Wall clock time and date at job start Tue Mar 31 2020 12:45:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.53000 * 109.47166 * 2 1 4 4 C 1.53008 * 109.46917 * 179.97438 * 3 2 1 5 5 H 1.08997 * 109.46740 * 55.00506 * 4 3 2 6 6 O 1.42890 * 109.47210 * 295.00029 * 4 3 2 7 7 C 1.35664 * 117.00041 * 93.76686 * 6 4 3 8 8 C 1.39160 * 119.90566 * 182.42167 * 7 6 4 9 9 C 1.37597 * 120.09236 * 179.75804 * 8 7 6 10 10 C 1.39948 * 119.90657 * 0.51659 * 9 8 7 11 11 C 1.47565 * 120.09763 * 179.72146 * 10 9 8 12 12 O 1.21817 * 120.00306 * 180.02562 * 11 10 9 13 13 C 1.41766 * 119.99648 * 0.02562 * 11 10 9 14 14 H 1.08001 * 120.00472 * 0.02562 * 13 11 10 15 15 C 1.40351 * 119.99603 * 180.02562 * 13 11 10 16 16 N 1.30526 * 120.00247 * 359.97438 * 15 13 11 17 17 Si 1.86804 * 119.99553 * 180.02562 * 15 13 11 18 18 H 1.48502 * 109.46869 * 60.00079 * 17 15 13 19 19 H 1.48501 * 109.46601 * 179.97438 * 17 15 13 20 20 H 1.48499 * 109.47262 * 299.99634 * 17 15 13 21 21 C 1.39946 * 119.81047 * 359.73683 * 10 9 8 22 22 C 1.37592 * 119.90759 * 0.02562 * 21 10 9 23 23 C 1.50697 * 109.47019 * 174.99815 * 4 3 2 24 24 O 1.20825 * 119.99842 * 120.00301 * 23 4 3 25 25 O 1.34226 * 120.00236 * 299.73151 * 23 4 3 26 26 C 1.45206 * 117.00370 * 180.27696 * 25 23 4 27 27 C 1.52994 * 109.47241 * 179.97438 * 26 25 23 28 28 H 1.08994 * 109.47478 * 180.02562 * 1 2 3 29 29 H 1.09000 * 109.47158 * 300.00151 * 1 2 3 30 30 H 1.09008 * 109.46965 * 59.99975 * 1 2 3 31 31 H 1.09000 * 109.47158 * 239.99849 * 2 1 3 32 32 H 1.09000 * 109.47089 * 119.99723 * 2 1 3 33 33 H 1.08993 * 109.47405 * 60.00172 * 3 2 1 34 34 H 1.08994 * 109.47313 * 299.99895 * 3 2 1 35 35 H 1.07999 * 119.95372 * 359.97438 * 8 7 6 36 36 H 1.08002 * 120.04458 * 180.25249 * 9 8 7 37 37 H 0.96998 * 119.99876 * 179.97438 * 16 15 13 38 38 H 1.08001 * 120.04970 * 180.02562 * 21 10 9 39 39 H 1.08007 * 119.95578 * 179.97438 * 22 21 10 40 40 H 1.09005 * 109.46653 * 299.99704 * 26 25 23 41 41 H 1.08999 * 109.47328 * 59.99229 * 26 25 23 42 42 H 1.08999 * 109.47375 * 59.99521 * 27 26 25 43 43 H 1.09000 * 109.46870 * 179.97438 * 27 26 25 44 44 H 1.08998 * 109.47386 * 299.99933 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 3.5700 1.4424 0.0006 5 1 3.9336 0.8529 -0.8410 6 8 4.0458 0.8732 1.2219 7 6 4.3259 -0.4541 1.2147 8 6 4.7448 -1.0811 2.3843 9 6 5.0252 -2.4282 2.3826 10 6 4.8990 -3.1657 1.1999 11 6 5.2045 -4.6094 1.1919 12 8 5.0944 -5.2496 0.1613 13 6 5.6260 -5.2513 2.3835 14 1 5.7232 -4.6839 3.2973 15 6 5.9171 -6.6243 2.3757 16 7 5.7992 -7.3102 1.2715 17 14 6.4718 -7.4702 3.9461 18 1 5.4163 -7.3330 4.9817 19 1 6.7134 -8.9099 3.6739 20 1 7.7261 -6.8404 4.4312 21 6 4.4825 -2.5301 0.0248 22 6 4.1994 -1.1836 0.0364 23 6 4.0724 2.8578 -0.1232 24 8 4.7668 3.3305 0.7453 25 8 3.7531 3.5914 -1.2009 26 6 4.2772 4.9445 -1.2563 27 6 3.8114 5.6194 -2.5478 28 1 -0.3634 -1.0276 0.0005 29 1 -0.3633 0.5139 0.8900 30 1 -0.3633 0.5139 -0.8901 31 1 1.8933 -0.5139 -0.8900 32 1 1.8933 -0.5138 0.8900 33 1 1.6767 1.9563 0.8899 34 1 1.6767 1.9563 -0.8899 35 1 4.8467 -0.5103 3.2955 36 1 5.3463 -2.9149 3.2917 37 1 6.0007 -8.2590 1.2661 38 1 4.3834 -3.0956 -0.8900 39 1 3.8784 -0.6922 -0.8702 40 1 3.9134 5.5103 -0.3985 41 1 5.3665 4.9134 -1.2354 42 1 2.7220 5.6505 -2.5691 43 1 4.2044 6.6353 -2.5891 44 1 4.1754 5.0535 -3.4053 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001233527319.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:45:30 Heat of formation + Delta-G solvation = -166.838106 kcal Electronic energy + Delta-G solvation = -26556.109478 eV Core-core repulsion = 22631.091880 eV Total energy + Delta-G solvation = -3925.017598 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 320.150 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -42.16150 -41.04600 -39.40038 -37.89676 -37.47222 -35.85067 -34.77573 -32.86493 -32.12575 -31.77004 -30.46081 -28.60785 -26.37025 -24.70640 -24.16387 -23.60730 -22.31182 -21.80046 -21.31864 -19.69915 -18.80191 -18.48413 -17.86406 -17.79167 -17.39661 -16.72704 -16.57211 -16.01589 -15.60321 -15.33353 -15.12813 -15.02813 -14.63746 -14.43740 -14.33097 -14.10944 -13.97133 -13.65963 -13.53711 -13.40200 -13.04046 -12.97555 -12.90216 -12.85392 -12.66034 -12.54762 -12.42294 -12.21582 -12.08131 -11.85330 -11.74654 -11.59811 -11.40776 -11.26943 -10.96842 -9.94937 -9.61216 -9.07609 -8.33602 -7.06289 0.18569 0.45647 0.90237 1.02807 1.39085 1.41088 1.53933 2.19618 2.21698 2.33858 2.84113 3.32947 3.50979 3.58970 3.75733 3.84876 3.98011 3.99484 4.04578 4.09821 4.15275 4.27400 4.32849 4.44443 4.52042 4.53288 4.68416 4.73875 4.78902 4.84611 4.91597 4.92748 5.08540 5.09065 5.18773 5.23829 5.27209 5.28041 5.34761 5.41414 5.43320 5.71720 5.74486 5.98485 6.29778 6.53669 6.70942 6.80844 8.25886 8.49720 Molecular weight = 320.15amu Principal moments of inertia in cm(-1) A = 0.021773 B = 0.002632 C = 0.002541 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1285.715589 B =10637.702653 C =11018.396460 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.132 4.132 3 C -0.121 4.121 4 C 0.084 3.916 5 H 0.131 0.869 6 O -0.297 6.297 7 C 0.128 3.872 8 C -0.158 4.158 9 C -0.052 4.052 10 C -0.173 4.173 11 C 0.365 3.635 12 O -0.599 6.599 13 C -0.544 4.544 14 H 0.096 0.904 15 C 0.023 3.977 16 N -0.787 5.787 17 Si 0.994 3.006 18 H -0.251 1.251 19 H -0.270 1.270 20 H -0.252 1.252 21 C -0.061 4.061 22 C -0.204 4.204 23 C 0.471 3.529 24 O -0.522 6.522 25 O -0.347 6.347 26 C 0.052 3.948 27 C -0.146 4.146 28 H 0.051 0.949 29 H 0.057 0.943 30 H 0.072 0.928 31 H 0.072 0.928 32 H 0.048 0.952 33 H 0.078 0.922 34 H 0.117 0.883 35 H 0.149 0.851 36 H 0.142 0.858 37 H 0.282 0.718 38 H 0.114 0.886 39 H 0.157 0.843 40 H 0.073 0.927 41 H 0.067 0.933 42 H 0.073 0.927 43 H 0.101 0.899 44 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.639 22.638 -3.565 24.157 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.170 4.170 3 C -0.158 4.158 4 C 0.026 3.974 5 H 0.148 0.852 6 O -0.211 6.211 7 C 0.084 3.916 8 C -0.176 4.176 9 C -0.071 4.071 10 C -0.175 4.175 11 C 0.266 3.734 12 O -0.493 6.493 13 C -0.574 4.574 14 H 0.114 0.886 15 C -0.196 4.196 16 N -0.416 5.416 17 Si 0.812 3.188 18 H -0.174 1.174 19 H -0.195 1.195 20 H -0.175 1.175 21 C -0.080 4.080 22 C -0.222 4.222 23 C 0.313 3.687 24 O -0.411 6.411 25 O -0.264 6.264 26 C -0.021 4.021 27 C -0.203 4.203 28 H 0.070 0.930 29 H 0.076 0.924 30 H 0.091 0.909 31 H 0.090 0.910 32 H 0.067 0.933 33 H 0.097 0.903 34 H 0.135 0.865 35 H 0.167 0.833 36 H 0.160 0.840 37 H 0.092 0.908 38 H 0.132 0.868 39 H 0.175 0.825 40 H 0.091 0.909 41 H 0.086 0.914 42 H 0.092 0.908 43 H 0.119 0.881 44 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -7.473 22.563 -3.781 24.067 hybrid contribution 0.548 -0.661 0.458 0.973 sum -6.925 21.902 -3.323 23.210 Atomic orbital electron populations 1.21716 0.94081 1.01996 1.02644 1.21719 0.97587 0.95302 1.02353 1.22080 0.88974 0.99259 1.05501 1.22099 0.97409 0.88556 0.89317 0.85176 1.86052 1.80480 1.20564 1.34013 1.19123 0.96033 0.81894 0.94590 1.20532 1.05482 0.94095 0.97509 1.21369 0.95348 0.92506 0.97833 1.21470 1.03246 0.97926 0.94830 1.18757 0.79189 0.86023 0.89470 1.90440 1.54958 1.67722 1.36226 1.21448 1.42406 0.95221 0.98343 0.88650 1.27271 0.92733 0.98384 1.01217 1.70095 1.32257 1.08955 1.30278 0.85124 0.80061 0.77004 0.76613 1.17440 1.19477 1.17548 1.21091 0.95225 0.94043 0.97631 1.21262 1.08584 0.94211 0.98173 1.23369 0.77210 0.88464 0.79617 1.90694 1.36077 1.72737 1.41550 1.86472 1.69659 1.28398 1.41834 1.23409 0.99269 0.77886 1.01568 1.21837 1.03202 1.00915 0.94305 0.93019 0.92436 0.90936 0.90957 0.93328 0.90291 0.86483 0.83347 0.84036 0.90766 0.86807 0.82542 0.90904 0.91410 0.90784 0.88094 0.91197 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.48 9.91 71.98 0.71 -1.76 16 2 C -0.13 -2.64 4.47 30.59 0.14 -2.50 16 3 C -0.12 -2.10 4.89 30.60 0.15 -1.96 16 4 C 0.08 1.87 2.69 29.85 0.08 1.95 16 5 H 0.13 2.55 5.36 -2.39 -0.01 2.54 16 6 O -0.30 -8.74 9.19 -70.72 -0.65 -9.39 16 7 C 0.13 4.14 5.33 22.71 0.12 4.26 16 8 C -0.16 -5.36 9.97 22.34 0.22 -5.14 16 9 C -0.05 -2.09 9.43 22.53 0.21 -1.88 16 10 C -0.17 -8.27 5.89 -19.99 -0.12 -8.38 16 11 C 0.37 21.49 6.91 25.61 0.18 21.67 16 12 O -0.60 -40.08 14.89 -4.72 -0.07 -40.15 16 13 C -0.54 -30.35 8.86 23.66 0.21 -30.14 16 14 H 0.10 4.70 6.01 -2.91 -0.02 4.68 16 15 C 0.02 1.24 5.50 85.40 0.47 1.71 16 16 N -0.79 -46.72 11.73 21.89 0.26 -46.47 16 17 Si 0.99 39.24 29.56 68.60 2.03 41.27 16 18 H -0.25 -9.29 7.11 99.48 0.71 -8.59 16 19 H -0.27 -10.22 7.11 99.48 0.71 -9.52 16 20 H -0.25 -9.37 7.11 99.48 0.71 -8.67 16 21 C -0.06 -2.57 9.59 22.53 0.22 -2.35 16 22 C -0.20 -6.59 7.11 22.34 0.16 -6.43 16 23 C 0.47 11.25 7.33 71.24 0.52 11.78 16 24 O -0.52 -16.23 16.25 28.40 0.46 -15.77 16 25 O -0.35 -6.44 10.04 -51.38 -0.52 -6.96 16 26 C 0.05 0.75 6.19 71.98 0.45 1.19 16 27 C -0.15 -1.16 10.29 71.98 0.74 -0.42 16 28 H 0.05 0.95 8.14 -2.39 -0.02 0.93 16 29 H 0.06 0.92 8.14 -2.39 -0.02 0.90 16 30 H 0.07 0.95 8.14 -2.38 -0.02 0.93 16 31 H 0.07 1.40 6.79 -2.39 -0.02 1.39 16 32 H 0.05 1.24 6.25 -2.39 -0.01 1.23 16 33 H 0.08 1.42 8.14 -2.39 -0.02 1.40 16 34 H 0.12 1.45 8.00 -2.39 -0.02 1.43 16 35 H 0.15 4.30 8.06 -2.91 -0.02 4.27 16 36 H 0.14 5.37 6.19 -2.91 -0.02 5.35 16 37 H 0.28 14.97 8.29 -92.71 -0.77 14.20 16 38 H 0.11 5.01 7.65 -2.91 -0.02 4.98 16 39 H 0.16 3.86 4.53 -2.91 -0.01 3.85 16 40 H 0.07 1.04 8.13 -2.38 -0.02 1.02 16 41 H 0.07 1.04 8.13 -2.39 -0.02 1.02 16 42 H 0.07 0.53 8.14 -2.39 -0.02 0.51 16 43 H 0.10 0.43 8.14 -2.39 -0.02 0.41 16 44 H 0.07 0.57 8.14 -2.39 -0.02 0.55 16 Total: -1.00 -78.05 367.70 6.99 -71.06 By element: Atomic # 1 Polarization: 23.79 SS G_CDS: 1.02 Total: 24.81 kcal Atomic # 6 Polarization: -22.86 SS G_CDS: 4.46 Total: -18.41 kcal Atomic # 7 Polarization: -46.72 SS G_CDS: 0.26 Total: -46.47 kcal Atomic # 8 Polarization: -71.49 SS G_CDS: -0.77 Total: -72.27 kcal Atomic # 14 Polarization: 39.24 SS G_CDS: 2.03 Total: 41.27 kcal Total: -78.05 6.99 -71.06 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001233527319.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -95.780 kcal (2) G-P(sol) polarization free energy of solvation -78.046 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -173.826 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.988 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.058 kcal (6) G-S(sol) free energy of system = (1) + (5) -166.838 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds