Wall clock time and date at job start Tue Mar 31 2020 13:01:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 C 1.53006 * 109.46936 * 2 1 4 4 H 1.08998 * 109.46888 * 54.82354 * 3 2 1 5 5 C 1.50699 * 109.46713 * 174.82440 * 3 2 1 6 6 H 1.08004 * 120.00078 * 92.86514 * 5 3 2 7 7 C 1.37880 * 120.00063 * 272.85820 * 5 3 2 8 8 N 1.31519 * 119.99757 * 355.43418 * 7 5 3 9 9 Si 1.86799 * 120.00049 * 175.43587 * 7 5 3 10 10 H 1.48494 * 109.47158 * 89.99650 * 9 7 5 11 11 H 1.48503 * 109.46774 * 329.99762 * 9 7 5 12 12 H 1.48493 * 109.46892 * 210.00359 * 9 7 5 13 13 N 1.46900 * 109.47066 * 294.82649 * 3 2 1 14 14 C 1.47094 * 110.99763 * 294.04152 * 13 3 2 15 15 C 1.54031 * 106.86054 * 219.08591 * 14 13 3 16 16 H 1.09002 * 113.57650 * 264.11831 * 15 14 13 17 17 C 1.51337 * 108.94577 * 137.23855 * 15 14 13 18 18 O 1.21304 * 124.88378 * 87.13874 * 17 15 14 19 19 N 1.34376 * 110.23200 * 267.16377 * 17 15 14 20 20 C 1.40723 * 124.34269 * 179.97438 * 19 17 15 21 21 C 1.38801 * 122.61768 * 359.70923 * 20 19 17 22 22 C 1.33368 * 114.88789 * 179.80415 * 21 20 19 23 23 S 1.75850 * 109.71086 * 0.44084 * 22 21 20 24 24 C 1.33806 * 122.62485 * 179.97438 * 20 19 17 25 25 C 1.46758 * 111.32028 * 0.02562 * 19 17 15 26 26 C 1.54266 * 105.51247 * 342.74321 * 25 19 17 27 27 H 1.09000 * 113.73330 * 263.89672 * 26 25 19 28 28 C 1.47029 * 110.99874 * 172.36486 * 13 3 2 29 29 H 1.08991 * 109.46850 * 299.99801 * 1 2 3 30 30 H 1.08997 * 109.46792 * 59.99931 * 1 2 3 31 31 H 1.08994 * 109.46592 * 179.97438 * 1 2 3 32 32 H 1.09001 * 109.47367 * 240.00244 * 2 1 3 33 33 H 1.08998 * 109.46976 * 119.99550 * 2 1 3 34 34 H 0.96997 * 119.99794 * 5.45926 * 8 7 5 35 35 H 1.08996 * 109.98575 * 338.44148 * 14 13 3 36 36 H 1.09006 * 109.98359 * 99.74150 * 14 13 3 37 37 H 1.08002 * 122.56187 * 359.97438 * 21 20 19 38 38 H 1.08010 * 125.14191 * 180.18981 * 22 21 20 39 39 H 1.08004 * 125.20524 * 0.02562 * 24 20 19 40 40 H 1.09003 * 110.23923 * 223.73435 * 25 19 17 41 41 H 1.09003 * 110.23742 * 101.75326 * 25 19 17 42 42 H 1.08996 * 109.75340 * 243.65186 * 28 13 3 43 43 H 1.09003 * 109.75019 * 4.33138 * 28 13 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4426 0.0000 4 1 1.6030 1.9824 0.8400 5 6 3.5416 1.4444 0.1282 6 1 4.1592 1.4638 -0.7577 7 6 4.1270 1.4216 1.3763 8 7 3.3779 1.4890 2.4553 9 14 5.9839 1.2952 1.5348 10 1 6.5728 2.6582 1.5569 11 1 6.5290 0.5391 0.3788 12 1 6.3261 0.5876 2.7947 13 7 1.6550 2.0980 -1.2570 14 6 2.3403 1.4826 -2.4038 15 6 2.7253 2.6267 -3.3607 16 1 2.0052 2.7845 -4.1636 17 6 4.1321 2.3917 -3.8666 18 8 4.4175 1.7233 -4.8378 19 7 5.0197 3.0294 -3.0848 20 6 6.4124 3.0102 -3.2858 21 6 7.0085 2.3123 -4.3270 22 6 8.3383 2.4032 -4.3748 23 16 8.9125 3.4031 -3.0471 24 6 7.2658 3.6591 -2.4851 25 6 4.3506 3.7476 -1.9938 26 6 2.8711 3.8554 -2.4172 27 1 2.6201 4.8008 -2.8981 28 6 1.9679 3.5342 -1.2197 29 1 -0.3633 0.5138 0.8899 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3632 -1.0276 -0.0005 32 1 1.8935 -0.5138 -0.8900 33 1 1.8934 -0.5138 0.8900 34 1 2.4113 1.4747 2.3762 35 1 3.2364 0.9616 -2.0666 36 1 1.6709 0.7853 -2.9075 37 1 6.4389 1.7416 -5.0454 38 1 8.9675 1.9304 -5.1144 39 1 6.9863 4.2489 -1.6246 40 1 4.7824 4.7414 -1.8759 41 1 4.4367 3.1855 -1.0638 42 1 1.0471 4.1136 -1.2865 43 1 2.4873 3.7740 -0.2919 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001255169793.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:01:05 Heat of formation + Delta-G solvation = 1.707867 kcal Electronic energy + Delta-G solvation = -26337.437775 eV Core-core repulsion = 22894.774501 eV Total energy + Delta-G solvation = -3442.663274 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 320.130 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -42.62978 -39.91002 -38.58552 -37.18638 -35.24314 -33.68172 -31.73482 -30.89179 -29.99041 -28.25370 -26.67098 -25.53209 -24.70875 -23.11402 -22.03765 -21.53830 -21.10790 -19.82346 -18.91615 -18.64866 -17.63368 -17.39166 -16.84989 -16.31650 -15.92915 -15.71185 -15.59119 -15.00797 -14.82684 -14.62827 -14.52158 -14.42009 -14.06780 -13.75720 -13.67014 -13.46664 -13.28131 -12.96537 -12.72655 -12.69155 -12.51534 -12.21019 -12.11580 -12.09082 -11.94955 -11.84153 -11.55852 -11.43913 -11.06082 -10.87419 -10.76169 -10.48489 -9.77082 -8.93256 -8.78242 -8.47725 -6.27515 -0.10357 0.60097 0.87918 1.09220 1.42737 1.50261 1.65523 1.91521 1.98431 2.47429 2.99333 3.18164 3.24249 3.61351 3.68773 3.77910 3.93763 4.17115 4.30142 4.36784 4.37230 4.43026 4.49070 4.55657 4.62149 4.71582 4.78814 4.81733 4.88697 4.94263 5.00799 5.03454 5.07125 5.11970 5.21246 5.26065 5.36435 5.50107 5.58648 5.63676 5.95386 5.97833 6.09194 6.45563 6.55460 6.66751 6.90215 7.50136 8.82154 Molecular weight = 320.13amu Principal moments of inertia in cm(-1) A = 0.012852 B = 0.005945 C = 0.004616 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2178.056689 B = 4708.704242 C = 6064.672166 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C -0.102 4.102 3 C 0.194 3.806 4 H 0.023 0.977 5 C -0.610 4.610 6 H 0.054 0.946 7 C -0.008 4.008 8 N -0.934 5.934 9 Si 1.080 2.920 10 H -0.266 1.266 11 H -0.289 1.289 12 H -0.288 1.288 13 N -0.513 5.513 14 C 0.068 3.932 15 C -0.115 4.115 16 H 0.143 0.857 17 C 0.521 3.479 18 O -0.552 6.552 19 N -0.544 5.544 20 C 0.132 3.868 21 C -0.178 4.178 22 C -0.185 4.185 23 S 0.158 5.842 24 C -0.283 4.283 25 C 0.081 3.919 26 C -0.094 4.094 27 H 0.140 0.860 28 C 0.063 3.937 29 H 0.039 0.961 30 H 0.065 0.935 31 H 0.048 0.952 32 H 0.038 0.962 33 H 0.023 0.977 34 H 0.264 0.736 35 H 0.036 0.964 36 H 0.076 0.924 37 H 0.147 0.853 38 H 0.199 0.801 39 H 0.172 0.828 40 H 0.099 0.901 41 H 0.091 0.909 42 H 0.091 0.909 43 H 0.047 0.953 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.180 7.084 -10.982 13.721 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C -0.140 4.140 3 C 0.086 3.914 4 H 0.041 0.959 5 C -0.649 4.649 6 H 0.072 0.928 7 C -0.210 4.210 8 N -0.571 5.571 9 Si 0.906 3.094 10 H -0.191 1.191 11 H -0.215 1.215 12 H -0.214 1.214 13 N -0.236 5.236 14 C -0.061 4.061 15 C -0.137 4.137 16 H 0.160 0.840 17 C 0.310 3.690 18 O -0.430 6.430 19 N -0.268 5.268 20 C 0.028 3.972 21 C -0.210 4.210 22 C -0.321 4.321 23 S 0.419 5.581 24 C -0.422 4.422 25 C -0.040 4.040 26 C -0.113 4.113 27 H 0.158 0.842 28 C -0.066 4.066 29 H 0.058 0.942 30 H 0.084 0.916 31 H 0.067 0.933 32 H 0.057 0.943 33 H 0.042 0.958 34 H 0.075 0.925 35 H 0.054 0.946 36 H 0.094 0.906 37 H 0.164 0.836 38 H 0.216 0.784 39 H 0.189 0.811 40 H 0.117 0.883 41 H 0.108 0.892 42 H 0.109 0.891 43 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges 6.457 7.149 -9.924 13.831 hybrid contribution -1.661 -0.858 -0.937 2.091 sum 4.796 6.290 -10.861 13.436 Atomic orbital electron populations 1.21611 0.95195 1.00404 1.01528 1.21515 0.95662 0.98243 0.98612 1.19492 0.92795 0.91205 0.87891 0.95888 1.22731 0.93496 1.54366 0.94274 0.92769 1.26447 1.08594 0.93328 0.92596 1.70851 1.06965 1.47955 1.31344 0.83377 0.72559 0.78005 0.75479 1.19140 1.21489 1.21411 1.63503 1.54683 1.02432 1.03004 1.22439 0.97480 0.95589 0.90588 1.22987 0.93237 0.97410 1.00070 0.83969 1.21363 0.89047 0.77383 0.81198 1.90577 1.83775 1.40647 1.28049 1.45840 1.03334 1.48810 1.28810 1.17101 0.82999 0.99994 0.97124 1.20352 0.95547 1.04223 1.00859 1.25908 0.97504 1.04870 1.03832 1.83821 1.04134 1.47678 1.22464 1.25264 0.96889 1.12379 1.07654 1.22932 0.92723 0.98194 0.90161 1.23132 0.93041 0.99257 0.95866 0.84237 1.22436 0.98118 0.89584 0.96420 0.94222 0.91612 0.93278 0.94293 0.95779 0.92546 0.94583 0.90590 0.83580 0.78409 0.81062 0.88251 0.89150 0.89064 0.93442 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.60 9.80 71.98 0.71 -3.89 16 2 C -0.10 -4.36 5.34 30.60 0.16 -4.20 16 3 C 0.19 8.62 1.30 44.17 0.06 8.68 16 4 H 0.02 1.15 6.51 -2.39 -0.02 1.14 16 5 C -0.61 -29.90 5.23 25.60 0.13 -29.76 16 6 H 0.05 2.72 4.36 -2.91 -0.01 2.71 16 7 C -0.01 -0.43 5.46 84.65 0.46 0.03 16 8 N -0.93 -52.66 13.62 21.45 0.29 -52.37 16 9 Si 1.08 48.76 29.91 68.60 2.05 50.82 16 10 H -0.27 -11.06 7.11 99.48 0.71 -10.36 16 11 H -0.29 -13.00 7.11 99.48 0.71 -12.29 16 12 H -0.29 -13.24 7.11 99.48 0.71 -12.53 16 13 N -0.51 -18.87 4.56 -871.60 -3.98 -22.85 16 14 C 0.07 2.45 4.57 86.61 0.40 2.84 16 15 C -0.11 -3.47 4.12 -10.09 -0.04 -3.51 16 16 H 0.14 3.57 8.14 -2.39 -0.02 3.55 16 17 C 0.52 18.53 6.93 87.92 0.61 19.14 16 18 O -0.55 -22.21 15.13 -3.10 -0.05 -22.26 16 19 N -0.54 -18.54 3.16 -631.84 -2.00 -20.53 16 20 C 0.13 4.39 6.53 36.84 0.24 4.63 16 21 C -0.18 -5.61 9.37 21.30 0.20 -5.41 16 22 C -0.19 -4.47 11.22 66.72 0.75 -3.72 16 23 S 0.16 3.62 23.33 -56.49 -1.32 2.30 16 24 C -0.28 -8.20 10.49 66.81 0.70 -7.50 16 25 C 0.08 2.51 5.63 86.76 0.49 3.00 16 26 C -0.09 -2.51 4.21 -9.34 -0.04 -2.55 16 27 H 0.14 2.70 8.14 -2.39 -0.02 2.68 16 28 C 0.06 1.99 5.92 86.41 0.51 2.50 16 29 H 0.04 1.40 8.14 -2.39 -0.02 1.38 16 30 H 0.06 2.20 7.76 -2.39 -0.02 2.18 16 31 H 0.05 1.54 8.14 -2.39 -0.02 1.52 16 32 H 0.04 1.67 7.18 -2.39 -0.02 1.65 16 33 H 0.02 1.14 8.14 -2.39 -0.02 1.12 16 34 H 0.26 14.94 6.62 -92.71 -0.61 14.33 16 35 H 0.04 1.58 4.94 -2.39 -0.01 1.57 16 36 H 0.08 2.63 8.14 -2.38 -0.02 2.61 16 37 H 0.15 5.10 5.80 -2.91 -0.02 5.09 16 38 H 0.20 3.35 8.06 -2.91 -0.02 3.33 16 39 H 0.17 4.63 7.49 -2.91 -0.02 4.60 16 40 H 0.10 2.54 7.74 -2.39 -0.02 2.53 16 41 H 0.09 3.49 4.26 -2.39 -0.01 3.48 16 42 H 0.09 2.45 8.14 -2.39 -0.02 2.43 16 43 H 0.05 1.77 6.61 -2.39 -0.02 1.75 16 Total: -1.00 -61.69 341.46 1.53 -60.16 By element: Atomic # 1 Polarization: 23.27 SS G_CDS: 1.19 Total: 24.46 kcal Atomic # 6 Polarization: -25.06 SS G_CDS: 5.34 Total: -19.72 kcal Atomic # 7 Polarization: -90.07 SS G_CDS: -5.68 Total: -95.76 kcal Atomic # 8 Polarization: -22.21 SS G_CDS: -0.05 Total: -22.26 kcal Atomic # 14 Polarization: 48.76 SS G_CDS: 2.05 Total: 50.82 kcal Atomic # 16 Polarization: 3.62 SS G_CDS: -1.32 Total: 2.30 kcal Total: -61.69 1.53 -60.16 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001255169793.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 61.871 kcal (2) G-P(sol) polarization free energy of solvation -61.692 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 0.179 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.529 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.163 kcal (6) G-S(sol) free energy of system = (1) + (5) 1.708 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds