Wall clock time and date at job start Tue Mar 31 2020 13:01:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52998 * 109.47066 * 2 1 4 4 H 1.09003 * 109.47674 * 180.42234 * 3 2 1 5 5 C 1.50703 * 109.47281 * 60.42632 * 3 2 1 6 6 H 1.08009 * 119.99855 * 239.99946 * 5 3 2 7 7 C 1.37873 * 120.00402 * 60.27572 * 5 3 2 8 8 N 1.31514 * 119.99282 * 359.72365 * 7 5 3 9 9 Si 1.86794 * 120.00221 * 179.72627 * 7 5 3 10 10 H 1.48490 * 109.47287 * 0.02562 * 9 7 5 11 11 H 1.48502 * 109.46804 * 119.99991 * 9 7 5 12 12 H 1.48499 * 109.47102 * 239.99879 * 9 7 5 13 13 N 1.46905 * 109.47206 * 300.42683 * 3 2 1 14 14 C 1.47097 * 110.99385 * 301.22550 * 13 3 2 15 15 C 1.54033 * 106.85554 * 219.08281 * 14 13 3 16 16 H 1.09001 * 112.98882 * 264.45006 * 15 14 13 17 17 C 1.51340 * 108.93955 * 137.24315 * 15 14 13 18 18 O 1.21307 * 124.88688 * 87.16013 * 17 15 14 19 19 N 1.34376 * 110.23187 * 267.15569 * 17 15 14 20 20 C 1.40715 * 124.34424 * 180.02562 * 19 17 15 21 21 C 1.38803 * 122.62248 * 359.71160 * 20 19 17 22 22 C 1.33360 * 114.89457 * 179.79998 * 21 20 19 23 23 S 1.75857 * 109.70883 * 0.44644 * 22 21 20 24 24 C 1.33817 * 122.62565 * 179.97438 * 20 19 17 25 25 C 1.46764 * 111.31640 * 0.02562 * 19 17 15 26 26 C 1.54266 * 105.51229 * 342.73710 * 25 19 17 27 27 H 1.08999 * 113.73517 * 263.89688 * 26 25 19 28 28 C 1.47025 * 111.00202 * 179.55198 * 13 3 2 29 29 H 1.09003 * 109.46907 * 296.35583 * 1 2 3 30 30 H 1.08992 * 109.47140 * 56.35444 * 1 2 3 31 31 H 1.09001 * 109.46911 * 176.35964 * 1 2 3 32 32 H 1.08995 * 109.47019 * 239.99959 * 2 1 3 33 33 H 1.09001 * 109.47446 * 119.99398 * 2 1 3 34 34 H 0.97007 * 119.99956 * 179.97438 * 8 7 5 35 35 H 1.08996 * 109.98771 * 338.43882 * 14 13 3 36 36 H 1.09007 * 109.98157 * 99.73864 * 14 13 3 37 37 H 1.08000 * 122.55158 * 0.02562 * 21 20 19 38 38 H 1.08002 * 125.14928 * 180.18608 * 22 21 20 39 39 H 1.08001 * 125.19802 * 0.02749 * 24 20 19 40 40 H 1.09006 * 110.23487 * 223.73046 * 25 19 17 41 41 H 1.08993 * 110.24237 * 101.75302 * 25 19 17 42 42 H 1.09005 * 109.74976 * 243.65302 * 28 13 3 43 43 H 1.09006 * 109.75058 * 4.32363 * 28 13 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 3.1300 1.4426 -0.0076 5 6 1.5463 2.1499 1.2357 6 1 0.9247 3.0283 1.1431 7 6 1.8928 1.6792 2.4844 8 7 2.6497 0.6096 2.5971 9 14 1.2872 2.5605 4.0160 10 1 0.4578 3.7270 3.6205 11 1 0.4706 1.6276 4.8335 12 1 2.4511 3.0269 4.8115 13 7 1.5419 2.1380 -1.1943 14 6 1.9809 1.4572 -2.4221 15 6 2.3355 2.5572 -3.4403 16 1 1.5156 2.7879 -4.1206 17 6 3.6190 2.1775 -4.1466 18 8 3.6853 1.4858 -5.1409 19 7 4.6747 2.7169 -3.5139 20 6 6.0120 2.5534 -3.9199 21 6 6.3705 1.8006 -5.0296 22 6 7.6802 1.7526 -5.2762 23 16 8.5469 2.6832 -4.0615 24 6 7.0381 3.1074 -3.2635 25 6 4.2539 3.4984 -2.3451 26 6 2.7471 3.7616 -2.5454 27 1 2.5269 4.7293 -2.9961 28 6 2.0043 3.5333 -1.2227 29 1 -0.3633 0.4562 0.9209 30 1 -0.3633 0.5693 -0.8554 31 1 -0.3633 -1.0256 -0.0653 32 1 1.8933 -0.5138 -0.8899 33 1 1.8934 -0.5137 0.8900 34 1 2.8938 0.2785 3.4756 35 1 2.8582 0.8444 -2.2150 36 1 1.1750 0.8350 -2.8115 37 1 5.6437 1.2952 -5.6483 38 1 8.1396 1.2193 -6.0953 39 1 6.9528 3.7204 -2.3784 40 1 4.7994 4.4414 -2.3058 41 1 4.4189 2.9283 -1.4310 42 1 1.1490 4.2062 -1.1594 43 1 2.6784 3.7151 -0.3856 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001255169794.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:01:09 Heat of formation + Delta-G solvation = 20.161866 kcal Electronic energy + Delta-G solvation = -25599.294237 eV Core-core repulsion = 22157.431188 eV Total energy + Delta-G solvation = -3441.863049 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 320.130 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -41.42229 -38.54535 -37.41189 -35.78748 -33.73332 -31.61959 -30.27336 -29.63292 -28.91632 -26.36924 -25.96610 -23.90052 -23.39080 -21.73991 -20.78363 -20.31130 -19.05292 -18.64364 -17.79789 -16.65346 -16.40940 -16.06928 -15.21912 -15.17345 -14.79334 -14.39794 -13.82189 -13.75779 -13.49313 -13.24137 -13.08328 -12.87869 -12.67170 -12.52401 -12.49399 -12.31144 -11.81754 -11.49325 -11.36066 -11.01768 -11.00261 -10.87682 -10.76032 -10.60754 -10.41852 -10.12660 -10.05777 -9.71094 -9.62410 -9.42931 -8.91870 -8.82754 -8.48950 -7.82685 -7.29540 -6.07319 -4.11625 0.87367 1.52694 1.82972 2.21718 2.95160 3.03737 3.24670 3.33981 3.36999 4.14645 4.34659 4.37691 4.73764 4.77536 4.91413 5.07578 5.23614 5.25289 5.28758 5.39302 5.46957 5.54119 5.61727 5.79021 5.91920 5.95230 6.05037 6.15898 6.25769 6.37803 6.44689 6.51461 6.58577 6.69810 6.73317 7.02131 7.09150 7.19006 7.30923 7.56930 7.66924 7.77712 8.03263 8.05437 8.25216 8.45742 8.94065 9.53115 10.98987 Molecular weight = 320.13amu Principal moments of inertia in cm(-1) A = 0.016145 B = 0.003830 C = 0.003475 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1733.886864 B = 7309.664151 C = 8055.704514 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 C -0.113 4.113 3 C 0.214 3.786 4 H -0.002 1.002 5 C -0.498 4.498 6 H 0.063 0.937 7 C 0.061 3.939 8 N -0.891 5.891 9 Si 0.892 3.108 10 H -0.272 1.272 11 H -0.285 1.285 12 H -0.286 1.286 13 N -0.516 5.516 14 C 0.067 3.933 15 C -0.125 4.125 16 H 0.122 0.878 17 C 0.529 3.471 18 O -0.518 6.518 19 N -0.549 5.549 20 C 0.159 3.841 21 C -0.148 4.148 22 C -0.198 4.198 23 S 0.108 5.892 24 C -0.270 4.270 25 C 0.102 3.898 26 C -0.117 4.117 27 H 0.105 0.895 28 C 0.065 3.935 29 H 0.055 0.945 30 H 0.045 0.955 31 H 0.015 0.985 32 H 0.012 0.988 33 H 0.092 0.908 34 H 0.260 0.740 35 H 0.042 0.958 36 H 0.080 0.920 37 H 0.165 0.835 38 H 0.168 0.832 39 H 0.166 0.834 40 H 0.084 0.916 41 H 0.088 0.912 42 H 0.073 0.927 43 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.065 5.992 -12.008 15.166 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C -0.151 4.151 3 C 0.108 3.892 4 H 0.016 0.984 5 C -0.537 4.537 6 H 0.082 0.918 7 C -0.140 4.140 8 N -0.530 5.530 9 Si 0.720 3.280 10 H -0.197 1.197 11 H -0.211 1.211 12 H -0.212 1.212 13 N -0.241 5.241 14 C -0.062 4.062 15 C -0.147 4.147 16 H 0.140 0.860 17 C 0.318 3.682 18 O -0.393 6.393 19 N -0.273 5.273 20 C 0.055 3.945 21 C -0.179 4.179 22 C -0.333 4.333 23 S 0.369 5.631 24 C -0.409 4.409 25 C -0.019 4.019 26 C -0.137 4.137 27 H 0.123 0.877 28 C -0.064 4.064 29 H 0.075 0.925 30 H 0.065 0.935 31 H 0.034 0.966 32 H 0.030 0.970 33 H 0.110 0.890 34 H 0.070 0.930 35 H 0.060 0.940 36 H 0.098 0.902 37 H 0.182 0.818 38 H 0.186 0.814 39 H 0.184 0.816 40 H 0.102 0.898 41 H 0.106 0.894 42 H 0.091 0.909 43 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges 8.164 5.799 -12.079 15.690 hybrid contribution -0.767 0.052 0.746 1.071 sum 7.397 5.852 -11.333 14.744 Atomic orbital electron populations 1.21459 0.97122 0.97390 1.01833 1.21570 0.95392 0.98047 1.00100 1.19513 0.92526 0.91145 0.86027 0.98447 1.21060 1.31126 1.12078 0.89438 0.91845 1.24897 0.95137 0.95046 0.98948 1.69890 1.36685 1.22804 1.23592 0.86526 0.78528 0.79752 0.83144 1.19686 1.21068 1.21227 1.63291 1.58215 1.00687 1.01940 1.22538 0.99350 0.94656 0.89627 1.23024 0.95423 0.97646 0.98614 0.85965 1.21058 0.86192 0.78238 0.82747 1.90618 1.86467 1.37468 1.24768 1.45799 1.03277 1.49783 1.28467 1.16800 0.83423 0.98844 0.95463 1.20412 0.96857 1.02061 0.98615 1.25521 0.96756 1.06584 1.04463 1.84077 1.08160 1.48880 1.22011 1.24979 0.94613 1.13105 1.08190 1.22506 0.95580 0.96074 0.87787 1.23285 0.93329 0.98668 0.98435 0.87675 1.22461 0.98109 0.92201 0.93590 0.92547 0.93549 0.96599 0.96967 0.89010 0.92998 0.94005 0.90222 0.81771 0.81415 0.81605 0.89807 0.89363 0.90914 0.90807 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.57 9.49 37.16 0.35 -2.22 16 2 C -0.11 -2.60 5.21 -26.73 -0.14 -2.74 16 3 C 0.21 4.91 1.31 -68.86 -0.09 4.82 16 4 H 0.00 -0.05 8.11 -51.93 -0.42 -0.47 16 5 C -0.50 -12.40 6.50 -34.44 -0.22 -12.63 16 6 H 0.06 1.59 7.41 -52.48 -0.39 1.20 16 7 C 0.06 1.58 5.31 -17.82 -0.09 1.48 16 8 N -0.89 -24.12 11.32 55.43 0.63 -23.49 16 9 Si 0.89 20.24 29.54 -169.99 -5.02 15.22 16 10 H -0.27 -6.08 7.11 56.52 0.40 -5.68 16 11 H -0.28 -6.54 7.11 56.52 0.40 -6.13 16 12 H -0.29 -6.50 7.11 56.52 0.40 -6.10 16 13 N -0.52 -9.84 4.13 -226.82 -0.94 -10.77 16 14 C 0.07 1.16 4.93 -3.18 -0.02 1.14 16 15 C -0.12 -1.81 4.12 -89.54 -0.37 -2.18 16 16 H 0.12 1.58 8.14 -51.93 -0.42 1.16 16 17 C 0.53 8.53 6.93 -10.85 -0.08 8.45 16 18 O -0.52 -9.47 15.13 5.53 0.08 -9.38 16 19 N -0.55 -8.17 3.16 -113.57 -0.36 -8.53 16 20 C 0.16 2.31 6.53 -85.12 -0.56 1.75 16 21 C -0.15 -2.07 9.37 -41.08 -0.39 -2.45 16 22 C -0.20 -2.22 11.22 29.03 0.33 -1.90 16 23 S 0.11 1.15 23.33 -107.50 -2.51 -1.36 16 24 C -0.27 -3.38 10.50 29.18 0.31 -3.08 16 25 C 0.10 1.36 5.84 -3.24 -0.02 1.34 16 26 C -0.12 -1.52 4.21 -88.36 -0.37 -1.90 16 27 H 0.11 1.10 8.14 -51.93 -0.42 0.68 16 28 C 0.06 1.05 5.40 -3.54 -0.02 1.03 16 29 H 0.06 1.29 7.36 -51.93 -0.38 0.91 16 30 H 0.05 0.94 7.48 -51.93 -0.39 0.55 16 31 H 0.01 0.30 8.14 -51.93 -0.42 -0.13 16 32 H 0.01 0.26 6.87 -51.93 -0.36 -0.10 16 33 H 0.09 2.39 6.07 -51.93 -0.32 2.07 16 34 H 0.26 6.79 8.31 -40.82 -0.34 6.45 16 35 H 0.04 0.81 6.75 -51.93 -0.35 0.46 16 36 H 0.08 1.36 8.14 -51.93 -0.42 0.94 16 37 H 0.17 2.51 5.80 -52.49 -0.30 2.21 16 38 H 0.17 1.42 8.06 -52.49 -0.42 0.99 16 39 H 0.17 1.84 7.49 -52.49 -0.39 1.45 16 40 H 0.08 0.91 7.74 -51.93 -0.40 0.51 16 41 H 0.09 1.36 7.56 -51.93 -0.39 0.97 16 42 H 0.07 1.13 8.14 -51.93 -0.42 0.70 16 43 H 0.07 1.31 6.51 -51.93 -0.34 0.97 16 LS Contribution 347.06 15.07 5.23 5.23 Total: -1.00 -28.18 347.06 -10.36 -38.54 By element: Atomic # 1 Polarization: 9.71 SS G_CDS: -6.11 Total: 3.60 kcal Atomic # 6 Polarization: -7.70 SS G_CDS: -1.37 Total: -9.07 kcal Atomic # 7 Polarization: -42.12 SS G_CDS: -0.67 Total: -42.79 kcal Atomic # 8 Polarization: -9.47 SS G_CDS: 0.08 Total: -9.38 kcal Atomic # 14 Polarization: 20.24 SS G_CDS: -5.02 Total: 15.22 kcal Atomic # 16 Polarization: 1.15 SS G_CDS: -2.51 Total: -1.36 kcal Total LS contribution 5.23 Total: 5.23 kcal Total: -28.18 -10.36 -38.54 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001255169794.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 58.703 kcal (2) G-P(sol) polarization free energy of solvation -28.177 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 30.526 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.364 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.541 kcal (6) G-S(sol) free energy of system = (1) + (5) 20.162 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds