -35.82229 -34.85526 -32.71218 -32.20461 -30.71009 -30.49514 -29.09560 -26.68079 -25.48818 -23.66569 -22.59307 -22.57053 -21.42309 -20.57918 -19.61336 -18.49844 -17.64277 -17.02265 -16.86093 -16.43007 -15.74229 -15.54749 -15.33860 -14.60986 -14.29896 -14.23632 -13.86857 -13.76523 -13.35129 -13.19097 -13.13359 -12.89385 -12.66493 -12.55446 -12.27559 -12.23251 -12.08541 -11.81624 -11.77450 -11.53913 -11.35297 -11.21001 -11.07976 -10.89884 -10.86327 -10.63404 -10.44392 -10.34274 -10.23871 -9.94468 -8.98597 -8.46739 -7.52759 -7.50805 -6.32641 -4.92864 1.75311 1.90256 1.95766 2.01253 3.06109 3.11695 3.13642 3.45215 3.97757 3.99225 4.22358 4.47847 4.51083 4.57173 4.61097 4.63528 4.89723 4.93062 4.98725 5.26145 5.26859 5.34585 5.35791 5.39324 5.44855 5.58388 5.64423 5.68581 5.78990 5.83430 5.96479 6.03379 6.08681 6.09264 6.11094 6.22489 6.25905 6.58316 6.77139 6.99191 7.19832 7.23822 7.33278 7.49776 7.72798 8.00844 8.76864 8.81630 10.28864 10.50802 Molecular weight = 320.15amu Principal moments of inertia in cm(-1) A = 0.021773 B = 0.002632 C = 0.002541 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1285.715589 B =10637.702653 C =11018.396460 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.131 4.131 3 C -0.130 4.130 4 C 0.092 3.908 5 H 0.117 0.883 6 O -0.289 6.289 7 C 0.109 3.891 8 C -0.158 4.158 9 C -0.056 4.056 10 C -0.132 4.132 11 C 0.388 3.612 12 O -0.544 6.544 13 C -0.517 4.517 14 H 0.074 0.926 15 C 0.079 3.921 16 N -0.735 5.735 17 Si 0.906 3.094 18 H -0.264 1.264 19 H -0.278 1.278 20 H -0.264 1.264 21 C -0.054 4.054 22 C -0.220 4.220 23 C 0.464 3.536 24 O -0.485 6.485 25 O -0.354 6.354 26 C 0.061 3.939 27 C -0.152 4.152 28 H 0.059 0.941 29 H 0.053 0.947 30 H 0.052 0.948 31 H 0.070 0.930 32 H 0.075 0.925 33 H 0.078 0.922 34 H 0.089 0.911 35 H 0.124 0.876 36 H 0.138 0.862 37 H 0.275 0.725 38 H 0.129 0.871 39 H 0.123 0.877 40 H 0.071 0.929 41 H 0.071 0.929 42 H 0.067 0.933 43 H 0.080 0.920 44 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.997 20.221 -4.233 21.813 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.168 4.168 3 C -0.168 4.168 4 C 0.034 3.966 5 H 0.134 0.866 6 O -0.203 6.203 7 C 0.065 3.935 8 C -0.176 4.176 9 C -0.074 4.074 10 C -0.133 4.133 11 C 0.284 3.716 12 O -0.434 6.434 13 C -0.548 4.548 14 H 0.092 0.908 15 C -0.144 4.144 16 N -0.363 5.363 17 Si 0.730 3.270 18 H -0.189 1.189 19 H -0.203 1.203 20 H -0.189 1.189 21 C -0.073 4.073 22 C -0.239 4.239 23 C 0.305 3.695 24 O -0.370 6.370 25 O -0.272 6.272 26 C -0.012 4.012 27 C -0.209 4.209 28 H 0.078 0.922 29 H 0.072 0.928 30 H 0.072 0.928 31 H 0.088 0.912 32 H 0.094 0.906 33 H 0.097 0.903 34 H 0.107 0.893 35 H 0.142 0.858 36 H 0.155 0.845 37 H 0.086 0.914 38 H 0.146 0.854 39 H 0.140 0.860 40 H 0.089 0.911 41 H 0.090 0.910 42 H 0.086 0.914 43 H 0.099 0.901 44 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -6.813 20.104 -4.438 21.686 hybrid contribution 0.412 -0.141 0.762 0.878 sum -6.401 19.964 -3.675 21.284 Atomic orbital electron populations 1.21733 0.95319 1.02089 1.01493 1.21740 0.96410 0.95061 1.03630 1.22092 0.90992 0.99611 1.04103 1.21748 0.95889 0.88664 0.90310 0.86561 1.86056 1.80721 1.21638 1.31905 1.19084 0.98198 0.81234 0.94955 1.20339 1.06242 0.94941 0.96121 1.21410 0.95502 0.91671 0.98853 1.21849 0.99162 0.99959 0.92371 1.18053 0.80044 0.83652 0.89802 1.90502 1.52461 1.65736 1.34704 1.20914 1.42190 0.94051 0.97611 0.90786 1.26008 0.93507 0.97812 0.97069 1.69945 1.31091 1.08187 1.27116 0.86436 0.80094 0.78336 0.82137 1.18856 1.20279 1.18858 1.21157 0.94627 0.92576 0.98905 1.21107 1.10150 0.95896 0.96709 1.23338 0.78105 0.88351 0.79704 1.90701 1.34274 1.71903 1.40122 1.86467 1.70086 1.27397 1.43249 1.23083 0.99286 0.79022 0.99822 1.21811 1.02780 1.00247 0.96086 0.92239 0.92816 0.92843 0.91155 0.90588 0.90340 0.89266 0.85804 0.84468 0.91421 0.85353 0.85980 0.91055 0.91033 0.91368 0.90102 0.91308 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.42 9.91 37.15 0.37 -1.05 16 2 C -0.13 -1.45 4.47 -26.73 -0.12 -1.57 16 3 C -0.13 -1.33 4.89 -26.73 -0.13 -1.46 16 4 C 0.09 1.15 2.69 -27.88 -0.07 1.07 16 5 H 0.12 1.32 5.36 -51.93 -0.28 1.05 16 6 O -0.29 -4.57 9.19 -38.65 -0.36 -4.92 16 7 C 0.11 1.85 5.33 -38.89 -0.21 1.64 16 8 C -0.16 -2.79 9.97 -39.47 -0.39 -3.18 16 9 C -0.06 -1.12 9.43 -39.18 -0.37 -1.49 16 10 C -0.13 -3.03 5.89 -104.81 -0.62 -3.65 16 11 C 0.39 10.83 6.91 -34.43 -0.24 10.59 16 12 O -0.54 -17.06 14.89 5.08 0.08 -16.99 16 13 C -0.52 -13.97 8.86 -37.44 -0.33 -14.30 16 14 H 0.07 1.80 6.01 -52.49 -0.32 1.48 16 15 C 0.08 2.11 5.50 -17.31 -0.10 2.02 16 16 N -0.73 -20.94 11.73 55.57 0.65 -20.29 16 17 Si 0.91 19.06 29.56 -169.99 -5.03 14.03 16 18 H -0.26 -5.40 7.11 56.52 0.40 -5.00 16 19 H -0.28 -5.70 7.11 56.52 0.40 -5.30 16 20 H -0.26 -5.42 7.11 56.52 0.40 -5.02 16 21 C -0.05 -1.10 9.59 -39.18 -0.38 -1.48 16 22 C -0.22 -3.67 7.11 -39.47 -0.28 -3.95 16 23 C 0.46 6.05 7.33 36.00 0.26 6.31 16 24 O -0.48 -7.87 16.25 -25.48 -0.41 -8.28 16 25 O -0.35 -3.75 10.04 -39.25 -0.39 -4.14 16 26 C 0.06 0.51 6.19 37.15 0.23 0.74 16 27 C -0.15 -0.82 10.29 37.15 0.38 -0.44 16 28 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 29 H 0.05 0.49 8.14 -51.93 -0.42 0.06 16 30 H 0.05 0.43 8.14 -51.92 -0.42 0.01 16 31 H 0.07 0.76 6.79 -51.93 -0.35 0.41 16 32 H 0.08 1.03 6.25 -51.93 -0.32 0.70 16 33 H 0.08 0.82 8.14 -51.93 -0.42 0.39 16 34 H 0.09 0.74 8.00 -51.93 -0.42 0.32 16 35 H 0.12 1.94 8.06 -52.49 -0.42 1.52 16 36 H 0.14 2.60 6.19 -52.49 -0.33 2.28 16 37 H 0.27 7.03 8.29 -40.82 -0.34 6.69 16 38 H 0.13 2.66 7.65 -52.49 -0.40 2.26 16 39 H 0.12 1.65 4.53 -52.48 -0.24 1.41 16 40 H 0.07 0.58 8.13 -51.93 -0.42 0.15 16 41 H 0.07 0.60 8.13 -51.93 -0.42 0.18 16 42 H 0.07 0.35 8.14 -51.93 -0.42 -0.07 16 43 H 0.08 0.30 8.14 -51.93 -0.42 -0.12 16 44 H 0.07 0.37 8.14 -51.93 -0.42 -0.05 16 LS Contribution 367.70 15.07 5.54 5.54 Total: -1.00 -33.80 367.70 -7.92 -41.72 By element: Atomic # 1 Polarization: 9.54 SS G_CDS: -6.01 Total: 3.52 kcal Atomic # 6 Polarization: -8.20 SS G_CDS: -1.99 Total: -10.19 kcal Atomic # 7 Polarization: -20.94 SS G_CDS: 0.65 Total: -20.29 kcal Atomic # 8 Polarization: -33.25 SS G_CDS: -1.09 Total: -34.33 kcal Atomic # 14 Polarization: 19.06 SS G_CDS: -5.03 Total: 14.03 kcal Total LS contribution 5.54 Total: 5.54 kcal Total: -33.80 -7.92 -41.72 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001233527319.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -106.212 kcal (2) G-P(sol) polarization free energy of solvation -33.796 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -140.008 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.919 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.715 kcal (6) G-S(sol) free energy of system = (1) + (5) -147.928 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds